mRNA_P-wetherbeei_contig16968.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16968.1.1
Unique NamemRNA_P-wetherbeei_contig16968.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16968.1.1 vs. uniprot
Match: A0A836C819_9STRA (Amine oxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C819_9STRA)

HSP 1 Score: 147 bits (371), Expect = 3.820e-40
Identity = 75/97 (77.32%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    4 VAVVGAGVAGLTCARALSQAGIDVRVYESSDDVGGRVRTDVVDGFLLDRGFQVFIEEYPEVRRQLDYEALNLKRFEPGALVRCDGGLHLVSDPLRRP 294
            VAV+GAGVAGL CAR L +AG+ V V E+SD VGGRVRTD VDGFLLDRGFQVFIE YPEV+R LDY  L L++F PGALVRCDGGL LVSDPLRRP
Sbjct:   27 VAVIGAGVAGLVCARKLHRAGLKVLVLEASDGVGGRVRTDEVDGFLLDRGFQVFIEAYPEVQRHLDYSKLELQQFLPGALVRCDGGLQLVSDPLRRP 123
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BLAST of mRNA_P-wetherbeei_contig16968.1.1 vs. uniprot
Match: A0A6H5KRL4_9PHAE (Amino_oxidase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRL4_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 7.660e-40
Identity = 70/101 (69.31%), Postives = 85/101 (84.16%), Query Frame = 1 
Query:    1 QVAVVGAGVAGLTCARALSQAGIDVRVYESSDDVGGRVRTDVVDGFLLDRGFQVFIEEYPEVRRQLDYEALNLKRFEPGALVRCDGGLHLVSDPLRRPGYV 303
            +VA++GAGVAGL CAR L++ G  VR+ E+SD VGGRVRTD VDGFLLDRGFQVFIE YPE  RQL+YE L L++F+PGA+VR DGG HLVSDP+R+PG +
Sbjct:   11 RVAIIGAGVAGLVCARILTRGGFSVRLLEASDGVGGRVRTDEVDGFLLDRGFQVFIEAYPEPTRQLNYETLKLQKFDPGAIVRYDGGFHLVSDPIRKPGAI 111
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BLAST of mRNA_P-wetherbeei_contig16968.1.1 vs. uniprot
Match: UPI00194EBFA7 (FAD-dependent oxidoreductase n=2 Tax=Archangium violaceum TaxID=83451 RepID=UPI00194EBFA7)

HSP 1 Score: 134 bits (336), Expect = 1.990e-35
Identity = 70/98 (71.43%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:    1 QVAVVGAGVAGLTCARALSQAGIDVRVYESSDDVGGRVRTDVVDGFLLDRGFQVFIEEYPEVRRQLDYEALNLKRFEPGALVRCDGGLHLVSDPLRRP 294
            +V VVGAG+AGLTCAR L QA   VRV E+SD VGGR RTDVVDGFLLDRGFQVF+  YPE +R LDYEAL+ +RF PGALV  +G LH V+DPLRRP
Sbjct:    5 EVIVVGAGLAGLTCARVLQQAKAKVRVLEASDGVGGRARTDVVDGFLLDRGFQVFLMAYPEPQRWLDYEALDFQRFFPGALVWREGKLHQVADPLRRP 102
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BLAST of mRNA_P-wetherbeei_contig16968.1.1 vs. uniprot
Match: A0A2E0ASH1_9BACT (Amino_oxidase domain-containing protein n=2 Tax=Planctomycetia TaxID=203683 RepID=A0A2E0ASH1_9BACT)

HSP 1 Score: 133 bits (335), Expect = 2.610e-35
Identity = 64/101 (63.37%), Postives = 76/101 (75.25%), Query Frame = 1 
Query:    1 QVAVVGAGVAGLTCARALSQAGIDVRVYESSDDVGGRVRTDVVDGFLLDRGFQVFIEEYPEVRRQLDYEALNLKRFEPGALVRCDGGLHLVSDPLRRPGYV 303
            QV ++GAG+AGL C   L +AGI  R++E+SD VGGR RTD+VDGFLLDRGFQV +  YPE +R LDYEAL L+ FEPGALVRC G  H   DP RRP +V
Sbjct:    4 QVGIIGAGLAGLCCGLRLQEAGISFRIFEASDGVGGRARTDIVDGFLLDRGFQVLLTAYPEAQRVLDYEALQLRSFEPGALVRCGGKFHRFVDPWRRPQHV 104
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BLAST of mRNA_P-wetherbeei_contig16968.1.1 vs. uniprot
Match: A0A257LHA7_9BACT (Amine oxidase (Fragment) n=1 Tax=Verrucomicrobiales bacterium VVV1 TaxID=2015575 RepID=A0A257LHA7_9BACT)

HSP 1 Score: 124 bits (312), Expect = 7.310e-35
Identity = 63/98 (64.29%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:    4 VAVVGAGVAGLTCARALSQAGIDVRVYESSDDVGGRVRTDVVDGFLLDRGFQVFIEEYPEVRRQLDYEALNLKRFEPGALVRCDGGLHLVSDPLRRPG 297
            V ++GAG+AGLTCAR L   G+D  V E+ D VGGRVRTDV+DGF LDRGFQV +  YP  R+ LDYE L LKRF  GALV CDG  H VSDP R PG
Sbjct:    4 VVIIGAGLAGLTCARRLQADGVDCVVLEAGDAVGGRVRTDVIDGFRLDRGFQVLLTAYPAARKWLDYERLELKRFSAGALVWCDGCRHRVSDPWRDPG 101
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BLAST of mRNA_P-wetherbeei_contig16968.1.1 vs. uniprot
Match: A0A6I3C542_9ACTN (NAD(P)-binding protein n=4 Tax=root TaxID=1 RepID=A0A6I3C542_9ACTN)

HSP 1 Score: 131 bits (330), Expect = 1.430e-34
Identity = 65/97 (67.01%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:    4 VAVVGAGVAGLTCARALSQAGIDVRVYESSDDVGGRVRTDVVDGFLLDRGFQVFIEEYPEVRRQLDYEALNLKRFEPGALVRCDGGLHLVSDPLRRP 294
            V +VGAG+AGL CA+ L +AGID +V E+SD VGGRVRTD +DGFLLDRGFQV +  YP+V+R+LD +AL L+RF+PGALVR  GG H V DPLRRP
Sbjct:    4 VVIVGAGLAGLACAQDLVRAGIDCQVLEASDGVGGRVRTDNIDGFLLDRGFQVVLTGYPQVQRRLDMDALELRRFDPGALVRVRGGFHRVGDPLRRP 100
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BLAST of mRNA_P-wetherbeei_contig16968.1.1 vs. uniprot
Match: A0A1L9AUA3_9DELT (Amine oxidase n=4 Tax=Cystobacter TaxID=42 RepID=A0A1L9AUA3_9DELT)

HSP 1 Score: 130 bits (328), Expect = 2.920e-34
Identity = 68/97 (70.10%), Postives = 77/97 (79.38%), Query Frame = 1 
Query:    4 VAVVGAGVAGLTCARALSQAGIDVRVYESSDDVGGRVRTDVVDGFLLDRGFQVFIEEYPEVRRQLDYEALNLKRFEPGALVRCDGGLHLVSDPLRRP 294
            V VVGAG+AGLTCAR L QA + VRV E+SD VGGRVRTD VDGFLLDRGFQVF+  YPE  R LDY AL+L+RF PGA V  +G +HLV+DP RRP
Sbjct:    6 VIVVGAGLAGLTCARLLHQARVKVRVLEASDGVGGRVRTDTVDGFLLDRGFQVFLTAYPEPPRWLDYRALDLRRFFPGARVWREGRMHLVADPFRRP 102
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BLAST of mRNA_P-wetherbeei_contig16968.1.1 vs. uniprot
Match: A0A7Y2YSW2_9BACT (FAD-dependent oxidoreductase n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7Y2YSW2_9BACT)

HSP 1 Score: 130 bits (328), Expect = 2.920e-34
Identity = 64/98 (65.31%), Postives = 76/98 (77.55%), Query Frame = 1 
Query:    4 VAVVGAGVAGLTCARALSQAGIDVRVYESSDDVGGRVRTDVVDGFLLDRGFQVFIEEYPEVRRQLDYEALNLKRFEPGALVRCDGGLHLVSDPLRRPG 297
            V +VGAG+AGLTCAR L+  G+   V E++DD+GGRVRTD VDGFLLDRGFQV +  YP  R+ LDY+ L L+ FEPGALVR + G HLVSDP RRPG
Sbjct:    9 VLIVGAGLAGLTCARELASHGLTPLVLEAADDIGGRVRTDSVDGFLLDRGFQVLLTAYPLTRQTLDYDRLRLRAFEPGALVRIESGFHLVSDPFRRPG 106
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BLAST of mRNA_P-wetherbeei_contig16968.1.1 vs. uniprot
Match: UPI00193B5D4B (FAD-dependent oxidoreductase n=1 Tax=Archangium violaceum TaxID=83451 RepID=UPI00193B5D4B)

HSP 1 Score: 130 bits (327), Expect = 4.090e-34
Identity = 68/97 (70.10%), Postives = 78/97 (80.41%), Query Frame = 1 
Query:    4 VAVVGAGVAGLTCARALSQAGIDVRVYESSDDVGGRVRTDVVDGFLLDRGFQVFIEEYPEVRRQLDYEALNLKRFEPGALVRCDGGLHLVSDPLRRP 294
            V VVGAG+AGLTCAR L QA + VRV E+SD VGGRVRTDVV+GF LDRGFQVF+  YPE RR LDY+AL+ +RF PGALV  +G LH V+DP RRP
Sbjct:    6 VIVVGAGLAGLTCARLLHQAKVKVRVLEASDGVGGRVRTDVVEGFQLDRGFQVFLTAYPEPRRWLDYDALDFQRFFPGALVWREGCLHKVADPFRRP 102
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BLAST of mRNA_P-wetherbeei_contig16968.1.1 vs. uniprot
Match: A0A2T4VQE8_VITXG (Amine oxidase n=1 Tax=Vitiosangium sp. (strain GDMCC 1.1324) TaxID=2138576 RepID=A0A2T4VQE8_VITXG)

HSP 1 Score: 130 bits (326), Expect = 5.720e-34
Identity = 69/97 (71.13%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:    4 VAVVGAGVAGLTCARALSQAGIDVRVYESSDDVGGRVRTDVVDGFLLDRGFQVFIEEYPEVRRQLDYEALNLKRFEPGALVRCDGGLHLVSDPLRRP 294
            V VVGAG+AGLTCAR L QA + VRV E+SD VGGRVRTD V+GFLLDRGFQVF+  YPE RR LDYEAL  +RF PGA V   G LH V+DPLRRP
Sbjct:    6 VIVVGAGLAGLTCARLLHQAKVKVRVLEASDGVGGRVRTDAVEGFLLDRGFQVFLTAYPEPRRWLDYEALGFQRFFPGARVWRAGRLHQVADPLRRP 102
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16968.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C819_9STRA3.820e-4077.32Amine oxidase n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A6H5KRL4_9PHAE7.660e-4069.31Amino_oxidase domain-containing protein n=2 Tax=Ec... [more]
UPI00194EBFA71.990e-3571.43FAD-dependent oxidoreductase n=2 Tax=Archangium vi... [more]
A0A2E0ASH1_9BACT2.610e-3563.37Amino_oxidase domain-containing protein n=2 Tax=Pl... [more]
A0A257LHA7_9BACT7.310e-3564.29Amine oxidase (Fragment) n=1 Tax=Verrucomicrobiale... [more]
A0A6I3C542_9ACTN1.430e-3467.01NAD(P)-binding protein n=4 Tax=root TaxID=1 RepID=... [more]
A0A1L9AUA3_9DELT2.920e-3470.10Amine oxidase n=4 Tax=Cystobacter TaxID=42 RepID=A... [more]
A0A7Y2YSW2_9BACT2.920e-3465.31FAD-dependent oxidoreductase n=1 Tax=Gemmatimonade... [more]
UPI00193B5D4B4.090e-3470.10FAD-dependent oxidoreductase n=1 Tax=Archangium vi... [more]
A0A2T4VQE8_VITXG5.720e-3471.13Amine oxidase n=1 Tax=Vitiosangium sp. (strain GDM... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16968contigP-wetherbeei_contig16968:187..1042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FN60
PFAMsAmino_oxidase
Model size303
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue1.91e-39
EggNOG OGsCOG1233@1|root,2QSIC@2759|Eukaryota
DescriptionFlavin containing amine oxidoreductase
Cds size303
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186103.4182296-CDS-P-wetherbeei_contig16968:186..3301683186103.4182296-CDS-P-wetherbeei_contig16968:186..330Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16968 187..330 -
1683186103.428028-CDS-P-wetherbeei_contig16968:883..10421683186103.428028-CDS-P-wetherbeei_contig16968:883..1042Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16968 884..1042 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16968.1.1prot_P-wetherbeei_contig16968.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16968 187..1042 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16968.1.1

>prot_P-wetherbeei_contig16968.1.1 ID=prot_P-wetherbeei_contig16968.1.1|Name=mRNA_P-wetherbeei_contig16968.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
QVAVVGAGVAGLTCARALSQAGIDVRVYESSDDVGGRVRTDVVDGFLLDR
GFQVFIEEYPEVRRQLDYEALNLKRFEPGALVRCDGGLHLVSDPLRRPGY
V
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mRNA from alignment at P-wetherbeei_contig16968:187..1042-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16968.1.1 ID=mRNA_P-wetherbeei_contig16968.1.1|Name=mRNA_P-wetherbeei_contig16968.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=856bp|location=Sequence derived from alignment at P-wetherbeei_contig16968:187..1042- (Phaeothamnion wetherbeei SAG_119_79)
CAGGTGGCGGTGGTCGGGGCGGGCGTGGCGGGGCTGACGTGCGCGCGGGC
ATTGTCACAGGCCGGCATTGACGTGCGCGTATACGAATCGAGCGATGATG
TCGGCGGCCGCGTCCGCACCGACGTCGTGGACGGATTCCTCCTCGACCGC
GGATTCCAAGTGAGAGCCCGCCTGTCGTTTTCATCCGGTGTTTCCGAGTG
GTTCCTCAGGGTTTGGTGGTTTCGATTACGTTAAACACGGTTTTCCTTGT
CTCTGGGGCTGGCAACGGCGTCGGTGGCCGCGTCGGCACCGATGTCGTCA
GAGGATTCCTTTTGGACCGAGAGCTCCAGGTGTGATTTCAGTGTACTCGT
TTGAGTTGTCAGCAAGCGTTTCTGGGTCTGCCATTTCAATTGTGTTCAAC
GCTGCTGACGGTTTGTGTTGCAGTATAATGGGTTTCCTTTTCCCCGCTGA
GCAGTGCGTCAGTCCCATGTAGCGCGCGCTTGGCAGTGCATTTGTGTTGT
AGCATGAATAGTCTGCGTCACCGCTTCTGCACAAAGGCTCCCGTTCCCCT
TTTTGAAAGGAAATTGTCAGCCGGGGTTGATTTCCTGCCACTCGCTATCA
GAATCAAGAGAGGAGCGCCCAGTGACGGAATATATTTACCACGCAGGCGA
CCAATTTTGAGAGGAACGCAGTTAGCCAACCAACCGTGCACCACCACAAT
ATCTGCACACAGGTGTTCATCGAGGAGTACCCGGAGGTGCGGCGGCAGCT
GGACTATGAGGCTTTAAACCTGAAGCGCTTCGAGCCCGGGGCGCTCGTCC
GCTGCGACGGCGGCCTCCATCTCGTCTCCGACCCGCTGCGCCGGCCCGGG
TATGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16968:187..1042-

>mRNA_P-wetherbeei_contig16968.1.1 ID=mRNA_P-wetherbeei_contig16968.1.1|Name=mRNA_P-wetherbeei_contig16968.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig16968:187..1042- (Phaeothamnion wetherbeei SAG_119_79)
CAGGTGGCGGTGGTCGGGGCGGGCGTGGCGGGGCTGACGTGCGCGCGGGC
ATTGTCACAGGCCGGCATTGACGTGCGCGTATACGAATCGAGCGATGATG
TCGGCGGCCGCGTCCGCACCGACGTCGTGGACGGATTCCTCCTCGACCGC
GGATTCCAAGTGTTCATCGAGGAGTACCCGGAGGTGCGGCGGCAGCTGGA
CTATGAGGCTTTAAACCTGAAGCGCTTCGAGCCCGGGGCGCTCGTCCGCT
GCGACGGCGGCCTCCATCTCGTCTCCGACCCGCTGCGCCGGCCCGGGTAT
GTC
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