mRNA_P-wetherbeei_contig16924.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16924.1.1
Unique NamemRNA_P-wetherbeei_contig16924.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16924.1.1 vs. uniprot
Match: A0A7S1ZEY5_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZEY5_TRICV)

HSP 1 Score: 66.6 bits (161), Expect = 3.540e-13
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:   10 LDPTRILNINVAVVGHVDSGKTALVKALSTVLSTAALDKHPQ 135
            LDP+RILN+NV V+GHVDSGKT+LVK LST+LSTA+LDK  Q
Sbjct:   19 LDPSRILNLNVGVLGHVDSGKTSLVKTLSTLLSTASLDKSSQ 60
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BLAST of mRNA_P-wetherbeei_contig16924.1.1 vs. uniprot
Match: A0A7S4D6B4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6B4_HETAK)

HSP 1 Score: 67.0 bits (162), Expect = 5.130e-13
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:   13 DPTRILNINVAVVGHVDSGKTALVKALSTVLSTAALDKHPQ 135
            +  R+LN+NV V+GHVDSGKT+LVKALST LSTAALDKHPQ
Sbjct:    3 ESARLLNLNVGVLGHVDSGKTSLVKALSTHLSTAALDKHPQ 43
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BLAST of mRNA_P-wetherbeei_contig16924.1.1 vs. uniprot
Match: A0A7S2CQA7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CQA7_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 9.100e-13
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:   10 LDPTRILNINVAVVGHVDSGKTALVKALSTVLSTAALDKHPQ 135
            L    ILN+NV V+GHVD+GKT+LVKALST+LSTA+LDKHPQ
Sbjct:    4 LSTEEILNVNVGVLGHVDTGKTSLVKALSTLLSTASLDKHPQ 45
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BLAST of mRNA_P-wetherbeei_contig16924.1.1 vs. uniprot
Match: A0A7S0CTB3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CTB3_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 1.940e-12
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    4 EGLDPTRILNINVAVVGHVDSGKTALVKALSTVLSTAALDKHP 132
            E +  ++ILN+NV V+GHVDSGKT+LVKALST LSTAALDKHP
Sbjct:   12 ESVPVSKILNVNVGVLGHVDSGKTSLVKALSTELSTAALDKHP 54
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BLAST of mRNA_P-wetherbeei_contig16924.1.1 vs. uniprot
Match: A0A7S1SZG7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SZG7_9CHLO)

HSP 1 Score: 66.6 bits (161), Expect = 5.210e-12
Identity = 32/38 (84.21%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:   22 RILNINVAVVGHVDSGKTALVKALSTVLSTAALDKHPQ 135
            R+LNINV V+GHVDSGKT+LV+ALST LSTAALDKHPQ
Sbjct:   59 RLLNINVGVLGHVDSGKTSLVRALSTQLSTAALDKHPQ 96
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BLAST of mRNA_P-wetherbeei_contig16924.1.1 vs. uniprot
Match: A0A7S4M598_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M598_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 5.330e-12
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:   10 LDPTRILNINVAVVGHVDSGKTALVKALSTVLSTAALDKHPQ 135
            LDP+RILN+NV V+GHVDSGKT+LVK LST+LSTA+LDK  Q
Sbjct:   47 LDPSRILNLNVGVLGHVDSGKTSLVKTLSTLLSTASLDKSAQ 88
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BLAST of mRNA_P-wetherbeei_contig16924.1.1 vs. uniprot
Match: A0A835ZB77_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB77_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.290e-12
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:   19 TRILNINVAVVGHVDSGKTALVKALSTVLSTAALDKHPQ 135
            + ILN+NV V+GHVDSGKT+LV+ALSTVLSTAALDKHPQ
Sbjct:   25 SSILNVNVGVLGHVDSGKTSLVRALSTVLSTAALDKHPQ 63
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BLAST of mRNA_P-wetherbeei_contig16924.1.1 vs. uniprot
Match: L1IT02_GUITC (Tr-type G domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IT02_GUITC)

HSP 1 Score: 67.0 bits (162), Expect = 8.600e-12
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:   16 PTRILNINVAVVGHVDSGKTALVKALSTVLSTAALDKHPQ 135
            P ++LNINV V+GHVDSGKT+LV+ALS  LSTAALDKHPQ
Sbjct:   14 PAKVLNINVGVMGHVDSGKTSLVRALSKTLSTAALDKHPQ 53
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BLAST of mRNA_P-wetherbeei_contig16924.1.1 vs. uniprot
Match: A9V3Y9_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V3Y9_MONBE)

HSP 1 Score: 67.0 bits (162), Expect = 8.600e-12
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    7 GLDPTRILNINVAVVGHVDSGKTALVKALSTVLSTAALDKHPQ 135
            G+DP  ILN+NV V+GHVDSGKT+L KALSTV STAA DK+PQ
Sbjct:   11 GVDPGAILNLNVGVLGHVDSGKTSLAKALSTVASTAAFDKNPQ 53
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BLAST of mRNA_P-wetherbeei_contig16924.1.1 vs. uniprot
Match: A0A2K3DMJ6_CHLRE (Tr-type G domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DMJ6_CHLRE)

HSP 1 Score: 62.0 bits (149), Expect = 1.100e-11
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:   22 RILNINVAVVGHVDSGKTALVKALSTVLSTAALDKHPQ 135
            RILNINV V+GHVDSGKT+LV ALST LSTAALDKH Q
Sbjct:   13 RILNINVGVLGHVDSGKTSLVAALSTRLSTAALDKHLQ 50
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16924.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1ZEY5_TRICV3.540e-1376.19Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S4D6B4_HETAK5.130e-1378.05Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2CQA7_9STRA9.100e-1373.81Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S0CTB3_9EUKA1.940e-1274.42Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S1SZG7_9CHLO5.210e-1284.21Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A7S4M598_9STRA5.330e-1276.19Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
A0A835ZB77_9STRA6.290e-1282.05P-loop containing nucleoside triphosphate hydrolas... [more]
L1IT02_GUITC8.600e-1277.50Tr-type G domain-containing protein n=1 Tax=Guilla... [more]
A9V3Y9_MONBE8.600e-1274.42Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A2K3DMJ6_CHLRE1.100e-1184.21Tr-type G domain-containing protein n=1 Tax=Chlamy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16924contigP-wetherbeei_contig16924:19..153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog55529.EKX39029
Preferred nameSELB
PFAMsGTP_EFTU,GTP_EFTU_D2,RIBIOP_C
Model size135
Max annot lvl2759|Eukaryota
KEGG koko:K03833
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001514,GO:0006412,GO:0006414,GO:0006417,GO:0006451,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0032268,GO:0034248,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:1901564,GO:1901566,GO:1901576,GO:2000112
Exons1
Evalue1.41e-12
EggNOG OGsCOG3276@1|root,KOG0461@2759|Eukaryota
Descriptionselenocysteine incorporation
Cds size135
COG categoryJ
BRITEko00000,ko03012
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186102.1938586-CDS-P-wetherbeei_contig16924:18..1531683186102.1938586-CDS-P-wetherbeei_contig16924:18..153Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16924 19..153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16924.1.1prot_P-wetherbeei_contig16924.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16924 19..153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16924.1.1

>prot_P-wetherbeei_contig16924.1.1 ID=prot_P-wetherbeei_contig16924.1.1|Name=mRNA_P-wetherbeei_contig16924.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=45bp
MEGLDPTRILNINVAVVGHVDSGKTALVKALSTVLSTAALDKHPQ
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mRNA from alignment at P-wetherbeei_contig16924:19..153-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16924.1.1 ID=mRNA_P-wetherbeei_contig16924.1.1|Name=mRNA_P-wetherbeei_contig16924.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=135bp|location=Sequence derived from alignment at P-wetherbeei_contig16924:19..153- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGGGTTGGATCCTACGCGTATATTGAACATCAACGTCGCAGTGGT
AGGACACGTTGACAGTGGCAAAACAGCTCTAGTCAAAGCACTATCGACCG
TGCTGTCTACCGCCGCGCTAGACAAGCATCCTCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16924:19..153-

>mRNA_P-wetherbeei_contig16924.1.1 ID=mRNA_P-wetherbeei_contig16924.1.1|Name=mRNA_P-wetherbeei_contig16924.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=135bp|location=Sequence derived from alignment at P-wetherbeei_contig16924:19..153- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGGGTTGGATCCTACGCGTATATTGAACATCAACGTCGCAGTGGT
AGGACACGTTGACAGTGGCAAAACAGCTCTAGTCAAAGCACTATCGACCG
TGCTGTCTACCGCCGCGCTAGACAAGCATCCTCAG
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