mRNA_P-wetherbeei_contig16991.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16991.1.1
Unique NamemRNA_P-wetherbeei_contig16991.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16991.1.1 vs. uniprot
Match: A0A7S1TX65_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TX65_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.130e-17
Identity = 37/69 (53.62%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:  565 FPRTLFRQR--YPLFICAVCGLNAAQYKCVGDRLADEDPLVLCEYCHYMLHYSTDGRLLYEDFELLPML 765
            FPR  +     +  + C VCG++AA+Y CVGDRLADE P   CE CHY LHY  DG  LY+D+EL P L
Sbjct:   63 FPRLAYAPMGDWKPYFCGVCGVDAARYACVGDRLADESPAFFCERCHYSLHYDVDGTALYDDYELYPAL 131
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BLAST of mRNA_P-wetherbeei_contig16991.1.1 vs. uniprot
Match: A0A2R6X9E4_MARPO (Uncharacterized protein n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X9E4_MARPO)

HSP 1 Score: 67.8 bits (164), Expect = 1.900e-8
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:  607 CAVCGLNAAQYKCVGDRLADEDPLVLCEYCHYMLHYSTDGRLLYEDFEL 753
            C++C +  A+   VGD+LA E P   CE C+Y+LHYS DG LLY DFE+
Sbjct:  464 CSICCIYQARKVTVGDKLAPESPCFFCENCYYLLHYSNDGSLLYNDFEV 512
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BLAST of mRNA_P-wetherbeei_contig16991.1.1 vs. uniprot
Match: A0A7C9EJ83_OPUST (Uncharacterized protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9EJ83_OPUST)

HSP 1 Score: 64.7 bits (156), Expect = 1.720e-7
Identity = 26/67 (38.81%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:  565 FPRTLFRQRYPLFICAVCGLNAAQYKCVGDRLADEDPLVLCEYCHYMLHYSTDGRLLYEDFELLPML 765
            +P T+++ +  L  C+VC +  A    + D+LA E+P   C+ C+Y+LHYS DG LLY  F++   L
Sbjct:  420 YPLTVYQPKAILKKCSVCHIYKATKVTLDDKLAGENPCYFCDNCYYLLHYSADGTLLYNKFQVYDYL 486
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BLAST of mRNA_P-wetherbeei_contig16991.1.1 vs. uniprot
Match: UPI0006449E4B (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006449E4B)

HSP 1 Score: 62.0 bits (149), Expect = 7.860e-7
Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:  607 CAVCGLNAAQYKCVGDRLADEDPLVLCEYCHYMLHYSTDGRLLYEDFELLP 759
            C +C +  +++  + D+L DE P   C+ C+  LHYS +GRLLY DF++ P
Sbjct:  291 CRICEIYPSKHVTIADKLMDESPYFFCDECYRTLHYSKEGRLLYNDFQVYP 341
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BLAST of mRNA_P-wetherbeei_contig16991.1.1 vs. uniprot
Match: A0A7I8KYM6_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KYM6_SPIIN)

HSP 1 Score: 62.0 bits (149), Expect = 1.240e-6
Identity = 27/83 (32.53%), Postives = 41/83 (49.40%), Query Frame = 1 
Query:  514 VADWEASAATAEPEGWRFPRTLFRQRYPLFICAVCGLNAAQYKCVGDRLADEDPLVLCEYCHYMLHYSTDGRLLYEDFELLPM 762
            + D     A  E     +P   +R R     C+VC +  +    V DR A  +P   C+ C+Y+LHYS DG LLY++F +  +
Sbjct:  395 IRDMRLVHADDEQNELSYPLATYRIRTRRSKCSVCNIKPSAMATVNDRWAARNPCFFCKDCYYLLHYSEDGSLLYDNFSVYDL 477
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BLAST of mRNA_P-wetherbeei_contig16991.1.1 vs. uniprot
Match: A0A200RAF6_9MAGN (snRNA-activating protein complex n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200RAF6_9MAGN)

HSP 1 Score: 60.8 bits (146), Expect = 3.110e-6
Identity = 24/63 (38.10%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:  565 FPRTLFRQRYPLFICAVCGLNAAQYKCVGDRLADEDPLVLCEYCHYMLHYSTDGRLLYEDFEL 753
            +P  +F+ +     C+VC +  A    V D+ A E+P   C+ C+Y+LHY+ DG LLYE+F +
Sbjct:  470 YPVLIFQLKSRFQKCSVCKIYRATKVTVDDKWAQENPCYFCDNCYYLLHYTEDGSLLYEEFTV 532
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BLAST of mRNA_P-wetherbeei_contig16991.1.1 vs. uniprot
Match: UPI0002C34454 (snRNA-activating protein complex subunit-like isoform X1 n=2 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0002C34454)

HSP 1 Score: 60.8 bits (146), Expect = 3.350e-6
Identity = 24/63 (38.10%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:  565 FPRTLFRQRYPLFICAVCGLNAAQYKCVGDRLADEDPLVLCEYCHYMLHYSTDGRLLYEDFEL 753
            +P  LF+ +  +  C VC +  A    V D+ A E+P   C+ C+++LHY+ DG L Y+DFE+
Sbjct:  533 YPILLFQLKLHVQKCKVCRIYRATKMTVNDKWAPENPCYFCDNCYFLLHYTQDGSLQYQDFEV 595
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BLAST of mRNA_P-wetherbeei_contig16991.1.1 vs. uniprot
Match: UPI000B772092 (snRNA-activating protein complex subunit n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B772092)

HSP 1 Score: 60.5 bits (145), Expect = 3.820e-6
Identity = 24/68 (35.29%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:  550 PEGWRFPRTLFRQRYPLFICAVCGLNAAQYKCVGDRLADEDPLVLCEYCHYMLHYSTDGRLLYEDFEL 753
            P+   +P  +++ +  L  C+VC +  A    + D+LA E+P   C+ C+Y+LHYS +G LLY  F++
Sbjct:  415 PKRAAYPLLVYQLKTVLKKCSVCRIYKATKVTLDDKLAGENPCYFCDNCYYLLHYSEEGTLLYNTFQV 482
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BLAST of mRNA_P-wetherbeei_contig16991.1.1 vs. uniprot
Match: A0A0A0M3U8_CUCSA (Uncharacterized protein n=8 Tax=Cucumis TaxID=3655 RepID=A0A0A0M3U8_CUCSA)

HSP 1 Score: 59.3 bits (142), Expect = 8.550e-6
Identity = 24/61 (39.34%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:  565 FPRTLFRQRYPLFICAVCGLNAAQYKCVGDRLADEDPLVLCEYCHYMLHYSTDGRLLYEDF 747
            +P   F+ R     C VC +  A+   + D+ A E+P   CE C+++LHYS +G LLY DF
Sbjct:  400 YPIVTFQLRTRAQKCDVCNIYRAKKVTIDDKWAQENPCYFCEDCYFLLHYSKEGNLLYNDF 460
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BLAST of mRNA_P-wetherbeei_contig16991.1.1 vs. uniprot
Match: A0A6J1KH64_CUCMA (snRNA-activating protein complex subunit n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1KH64_CUCMA)

HSP 1 Score: 59.3 bits (142), Expect = 8.550e-6
Identity = 24/61 (39.34%), Postives = 36/61 (59.02%), Query Frame = 1 
Query:  565 FPRTLFRQRYPLFICAVCGLNAAQYKCVGDRLADEDPLVLCEYCHYMLHYSTDGRLLYEDF 747
            +P   F+ R  +  C VC +  A+   + D+ A E+P   CE C+++LHYS +G LLY DF
Sbjct:  400 YPIVTFQLRTRVQKCDVCNIYRAKKVTLDDKWAQENPCYFCEDCYFLLHYSKEGNLLYNDF 460
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16991.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A7S1TX65_9STRA1.130e-1753.62Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2R6X9E4_MARPO1.900e-853.06Uncharacterized protein n=3 Tax=Marchantia polymor... [more]
A0A7C9EJ83_OPUST1.720e-738.81Uncharacterized protein n=1 Tax=Opuntia streptacan... [more]
UPI0006449E4B7.860e-741.18hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A7I8KYM6_SPIIN1.240e-632.53Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
A0A200RAF6_9MAGN3.110e-638.10snRNA-activating protein complex n=1 Tax=Macleaya ... [more]
UPI0002C344543.350e-638.10snRNA-activating protein complex subunit-like isof... [more]
UPI000B7720923.820e-635.29snRNA-activating protein complex subunit n=1 Tax=C... [more]
A0A0A0M3U8_CUCSA8.550e-639.34Uncharacterized protein n=8 Tax=Cucumis TaxID=3655... [more]
A0A6J1KH64_CUCMA8.550e-639.34snRNA-activating protein complex subunit n=3 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16991contigP-wetherbeei_contig16991:2..1402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog78898.MVEG_02605T0
PFAMszf-SNAP50_C
Model size1401
Max annot lvl4751|Fungi
KEGG koko:K15210
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.41e-12
EggNOG OGsKOG2664@1|root,KOG2664@2759|Eukaryota,38ETS@33154|Opisthokonta,3P61A@4751|Fungi
DescriptionsnRNA-activating protein of 50kDa MW C terminal
Cds size750
COG categoryK
BRITEko00000,ko03021
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186104.2414894-UTR-P-wetherbeei_contig16991:1..6311683186104.2414894-UTR-P-wetherbeei_contig16991:1..631Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16991 2..631 -
1683186104.2654366-UTR-P-wetherbeei_contig16991:1381..14021683186104.2654366-UTR-P-wetherbeei_contig16991:1381..1402Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16991 1382..1402 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186104.2519183-CDS-P-wetherbeei_contig16991:631..13811683186104.2519183-CDS-P-wetherbeei_contig16991:631..1381Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16991 632..1381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16991.1.1prot_P-wetherbeei_contig16991.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16991 632..1381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16991.1.1

>prot_P-wetherbeei_contig16991.1.1 ID=prot_P-wetherbeei_contig16991.1.1|Name=mRNA_P-wetherbeei_contig16991.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=250bp
MQKRMKLLADADDLPPLRVLPMSATPVEALGADLGMRYTLHHHQACAHDV
VFKSIRFLHGMGPGSSSVSGVGAAAAATAAVAETETAAAAGEPGAVAAAN
AATAAAAVAAAVAGGFAPAGGDGERSDAGCPAKTATPAAAGGTAAEATAA
AASDAASEAARDGPVADWEASAATAEPEGWRFPRTLFRQRYPLFICAVCG
LNAAQYKCVGDRLADEDPLVLCEYCHYMLHYSTDGRLLYEDFELLPMLG*
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mRNA from alignment at P-wetherbeei_contig16991:2..1402-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16991.1.1 ID=mRNA_P-wetherbeei_contig16991.1.1|Name=mRNA_P-wetherbeei_contig16991.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1401bp|location=Sequence derived from alignment at P-wetherbeei_contig16991:2..1402- (Phaeothamnion wetherbeei SAG_119_79)
AAGGTGCTGGAGCGGACGCGGATGCAGAAGCGGATGAAGCTGCTCGCCGA
CGCGGACGACCTGCCACCGCTGCGGGTGCTGCCGATGTCGGCCACACCTG
TCGAGGCGCTCGGCGCCGACCTCGGGATGCGCTACACGCTCCATCACCAC
CAGGCGTGCGCCCACGACGTCGTCTTCAAGAGCATCCGCTTCCTTCATGG
CATGGGCCCCGGCTCCAGCTCCGTCTCCGGTGTTGGCGCTGCGGCGGCGG
CGACGGCGGCGGTTGCGGAAACGGAGACGGCGGCGGCGGCAGGTGAGCCG
GGAGCCGTCGCGGCCGCTAACGCCGCCACTGCTGCTGCGGCTGTTGCTGC
CGCCGTCGCTGGAGGTTTCGCACCTGCTGGCGGTGACGGCGAGCGTTCCG
ACGCCGGATGCCCGGCAAAGACCGCAACTCCGGCTGCCGCGGGCGGCACT
GCCGCTGAAGCTACGGCGGCGGCGGCCAGCGATGCTGCTTCAGAGGCGGC
CAGAGACGGCCCGGTGGCAGACTGGGAGGCCTCGGCGGCGACGGCGGAGC
CGGAAGGGTGGCGCTTCCCGCGGACGCTGTTCCGGCAGCGCTATCCGCTG
TTCATCTGCGCGGTGTGCGGGCTAAACGCGGCGCAGTACAAGTGCGTCGG
CGACCGCCTTGCCGATGAAGACCCCTTGGTGCTGTGCGAGTACTGCCACT
ACATGCTGCACTACTCGACGGACGGTCGCCTCCTCTACGAAGACTTCGAG
CTGCTGCCCATGCTCGGATAAGTGGCCGTGACTTGCGTCATGCGGGTTTG
GGTTCGGAGTTCGATATGAGACGATGCTGCGCCGACGGCGGTTCCAACGG
CTGTGGTGGCCGCCGGCTGTGGCCGCTTGGGTTGTTCCAATGGCTGTGGT
TGGCGGCGGCCGGCGCGGCGACGGCCGGCGGCGTTGGCCCATGAGCCGCG
GCCGGGCGGCTTTTGTCGACACTGTCTGCGGTGGCGGCTGGTTGCGGTCG
GCGGCGGTCAGCCGCAGCTGGTGGCGGCCTGCGGCGGGAAGCGATGCATG
CTGACGGGGACTTGGCTGGCGCTGGCGGCTGGCCGCTATTGCCGGCGACG
ACGGCCATGCATCTGGCGCCAATAATATCCTGGTCGCGTGGTAGTGTCGC
AGTTCCATTCACCGATGCGGGTTCATATTCACCGTGCGGTTGTTTGCTGC
TTCGGGGACGATCTCTGGCGCCTCCACCCGTATCTTTGGGGCCCGCCACC
GATGCGCACTTTGGTGGCGCTTCGGCAAAGGTTGGAGGCCTGCCCTGTCG
TTTGCGAAAAAAAAACCGTTATGGCAGAAAGGCCCGGAGGCTTGGCAAAA
CCATCCTCGAGATGTGGGGTGCGCAGGCGAGGCATGTGCAGGCAACAGAG
C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16991:2..1402-

>mRNA_P-wetherbeei_contig16991.1.1 ID=mRNA_P-wetherbeei_contig16991.1.1|Name=mRNA_P-wetherbeei_contig16991.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=750bp|location=Sequence derived from alignment at P-wetherbeei_contig16991:2..1402- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGAAGCGGATGAAGCTGCTCGCCGACGCGGACGACCTGCCACCGCT
GCGGGTGCTGCCGATGTCGGCCACACCTGTCGAGGCGCTCGGCGCCGACC
TCGGGATGCGCTACACGCTCCATCACCACCAGGCGTGCGCCCACGACGTC
GTCTTCAAGAGCATCCGCTTCCTTCATGGCATGGGCCCCGGCTCCAGCTC
CGTCTCCGGTGTTGGCGCTGCGGCGGCGGCGACGGCGGCGGTTGCGGAAA
CGGAGACGGCGGCGGCGGCAGGTGAGCCGGGAGCCGTCGCGGCCGCTAAC
GCCGCCACTGCTGCTGCGGCTGTTGCTGCCGCCGTCGCTGGAGGTTTCGC
ACCTGCTGGCGGTGACGGCGAGCGTTCCGACGCCGGATGCCCGGCAAAGA
CCGCAACTCCGGCTGCCGCGGGCGGCACTGCCGCTGAAGCTACGGCGGCG
GCGGCCAGCGATGCTGCTTCAGAGGCGGCCAGAGACGGCCCGGTGGCAGA
CTGGGAGGCCTCGGCGGCGACGGCGGAGCCGGAAGGGTGGCGCTTCCCGC
GGACGCTGTTCCGGCAGCGCTATCCGCTGTTCATCTGCGCGGTGTGCGGG
CTAAACGCGGCGCAGTACAAGTGCGTCGGCGACCGCCTTGCCGATGAAGA
CCCCTTGGTGCTGTGCGAGTACTGCCACTACATGCTGCACTACTCGACGG
ACGGTCGCCTCCTCTACGAAGACTTCGAGCTGCTGCCCATGCTCGGATAA
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