mRNA_P-wetherbeei_contig1692.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1692.2.1
Unique NamemRNA_P-wetherbeei_contig1692.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1692.2.1 vs. uniprot
Match: D8LDP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP0_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 6.400e-34
Identity = 75/212 (35.38%), Postives = 111/212 (52.36%), Query Frame = 2
Query:   74 RESKNPFYVTSSEL--STTTTERRFNAPTVYKPSPRND-LGAGIDWSFMYTKESEQFGIGVPQSDSKLSAAIALQSSFAATARRRHCTRREPGACANDAQRGVAGAGDSXXXXXXXXXXXXEMRRQLPSDQASLDKLLERFDHRPRRENPLYTTTANEIGLRKPTGATFTFERSARQQGFSNSFNNVRYRDMGLSTSLTRSNVHKELDPQFL 700
            R+S NPF+ T++    ++   +  ++AP V++  P+ D + AGIDWSFMYT                                                                        R ++P D+ + D+LL+ F H  ++ENPLY+TT N+IG+++PTGATFTFER ARQQGFSNSFN +++RDMGL+T++TRSN+H +L+PQF+
Sbjct:    6 RDSSNPFFTTTNSRIGNSACQKHEYDAPPVFRKVPKVDRVAAGIDWSFMYT------------------------------------------------------------------------RNRVPEDKDARDELLKNFKHTSKKENPLYSTTNNDIGIKRPTGATFTFERRARQQGFSNSFNGLKFRDMGLNTNVTRSNIHDDLNPQFM 145          
BLAST of mRNA_P-wetherbeei_contig1692.2.1 vs. uniprot
Match: A0A6V2SUD9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2SUD9_HETAK)

HSP 1 Score: 127 bits (320), Expect = 1.270e-32
Identity = 81/216 (37.50%), Postives = 121/216 (56.02%), Query Frame = 2
Query:   74 RESKNPFYVTSSEL--STTTTERRFNAPTVYKPSPRNDL-----GAGIDWSFMYTKESEQFGIGVPQSDSKLSAAIALQSSFAATARRRHCTRREPGACANDAQRGVAGAGDSXXXXXXXXXXXXEMRRQLPSDQASLDKLLERFDHRPRRENPLYTTTANEIGLRKPTGATFTFERSARQQGFSNSFNNVRYRDMGLSTSLTRSNVHKELDPQFL 700
            RE+ NPF+ T++          + F AP VY+P  +N L     G   D+SFMY KES+  G  V  S+SKLSAA+ ++ +   TAR R     +     ++  + +  A  +             + R     +A +++ L RF+H P+ +NPLYTT+ N  G + PT ATFT +R++R Q FSNSFN + +RD GL+T++ +S VH +LDPQFL
Sbjct:   12 RETNNPFFQTNNNNYGMADFNSKDFEAPPVYRPQQKNQLDEDDDGYNPDFSFMYKKESDNIGGEVQSSESKLSAALKMKQTLGETARMRAAGLNQADPTISEEHKAIVEADST-------------LARAGRKTRAEVEEHLGRFEHAPKAQNPLYTTSNNMYGNKVPTPATFTADRASRIQKFSNSFNGMVHRDQGLNTAIIKSRVHSKLDPQFL 214          
BLAST of mRNA_P-wetherbeei_contig1692.2.1 vs. uniprot
Match: A0A8J2SKS3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SKS3_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.850e-25
Identity = 78/207 (37.68%), Postives = 110/207 (53.14%), Query Frame = 2
Query:   74 RESKNPFY-VTSSELSTT-TTERRFNAPTVYKPSPRNDLGAGIDWSFMYTKESEQFGIGVPQSDSKLSAAIALQSSFAATARRRHCTRREPGACANDAQRGVAGAGDSXXXXXXXXXXXXEMRRQLPSDQASLDKLLERFDHRPRRENPLYTTTANEIGLRKPTGATFTFERSARQQGFSNSFNNVRYRDMGLSTSLTRSNVHKELD 688
            R S NPF+  T+ ++    T E  + APTV +  PR  L    D+ F+Y K S+  G G   + S LS A+  Q + A   R +  T   P + A      +A A               E R   PS    ++++LE + H P++E+ +Y TT+N IG  KP  ATFT ER AR QGFSNSF  V+YR+ GL+T++T+SNVH  +D
Sbjct:   12 RRSDNPFFQTTTGDIGQDFTKEVEYAAPTVERAPPRRTLVDNYDFGFLYEKMSDDIGAGQHHAPSNLSRAMGAQDTPAQLTRLK--TMGAPASAAT-----IAAA---------------ESR---PSAADRVERILEIYKHAPKKEHEMYMTTSNVIGALKPNVATFTAERRARNQGFSNSFQGVKYRNQGLTTAVTKSNVHDMID 193          
BLAST of mRNA_P-wetherbeei_contig1692.2.1 vs. uniprot
Match: A0A7S1UKY3_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKY3_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.630e-24
Identity = 74/207 (35.75%), Postives = 115/207 (55.56%), Query Frame = 2
Query:   74 RESKNPFY-VTSSELSTTTTE--RRFNAPTVYKPSPRNDLGA-GIDWSFMYTKESEQFGIGVPQSDSKLSAAIALQSSFAATARRRHCTRREP-GACANDAQRGV--AGAGDSXXXXXXXXXXXXEMRRQLPSDQASLDKLLERFDHRPRRENPLYTTTANEIGLRKPTGATFTFERSARQQGFSNSFNNVRYRDMGLSTSLTRSNV 673
            R+S+NPF+  T+S++ ++  +  R  +AP V +P+ +  L   G D+SF+Y   S + G G+  SDSKLS ++                R EP G  A    RG+     GD              M+ Q+  ++ +++ LL  + H P+ E+ LY TT+N+IGL+KP+ AT+  ER +RQQ FSNSFN + YRD GL+TS+ +S +
Sbjct:   12 RDSRNPFFHTTTSDIGSSIVKAGREVDAPAVPRPAMKQTLREQGYDFSFLYKPASAEIGKGIGMSDSKLSESM---------------RREEPKGDIAFQRGRGLNPISPGDEMTLATVDPDGLASMK-QVGKEEVNVNSLLNSYRHAPKPEHALYPTTSNDIGLKKPSKATYVLERHSRQQRFSNSFNGILYRDQGLNTSMHKSKI 202          
BLAST of mRNA_P-wetherbeei_contig1692.2.1 vs. uniprot
Match: A0A7S3M5B3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M5B3_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.840e-14
Identity = 38/85 (44.71%), Postives = 57/85 (67.06%), Query Frame = 2
Query:  443 LPSDQASLDKLLERFDHRPRRENPLYTTTANEIGLRKPTGATFTFERSARQQGFSNSFNNVRYRDMGLSTSLTRSNVHKELDPQF 697
            L   + + + +L  + H P+ E+P YTT+ ++ G + P+ AT   +R+AR Q FS SFNNV+ ++  L+TS+TRSNVH  LDPQF
Sbjct:  140 LSPGKRTAENVLAVYKHEPKYEDPRYTTSTSDYGKKPPSVATLVVDRAARPQAFSRSFNNVKPQNTSLTTSITRSNVHSSLDPQF 224          
BLAST of mRNA_P-wetherbeei_contig1692.2.1 vs. uniprot
Match: A0A482T2A8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T2A8_9ARCH)

HSP 1 Score: 62.8 bits (151), Expect = 3.660e-8
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 2
Query:  533 NEIGLRKPTGATFTFERSARQQGFSNSFNNVRYRDMGLSTSLTRSNVHKELDPQF 697
            +E G + P+ AT   +R+ R QGFS SFNNV+ ++  L+T+LT+SNVH+ LDPQF
Sbjct:  167 SEYGKKAPSVATIVVDRAVRPQGFSKSFNNVKPKNTSLTTALTKSNVHRTLDPQF 221          
BLAST of mRNA_P-wetherbeei_contig1692.2.1 vs. uniprot
Match: A0A7S0WUE5_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WUE5_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 3.610e-5
Identity = 38/96 (39.58%), Postives = 49/96 (51.04%), Query Frame = 2
Query:  428 EMRRQLPSDQASL---DKLLERFD------HRPRRENPLYTTTANEIGLRKPTGATFTFERSARQQGFSNSFNNVRYRDMGLSTSLTRSNVHKELD 688
            E RR+ P         D L ERF       H PR+++P+Y TTANEIG + P+        +    GFS +F    Y+  GL T +TRS VHK LD
Sbjct:  104 EARRKGPDGFVKFGVRDALPERFADVTTRRHNPRKQHPVYETTANEIGRKPPSQLDMPDVYAGSAGGFSKTFAGP-YKARGLVTGITRSKVHKLLD 198          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1692.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LDP0_ECTSI6.400e-3435.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6V2SUD9_HETAK1.270e-3237.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J2SKS3_9STRA3.850e-2537.68Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1UKY3_9STRA2.630e-2435.75Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S3M5B3_9STRA2.840e-1444.71Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A482T2A8_9ARCH3.660e-852.73Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S0WUE5_9CHLO3.610e-539.58Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1692contigP-wetherbeei_contig1692:817..1773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog115417.EPrPW00000019612
Model size776
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.28e-08
EggNOG OGs2B3AP@1|root,2S0EH@2759|Eukaryota,1ME7C@121069|Pythiales
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_001390.1
Descriptionfunction. Source PGD
Cds size651
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186101.8235009-UTR-P-wetherbeei_contig1692:816..8681683186101.8235009-UTR-P-wetherbeei_contig1692:816..868Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1692 817..868 +
1683186101.8541849-UTR-P-wetherbeei_contig1692:1700..17731683186101.8541849-UTR-P-wetherbeei_contig1692:1700..1773Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1692 1701..1773 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186101.8342733-CDS-P-wetherbeei_contig1692:868..9701683186101.8342733-CDS-P-wetherbeei_contig1692:868..970Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1692 869..970 +
1683186101.8440127-CDS-P-wetherbeei_contig1692:1151..17001683186101.8440127-CDS-P-wetherbeei_contig1692:1151..1700Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1692 1152..1700 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1692.2.1prot_P-wetherbeei_contig1692.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1692 869..1700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1692.2.1

>prot_P-wetherbeei_contig1692.2.1 ID=prot_P-wetherbeei_contig1692.2.1|Name=mRNA_P-wetherbeei_contig1692.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=217bp
MRQKRPPRESKNPFYVTSSELSTTTTERRFNAPTVYKPSPRNDLGAGIDW
SFMYTKESEQFGIGVPQSDSKLSAAIALQSSFAATARRRHCTRREPGACA
NDAQRGVAGAGDSSSSSSENGGGGGEMRRQLPSDQASLDKLLERFDHRPR
RENPLYTTTANEIGLRKPTGATFTFERSARQQGFSNSFNNVRYRDMGLST
SLTRSNVHKELDPQFL*
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mRNA from alignment at P-wetherbeei_contig1692:817..1773+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1692.2.1 ID=mRNA_P-wetherbeei_contig1692.2.1|Name=mRNA_P-wetherbeei_contig1692.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=957bp|location=Sequence derived from alignment at P-wetherbeei_contig1692:817..1773+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGAAGCGCGTCGTCAGTGTCAGCTGGGATAATAGAGTGCCTTCTTCCG CCATGCGCCAAAAGCGTCCACCGCGGGAATCGAAGAACCCTTTTTATGTC ACGTCGTCGGAACTCAGCACCACCACGACGGAGCGACGATTTAATGCCCC GACGGTAAGCTGTAACACTTTTCACTAGTGTCGTTATTGGTTGATGCTTT GCCTGAGAAGGGACGGCACAGCACGTAGCGTCTTCTTTGCTCCTTTCAAC TAATAACGCAGAATTGCCCCAAGAAACTGTCTTAATGGAAGGAGAATTCC CTTGAATATGCAACCCCAAACCTCGGCCTGAACAGGTCTACAAGCCATCG CCACGAAATGACCTCGGCGCCGGGATCGACTGGAGTTTTATGTACACAAA GGAAAGCGAGCAGTTTGGCATCGGAGTGCCGCAGAGCGACAGCAAACTCA GCGCCGCGATAGCCTTGCAGAGCTCTTTCGCCGCCACCGCCAGACGCCGC CACTGCACTCGACGAGAGCCCGGCGCCTGCGCCAACGATGCGCAACGTGG CGTTGCTGGTGCCGGTGACAGCAGCAGCAGCAGCAGCGAAAACGGCGGCG GCGGCGGCGAAATGCGGCGGCAGTTGCCCAGCGACCAGGCTTCGCTCGAC AAGCTCCTGGAGCGCTTCGACCATCGGCCGCGGCGGGAGAACCCGCTCTA CACCACGACCGCCAACGAGATCGGCCTTCGAAAGCCGACGGGCGCCACCT TCACCTTTGAGCGGTCTGCGCGGCAGCAGGGATTCAGCAATTCCTTCAAC AACGTCCGGTACCGCGACATGGGGTTGAGCACCTCCTTGACGCGCTCCAA CGTTCACAAGGAGCTGGATCCCCAATTCTTGTGAAGTTGTGTAACCGCGG CAGCAGCAGCGGTCGTGGGACTGTTGTTGGCGGAGGCAGCGGCGTCGGTG GCGGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1692:817..1773+

>mRNA_P-wetherbeei_contig1692.2.1 ID=mRNA_P-wetherbeei_contig1692.2.1|Name=mRNA_P-wetherbeei_contig1692.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=651bp|location=Sequence derived from alignment at P-wetherbeei_contig1692:817..1773+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCCAAAAGCGTCCACCGCGGGAATCGAAGAACCCTTTTTATGTCAC
GTCGTCGGAACTCAGCACCACCACGACGGAGCGACGATTTAATGCCCCGA
CGGTCTACAAGCCATCGCCACGAAATGACCTCGGCGCCGGGATCGACTGG
AGTTTTATGTACACAAAGGAAAGCGAGCAGTTTGGCATCGGAGTGCCGCA
GAGCGACAGCAAACTCAGCGCCGCGATAGCCTTGCAGAGCTCTTTCGCCG
CCACCGCCAGACGCCGCCACTGCACTCGACGAGAGCCCGGCGCCTGCGCC
AACGATGCGCAACGTGGCGTTGCTGGTGCCGGTGACAGCAGCAGCAGCAG
CAGCGAAAACGGCGGCGGCGGCGGCGAAATGCGGCGGCAGTTGCCCAGCG
ACCAGGCTTCGCTCGACAAGCTCCTGGAGCGCTTCGACCATCGGCCGCGG
CGGGAGAACCCGCTCTACACCACGACCGCCAACGAGATCGGCCTTCGAAA
GCCGACGGGCGCCACCTTCACCTTTGAGCGGTCTGCGCGGCAGCAGGGAT
TCAGCAATTCCTTCAACAACGTCCGGTACCGCGACATGGGGTTGAGCACC
TCCTTGACGCGCTCCAACGTTCACAAGGAGCTGGATCCCCAATTCTTGTG
A
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