mRNA_P-wetherbeei_contig16989.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16989.1.1
Unique NamemRNA_P-wetherbeei_contig16989.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16989.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16989contigP-wetherbeei_contig16989:193..516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog88036.EFJ34019
PFAMsFKBP_C,TPR_2,TPR_8
Model size324
Max annot lvl35493|Streptophyta
KEGG koko:K09571
KEGG Pathwayko04915,map04915
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000175
EggNOG OGsCOG0545@1|root,KOG0543@2759|Eukaryota,37NZ6@33090|Viridiplantae,3GCXP@35493|Streptophyta
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-19_003610.1
EC5.2.1.8
Descriptionpeptidyl-prolyl isomerase
Cds size324
COG categoryO
BRITEko00000,ko00001,ko01000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186104.0687456-CDS-P-wetherbeei_contig16989:192..5161683186104.0687456-CDS-P-wetherbeei_contig16989:192..516Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16989 193..516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16989.1.1prot_P-wetherbeei_contig16989.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16989 193..516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16989.1.1

>prot_P-wetherbeei_contig16989.1.1 ID=prot_P-wetherbeei_contig16989.1.1|Name=mRNA_P-wetherbeei_contig16989.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp
RVLGNEAFEAGDLRLAVEKYQAALDLVRARTGPEARAIASPCRKNAAAVL
LKLEEFELAARLCDEELEDGCSGRTDGGGGGGGSSKVLLFRGFARCRMGR
FDEAVADL
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mRNA from alignment at P-wetherbeei_contig16989:193..516-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16989.1.1 ID=mRNA_P-wetherbeei_contig16989.1.1|Name=mRNA_P-wetherbeei_contig16989.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig16989:193..516- (Phaeothamnion wetherbeei SAG_119_79)
AGGGTGCTGGGAAATGAAGCCTTCGAGGCCGGCGACCTCAGACTCGCCGT
CGAAAAGTACCAGGCGGCTCTCGACCTGGTGCGCGCCCGGACGGGTCCCG
AGGCGCGCGCGATCGCGTCGCCGTGCCGCAAGAACGCCGCCGCCGTCCTC
CTCAAGCTGGAAGAGTTCGAGCTGGCCGCACGTCTCTGTGATGAGGAGCT
GGAGGATGGCTGCAGCGGCAGAACCGATGGCGGCGGCGGCGGCGGCGGCA
GCTCCAAGGTGCTCCTCTTTCGCGGCTTTGCGCGATGCCGCATGGGGCGG
TTTGACGAAGCGGTGGCCGACCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16989:193..516-

>mRNA_P-wetherbeei_contig16989.1.1 ID=mRNA_P-wetherbeei_contig16989.1.1|Name=mRNA_P-wetherbeei_contig16989.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig16989:193..516- (Phaeothamnion wetherbeei SAG_119_79)
AGGGTGCTGGGAAATGAAGCCTTCGAGGCCGGCGACCTCAGACTCGCCGT
CGAAAAGTACCAGGCGGCTCTCGACCTGGTGCGCGCCCGGACGGGTCCCG
AGGCGCGCGCGATCGCGTCGCCGTGCCGCAAGAACGCCGCCGCCGTCCTC
CTCAAGCTGGAAGAGTTCGAGCTGGCCGCACGTCTCTGTGATGAGGAGCT
GGAGGATGGCTGCAGCGGCAGAACCGATGGCGGCGGCGGCGGCGGCGGCA
GCTCCAAGGTGCTCCTCTTTCGCGGCTTTGCGCGATGCCGCATGGGGCGG
TTTGACGAAGCGGTGGCCGACCTG
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