mRNA_P-wetherbeei_contig16993.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16993.1.1
Unique NamemRNA_P-wetherbeei_contig16993.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16993.1.1 vs. uniprot
Match: A0A7V2SQC2_9HYPH (Membrane fusion protein (MFP) family protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7V2SQC2_9HYPH)

HSP 1 Score: 257 bits (657), Expect = 9.220e-80
Identity = 137/268 (51.12%), Postives = 194/268 (72.39%), Query Frame = 1
Query:   13 QRAQEIKEAQSRIETLRRSLEITTEELEMIRPLEKSRSASRSELLLVEAKYNDIRGALESTRLAIPRLEAALSEIGRRRTERIEAFRGDALQRLSSARVEHSALQETSRASEDKVARTTVRAPTDGIIKTVHVTTPGQVVQPGHSLVEIVPVNDTLLVEAQVRPQDIAFLRPGQDALVKITAYDFSIYGGLVAKLEHIGADSISTEKGETYYLIRVRTAKAHLAHGSSTLPIMPGMVAEVDVITGSKTVMGYLTKPLVRMRQTALRER 816
            Q+ QE+ E ++R  +L R++ I  +EL++   L + +  S++ELL  + K ND+ G LE+  LA+PRL A L+EI   R E+  +F+ D L RL+ +++++SAL++T     D+V RT VR+P DGI+K ++ +T GQVV+PG  LVEIVP +D+LLVE ++RPQDIAFLR GQ A+VK+TAYD+++YG L  KL  IGADSI+ +KGETYYL+ VRT + HL+     LPI+PGMVA VD++TG KTV+ Y+TKP+ RM   ALRER
Sbjct:  206 QKQQEMTEIKARKASLARAVAIARQELDLTAKLARDQIVSKAELLAAQGKENDLAGQLEAAELALPRLAAGLAEIRNMRQEKNNSFKADILARLNDSQIKYSALEKTIEGDTDRVQRTEVRSPVDGIVKALYTSTIGQVVKPGADLVEIVPQDDSLLVETRIRPQDIAFLRIGQKAVVKLTAYDYALYGSLEGKLVRIGADSITGKKGETYYLVDVRTNENHLSRNGKNLPIIPGMVAGVDILTGEKTVLNYMTKPMHRMASEALRER 473          
BLAST of mRNA_P-wetherbeei_contig16993.1.1 vs. uniprot
Match: UPI00193B2400 (HlyD family type I secretion periplasmic adaptor subunit n=2 Tax=Azospira restricta TaxID=404405 RepID=UPI00193B2400)

HSP 1 Score: 256 bits (653), Expect = 2.800e-79
Identity = 138/268 (51.49%), Postives = 187/268 (69.78%), Query Frame = 1
Query:   13 QRAQEIKEAQSRIETLRRSLEITTEELEMIRPLEKSRSASRSELLLVEAKYNDIRGALESTRLAIPRLEAALSEIGRRRTERIEAFRGDALQRLSSARVEHSALQETSRASEDKVARTTVRAPTDGIIKTVHVTTPGQVVQPGHSLVEIVPVNDTLLVEAQVRPQDIAFLRPGQDALVKITAYDFSIYGGLVAKLEHIGADSISTEKGETYYLIRVRTAKAHLAHGSSTLPIMPGMVAEVDVITGSKTVMGYLTKPLVRMRQTALRER 816
            QR QE+ E ++R + L  S  + T ELE+ RP+ K +  S  ELL +E + NDIRG L++TRLAIPR+EA+L E   +       FR DA   LS AR E  +L  +S A+ED++ARTTVR+P  G++K++ VTT G V+QPG  ++EIVP+ D LL+EA++RP D+ FLRPGQ A+VK+TAYDFS+YGGL A LE I ADSI+ +KGE++YL+RVRT   H       LPI+PGM+  V + TG K+V+ YL KP+++ R  ALRER
Sbjct:  196 QRHQELVEKRARAQQLAESFRLVTAELELTRPMAKQQVISDVELLRLERQANDIRGELDATRLAIPRMEASLHEANSKLEGAQAKFRSDAGVELSQARAEFESLSASSVAAEDRLARTTVRSPVAGVVKSIKVTTVGGVIQPGMEVMEIVPIEDNLLIEAKIRPSDVGFLRPGQSAMVKVTAYDFSVYGGLDATLETITADSITNDKGESFYLVRVRTKANHFGASKERLPIIPGMLTTVHIRTGEKSVLSYLLKPIIKARSEALRER 463          
BLAST of mRNA_P-wetherbeei_contig16993.1.1 vs. uniprot
Match: A0A0C2S2C6_PSEST (Membrane fusion protein (MFP) family protein n=5 Tax=Pseudomonas TaxID=286 RepID=A0A0C2S2C6_PSEST)

HSP 1 Score: 254 bits (649), Expect = 6.280e-79
Identity = 143/269 (53.16%), Postives = 191/269 (71.00%), Query Frame = 1
Query:   10 VQRAQEIKEAQSRIETLRRSLEITTEELEMIRPLEKSRSASRSELLLVEAKYNDIRGALESTRLAIPRLEAALSEIGRRRTERIEAFRGDALQRLSSARVEHSALQETSRASEDKVARTTVRAPTDGIIKTVHVTTPGQVVQPGHSLVEIVPVNDTLLVEAQVRPQDIAFLRPGQDALVKITAYDFSIYGGLVAKLEHIGADSISTEKGETYYLIRVRTAKAHLAHGSSTLPIMPGMVAEVDVITGSKTVMGYLTKPLVRMRQTALRER 816
            VQR QE++E  S+ +  R SL +  +E+EM  PL  S + S  E+L ++    + RG L++T LAIPR +AA+ EI  +  E    FR DAL +L+ AR E S L+ T +A ED+V RT V +P  G++K V V+T G V+QPG  LVEIVP++DTLL+EA++RPQDIAFL PGQ+A+VK TAYDF+IYGGL AKLEHI ADSI+ E+G +++LI +RT K+HL      L I+PGMVA VD+ITG K+V+ YL KP++R R  ALRER
Sbjct:  174 VQRRQEVRELGSKEQQFRSSLGLLRKEIEMSEPLVASGAISAVEVLRLKRAEVESRGQLDATTLAIPRAQAAIKEIESKIGEARGRFRSDALTQLNEARTELSKLKSTGKALEDRVRRTLVTSPVRGVVKQVLVSTIGGVIQPGSDLVEIVPLDDTLLIEARIRPQDIAFLHPGQEAMVKFTAYDFTIYGGLKAKLEHISADSITDEEGNSFFLIHLRTEKSHLGSDEKPLLIIPGMVASVDIITGHKSVLSYLLKPIIRARAEALRER 442          
BLAST of mRNA_P-wetherbeei_contig16993.1.1 vs. uniprot
Match: UPI000F067214 (HlyD family type I secretion periplasmic adaptor subunit n=1 Tax=Pseudomonas viridiflava TaxID=33069 RepID=UPI000F067214)

HSP 1 Score: 253 bits (647), Expect = 1.000e-78
Identity = 140/271 (51.66%), Postives = 193/271 (71.22%), Query Frame = 1
Query:    4 QEVQRAQEIKEAQSRIETLRRSLEITTEELEMIRPLEKSRSASRSELLLVEAKYNDIRGALESTRLAIPRLEAALSEIGRRRTERIEAFRGDALQRLSSARVEHSALQETSRASEDKVARTTVRAPTDGIIKTVHVTTPGQVVQPGHSLVEIVPVNDTLLVEAQVRPQDIAFLRPGQDALVKITAYDFSIYGGLVAKLEHIGADSISTEKGETYYLIRVRTAKAHLAHGSSTLPIMPGMVAEVDVITGSKTVMGYLTKPLVRMRQTALRER 816
            Q +QR QE++E  S+ E  R SL++  +E+ M  PL    + S+ E+L ++    + RG L+ST LAIPR +AA+SE+ R+  E    FR DAL +L+ AR + S  Q T +A  D+V+RT V +P  G++K + V T G VVQPG  LVE+VP++DTLLVEA+VRPQDIAFLRPGQ+A+VK TAYD++IYGGL A+LE IGAD+I+ +KG T+Y+I +RT ++HL      L I+PGMVA VD+ITG K+++ YL KP++R R  ALRER
Sbjct:  164 QVIQRQQELREFTSKQEQFRNSLQLLRQEIAMSEPLVAQGAISQVEVLRLKRSEVETRGQLDSTSLAIPRAQAAISEVSRKIDETRGKFRSDALTQLNEARTDLSKAQATGKALTDRVSRTLVTSPVRGVVKQMMVNTIGGVVQPGSDLVEVVPLDDTLLVEAKVRPQDIAFLRPGQEAMVKFTAYDYTIYGGLKARLEQIGADTITDDKGNTFYMITLRTDRSHLGTDEHPLLIIPGMVASVDIITGKKSILSYLLKPVLRARAEALRER 434          
BLAST of mRNA_P-wetherbeei_contig16993.1.1 vs. uniprot
Match: A0A848WEK2_9PROT (Membrane fusion protein (MFP) family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848WEK2_9PROT)

HSP 1 Score: 252 bits (644), Expect = 3.170e-78
Identity = 141/268 (52.61%), Postives = 192/268 (71.64%), Query Frame = 1
Query:   13 QRAQEIKEAQSRIETLRRSLEITTEELEMIRPLEKSRSASRSELLLVEAKYNDIRGALESTRLAIPRLEAALSEIGRRRTERIEAFRGDALQRLSSARVEHSALQETSRASEDKVARTTVRAPTDGIIKTVHVTTPGQVVQPGHSLVEIVPVNDTLLVEAQVRPQDIAFLRPGQDALVKITAYDFSIYGGLVAKLEHIGADSISTEKGETYYLIRVRTAKAHLAHGSSTLPIMPGMVAEVDVITGSKTVMGYLTKPLVRMRQTALRER 816
            QR+QE+KE +++I  + RSL +  EEL+++RP       SR EL   E + ND+ G L S RL++PR++A+L+E  +R  ER + FR +AL   ++  VE +AL E   A +D+VART VR+P DGIIK + VTT GQVVQPG  LVEIVP++D+LL+EA+VRP DIAFLRPGQ A+VK+TAYDF++YG L  +LE I AD+I  E+GE ++ I VRT +  L    +   I+PGMVA+VDVITG KTV+ Y+T PL+R++  ALRER
Sbjct:  171 QRSQEVKELRNQIRVVGRSLALAQEELDLMRPAVAEGIVSRVELFRTETRVNDLDGQLSSARLSLPRIQASLAEAKQRMEEREKQFRSEALLERNTIEVELAALSENIGAEQDRVARTDVRSPVDGIIKEIKVTTIGQVVQPGLDLVEIVPLDDSLLIEAEVRPADIAFLRPGQPAVVKLTAYDFTLYGTLEGRLERISADTIEDEQGERFFKILVRTERNFLGEEVAGNSILPGMVAQVDVITGKKTVLQYITSPLLRLQGQALRER 438          
BLAST of mRNA_P-wetherbeei_contig16993.1.1 vs. uniprot
Match: A0A7V2WYK2_9PROT (Membrane fusion protein (MFP) family protein n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A7V2WYK2_9PROT)

HSP 1 Score: 251 bits (640), Expect = 8.790e-78
Identity = 134/261 (51.34%), Postives = 184/261 (70.50%), Query Frame = 1
Query:   34 EAQSRIETLRRSLEITTEELEMIRPLEKSRSASRSELLLVEAKYNDIRGALESTRLAIPRLEAALSEIGRRRTERIEAFRGDALQRLSSARVEHSALQETSRASEDKVARTTVRAPTDGIIKTVHVTTPGQVVQPGHSLVEIVPVNDTLLVEAQVRPQDIAFLRPGQDALVKITAYDFSIYGGLVAKLEHIGADSISTEKGETYYLIRVRTAKAHLAHGSSTLPIMPGMVAEVDVITGSKTVMGYLTKPLVRMRQTALRER 816
            E +SR+   R S  +  EELE+ R L K R  S++ELL +E + ND++G +E TRLA+ R+E+ + E  +R       FR DAL+ LS+ + E + L++  RA ED+V RT +R+P  GI+K ++V T G VV PG  LVE+VP+ DTLL+EA +RP DIAF+RPGQ A VKITAYD+SIYGGL  ++EHI AD+I+ +KGE++YLIRVRT + +L      L I+PGM AEVD++TG KTV+ YL KP+++ R  ALRER
Sbjct:  165 ELRSRLAQTRESYRLVKEELELTRRLAKQRLVSKTELLRLERQANDLKGEIEQTRLAVERVESGVREAYQRIENAYSKFRSDALRELSTLQSELAGLEQIVRAGEDRVRRTELRSPVRGIVKKIYVNTRGGVVAPGERLVEVVPLEDTLLIEANIRPTDIAFIRPGQQATVKITAYDYSIYGGLEGRVEHISADTITNDKGESFYLIRVRTDRNYLGSEEKPLAIIPGMTAEVDILTGRKTVLDYLLKPVLKARYNALRER 425          
BLAST of mRNA_P-wetherbeei_contig16993.1.1 vs. uniprot
Match: A0A7C3PYA2_9BACT (HlyD family type I secretion periplasmic adaptor subunit n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7C3PYA2_9BACT)

HSP 1 Score: 250 bits (638), Expect = 2.130e-77
Identity = 143/271 (52.77%), Postives = 186/271 (68.63%), Query Frame = 1
Query:   13 QRAQEIKEAQSRIETLRRSLEITTEELEMIRPLEKSRSASRSELLLVEAKYNDIRGALESTRLAIPRLEAALSEIGRRRTERIEAFRGDALQRLSSARVEHSALQETSRASEDKVARTTVRAPTDGIIKTVHVTTPGQVVQPGHSLVEIVPVNDTLLVEAQVRPQDIAFLRPGQDALVKITAYDFSIYGGLVAKLEHIGADSISTEKG---ETYYLIRVRTAKAHLAHGSSTLPIMPGMVAEVDVITGSKTVMGYLTKPLVRMRQTALRER 816
            QR+QE+KE +SRI  +  SL+I  +EL M RPL K  + S  ELL +E + ND++G LE+T+LAIPRLE+A++E   +    +  FRGDAL  L+  R E      T  A +D+V R  VR+P  G +K+V VTT G VVQPG  L+EIVP+ D LL+EA+V+P+DIA+LRPGQ+ALVKITAYDFSIYGG  AKLE+I ADSI  EK    E+YYL+RVRT  +  A     L I+PGM A V + TG KT + YL KP+++ R+ A RER
Sbjct:  162 QRSQELKEKRSRIVQINTSLDILNKELTMSRPLVKQGAMSEVELLRLERQANDLKGELEATKLAIPRLESAVAEAKNKLDSYVAKFRGDALAELNQVRAEQEGTAATGVALKDRVERAVVRSPVTGTVKSVKVTTIGGVVQPGSELLEIVPLEDNLLIEARVKPRDIAYLRPGQEALVKITAYDFSIYGGFPAKLEYISADSILDEKKGDKESYYLVRVRTTSSTPARSDKPLAIIPGMTATVHIQTGEKTFLHYLLKPIIKTREMAFRER 432          
BLAST of mRNA_P-wetherbeei_contig16993.1.1 vs. uniprot
Match: UPI001BFE140C (HlyD family type I secretion periplasmic adaptor subunit n=1 Tax=Pseudomonas sp. DB1 TaxID=2822138 RepID=UPI001BFE140C)

HSP 1 Score: 250 bits (639), Expect = 2.470e-77
Identity = 137/268 (51.12%), Postives = 193/268 (72.01%), Query Frame = 1
Query:   13 QRAQEIKEAQSRIETLRRSLEITTEELEMIRPLEKSRSASRSELLLVEAKYNDIRGALESTRLAIPRLEAALSEIGRRRTERIEAFRGDALQRLSSARVEHSALQETSRASEDKVARTTVRAPTDGIIKTVHVTTPGQVVQPGHSLVEIVPVNDTLLVEAQVRPQDIAFLRPGQDALVKITAYDFSIYGGLVAKLEHIGADSISTEKGETYYLIRVRTAKAHLAHGSSTLPIMPGMVAEVDVITGSKTVMGYLTKPLVRMRQTALRER 816
            Q+ QE+ E +S+ +  R SL +  +EL M +PL KS + S+ E+L ++    + RG L +T LAIPR E+A++EI R+  E   +FR DA + L+  R E S +  TS+A +D+V+RTTV +P  GIIK + V T G VVQPG  LVE+VP+ D+LL+EA++RPQD+AFL PGQ A+VK +AYD++IYGG+ A LE IGAD+I+ E+G++YYLI+VRT K+HL      L I+PGM+A VD+ITG KTV+ YL KP+++ RQ A+RER
Sbjct:  183 QKTQELAEFRSKAQQYRSSLGLIQQELNMSQPLVKSGAISQVEILRLQRSAVETRGELNATTLAIPRAESAVAEIERKMEESRLSFRSDAFKELNEVRTELSKITSTSKAIDDRVSRTTVVSPVHGIIKQLKVNTIGGVVQPGSDLVEVVPLEDSLLIEARIRPQDVAFLHPGQKAMVKFSAYDYTIYGGMKANLELIGADTITDEEGKSYYLIQVRTEKSHLGKDDHPLLIIPGMIATVDIITGEKTVLDYLLKPVLKARQEAMRER 450          
BLAST of mRNA_P-wetherbeei_contig16993.1.1 vs. uniprot
Match: A0A1F4E5J9_9PROT (Membrane fusion protein (MFP) family protein n=6 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4E5J9_9PROT)

HSP 1 Score: 249 bits (636), Expect = 4.030e-77
Identity = 144/269 (53.53%), Postives = 185/269 (68.77%), Query Frame = 1
Query:   13 QRAQEIKEAQSRIETLRRSLEITTEELEMIRPLEKSRSASRSELLLVEAKYNDIRGALESTRLAIPRLEAALSEIGRRRTERIEAFRGDALQRLSSARVEHSALQETSRASEDKVARTTVRAPTDGIIKTVHVTTPGQVVQPGHSLVEIVPVNDTLLVEAQVRPQDIAFLRPGQDALVKITAYDFSIYGGLVAKLEHIGADSISTEK-GETYYLIRVRTAKAHLAHGSSTLPIMPGMVAEVDVITGSKTVMGYLTKPLVRMRQTALRER 816
            QR QE++E + R+  +  SLE   +EL M RPL K  + S  ELL +E + ND++G L+STR++IPRLE+A+SE  ++    +  FR DA   L+  R E      TS A +D+V R  VR+P +G +K+V VTT G VVQPG  L+EIVP+ D LLVEA+VRP+DIAFLRPGQDALVKITAYDFSIYGG  AKLEHI ADSI+ EK GE+YYL++VRT     A     L I+PGM A V + TG KT + YL KP+++ R+ A RER
Sbjct:  162 QRNQELREKRGRLTQINTSLEFLDKELSMSRPLVKQGAMSEVELLRLERQANDLKGELDSTRISIPRLESAVSEARQKLESYVAKFRADAQGDLNQVRAEQEGTAATSVALKDRVERAVVRSPVNGTVKSVKVTTIGGVVQPGSELMEIVPLEDNLLVEARVRPRDIAFLRPGQDALVKITAYDFSIYGGFPAKLEHISADSITDEKKGESYYLVQVRTTSNVPAARHEPLAIIPGMTATVHIQTGEKTFLHYLLKPIIKTREMAFRER 430          
BLAST of mRNA_P-wetherbeei_contig16993.1.1 vs. uniprot
Match: I1YG31_METFJ (Membrane fusion protein (MFP) family protein n=2 Tax=Methylophaga frappieri (strain ATCC BAA-2434 / DSM 25690 / JAM7) TaxID=754477 RepID=I1YG31_METFJ)

HSP 1 Score: 246 bits (628), Expect = 5.700e-77
Identity = 134/268 (50.00%), Postives = 186/268 (69.40%), Query Frame = 1
Query:   13 QRAQEIKEAQSRIETLRRSLEITTEELEMIRPLEKSRSASRSELLLVEAKYNDIRGALESTRLAIPRLEAALSEIGRRRTERIEAFRGDALQRLSSARVEHSALQETSRASEDKVARTTVRAPTDGIIKTVHVTTPGQVVQPGHSLVEIVPVNDTLLVEAQVRPQDIAFLRPGQDALVKITAYDFSIYGGLVAKLEHIGADSISTEKGETYYLIRVRTAKAHLAHGSSTLPIMPGMVAEVDVITGSKTVMGYLTKPLVRMRQTALRER 816
            QR QE+ E +++ + L+RS E++ +EL+M  PL      S  ELL ++   ND+RG +++ RLAIPR+++AL+E+ R+ TE    F+ +A + LS  + E++  +E+  A ED+V RT VRAP  G +K + + T G V+QPG  LVEIVPV D LL+EA +RP DIAFLRPGQDA+VK TAYDFSIYGGL AKLE I AD+I+ EK E++YLI +RT +  +      L I+PGM   VD++TG KTVM YL KP+++ +  ALRER
Sbjct:   79 QRQQELVERRAKQQQLQRSFELSNQELQMSEPLVAQGVMSEVELLRLKRTVNDLRGEMDANRLAIPRIQSALNEVQRKITEEKVRFQTEAARELSEVKAEYARTEESIFALEDRVTRTEVRAPVKGTVKRILLNTIGGVIQPGEDLVEIVPVEDNLLIEAHIRPSDIAFLRPGQDAMVKFTAYDFSIYGGLPAKLERISADTITNEKDESFYLIYLRTNQNTIESSKGNLEIIPGMTTTVDILTGKKTVMDYLLKPILKAKNEALRER 346          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16993.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V2SQC2_9HYPH9.220e-8051.12Membrane fusion protein (MFP) family protein n=1 T... [more]
UPI00193B24002.800e-7951.49HlyD family type I secretion periplasmic adaptor s... [more]
A0A0C2S2C6_PSEST6.280e-7953.16Membrane fusion protein (MFP) family protein n=5 T... [more]
UPI000F0672141.000e-7851.66HlyD family type I secretion periplasmic adaptor s... [more]
A0A848WEK2_9PROT3.170e-7852.61Membrane fusion protein (MFP) family protein n=1 T... [more]
A0A7V2WYK2_9PROT8.790e-7851.34Membrane fusion protein (MFP) family protein n=1 T... [more]
A0A7C3PYA2_9BACT2.130e-7752.77HlyD family type I secretion periplasmic adaptor s... [more]
UPI001BFE140C2.470e-7751.12HlyD family type I secretion periplasmic adaptor s... [more]
A0A1F4E5J9_9PROT4.030e-7753.53Membrane fusion protein (MFP) family protein n=6 T... [more]
I1YG31_METFJ5.700e-7750.00Membrane fusion protein (MFP) family protein n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16993contigP-wetherbeei_contig16993:648..1466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1005395.CSV86_24209
Preferred namelssD
PFAMsBiotin_lipoyl_2,HlyD,HlyD_3
Model size819
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K02022,ko:K12542
KEGG TC3.A.1.109.4,8.A.1
KEGG ModuleM00330
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.94e-77
EggNOG OGsCOG0845@1|root,COG0845@2|Bacteria,1MUI8@1224|Proteobacteria,1RNK4@1236|Gammaproteobacteria,1YW37@136845|Pseudomonas putida group
DescriptionTIGRFAM type I secretion membrane fusion protein, HlyD
Cds size819
COG categoryM
BRITEko00000,ko00002,ko02000,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186104.2907586-CDS-P-wetherbeei_contig16993:647..14661683186104.2907586-CDS-P-wetherbeei_contig16993:647..1466Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16993 648..1466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16993.1.1prot_P-wetherbeei_contig16993.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16993 648..1466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16993.1.1

>prot_P-wetherbeei_contig16993.1.1 ID=prot_P-wetherbeei_contig16993.1.1|Name=mRNA_P-wetherbeei_contig16993.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=273bp
MQEVQRAQEIKEAQSRIETLRRSLEITTEELEMIRPLEKSRSASRSELLL
VEAKYNDIRGALESTRLAIPRLEAALSEIGRRRTERIEAFRGDALQRLSS
ARVEHSALQETSRASEDKVARTTVRAPTDGIIKTVHVTTPGQVVQPGHSL
VEIVPVNDTLLVEAQVRPQDIAFLRPGQDALVKITAYDFSIYGGLVAKLE
HIGADSISTEKGETYYLIRVRTAKAHLAHGSSTLPIMPGMVAEVDVITGS
KTVMGYLTKPLVRMRQTALRER*
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mRNA from alignment at P-wetherbeei_contig16993:648..1466-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16993.1.1 ID=mRNA_P-wetherbeei_contig16993.1.1|Name=mRNA_P-wetherbeei_contig16993.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=819bp|location=Sequence derived from alignment at P-wetherbeei_contig16993:648..1466- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGAAGTGCAGCGTGCGCAGGAGATCAAGGAGGCGCAGTCGCGGAT CGAGACGCTGCGTCGGTCGCTCGAGATAACGACCGAGGAGCTGGAGATGA TCCGGCCGCTGGAGAAGTCGCGGTCCGCTTCGCGTTCCGAGCTTCTTCTC GTCGAGGCCAAGTACAATGACATCCGCGGTGCGCTGGAGTCGACGCGGCT GGCCATCCCGAGGCTCGAAGCCGCGTTGAGCGAGATTGGCCGCCGCCGCA CCGAACGCATCGAGGCGTTCCGCGGTGATGCGCTGCAGCGGCTATCGAGC GCGCGCGTGGAGCATTCAGCACTTCAGGAGACCAGCCGCGCCAGCGAGGA CAAGGTGGCGCGGACGACGGTACGCGCGCCGACCGACGGCATCATCAAGA CCGTGCACGTCACGACGCCCGGGCAGGTCGTGCAACCCGGTCACAGTCTC GTCGAGATCGTGCCGGTCAACGATACCCTTCTCGTCGAGGCGCAGGTCCG GCCGCAGGACATTGCGTTCCTGCGACCAGGTCAGGATGCGCTGGTCAAGA TCACCGCTTACGATTTCTCGATCTACGGCGGGCTGGTTGCCAAGCTGGAG CACATCGGCGCGGACAGCATCAGCACCGAAAAGGGCGAGACCTATTATCT GATCCGCGTCCGCACCGCGAAGGCGCACTTGGCCCACGGTAGTTCGACCT TGCCGATCATGCCGGGCATGGTCGCGGAGGTCGACGTCATCACGGGCTCG AAAACCGTGATGGGCTACCTGACGAAGCCGCTGGTACGCATGCGGCAGAC CGCGCTGCGCGAGCGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16993:648..1466-

>mRNA_P-wetherbeei_contig16993.1.1 ID=mRNA_P-wetherbeei_contig16993.1.1|Name=mRNA_P-wetherbeei_contig16993.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=819bp|location=Sequence derived from alignment at P-wetherbeei_contig16993:648..1466- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGAAGTGCAGCGTGCGCAGGAGATCAAGGAGGCGCAGTCGCGGAT
CGAGACGCTGCGTCGGTCGCTCGAGATAACGACCGAGGAGCTGGAGATGA
TCCGGCCGCTGGAGAAGTCGCGGTCCGCTTCGCGTTCCGAGCTTCTTCTC
GTCGAGGCCAAGTACAATGACATCCGCGGTGCGCTGGAGTCGACGCGGCT
GGCCATCCCGAGGCTCGAAGCCGCGTTGAGCGAGATTGGCCGCCGCCGCA
CCGAACGCATCGAGGCGTTCCGCGGTGATGCGCTGCAGCGGCTATCGAGC
GCGCGCGTGGAGCATTCAGCACTTCAGGAGACCAGCCGCGCCAGCGAGGA
CAAGGTGGCGCGGACGACGGTACGCGCGCCGACCGACGGCATCATCAAGA
CCGTGCACGTCACGACGCCCGGGCAGGTCGTGCAACCCGGTCACAGTCTC
GTCGAGATCGTGCCGGTCAACGATACCCTTCTCGTCGAGGCGCAGGTCCG
GCCGCAGGACATTGCGTTCCTGCGACCAGGTCAGGATGCGCTGGTCAAGA
TCACCGCTTACGATTTCTCGATCTACGGCGGGCTGGTTGCCAAGCTGGAG
CACATCGGCGCGGACAGCATCAGCACCGAAAAGGGCGAGACCTATTATCT
GATCCGCGTCCGCACCGCGAAGGCGCACTTGGCCCACGGTAGTTCGACCT
TGCCGATCATGCCGGGCATGGTCGCGGAGGTCGACGTCATCACGGGCTCG
AAAACCGTGATGGGCTACCTGACGAAGCCGCTGGTACGCATGCGGCAGAC
CGCGCTGCGCGAGCGTTGA
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