mRNA_P-wetherbeei_contig1692.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1692.1.1
Unique NamemRNA_P-wetherbeei_contig1692.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1692.1.1 vs. uniprot
Match: C5KVE2_PERM5 (Cysteinyl-tRNA synthetase, putative (Fragment) n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KVE2_PERM5)

HSP 1 Score: 77.4 bits (189), Expect = 3.800e-17
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 AEKDAKKGLAPQDMFRTQMDKYSRFDDDGVPTHDDKGEPLTKSGMKKLRKDWEKQKKV 174
            AEK+AKK + P+DMF+ Q DKYS+FD+ G+PTHD  GE LTKS  KKL K+WEKQ+++
Sbjct:   41 AEKEAKKKIRPEDMFKGQTDKYSKFDEHGIPTHDAGGEKLTKSAYKKLHKEWEKQRRL 98
[Close]
BLAST of mRNA_P-wetherbeei_contig1692.1.1 vs. uniprot
Match: A0A7J6SG79_PEROL (Glutamine--tRNA ligase n=9 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6SG79_PEROL)

HSP 1 Score: 79.7 bits (195), Expect = 5.130e-16
Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 AEKDAKKGLAPQDMFRTQMDKYSRFDDDGVPTHDDKGEPLTKSGMKKLRKDWEKQKKV 174
            AEK+AKK + PQDMF+ Q DKYS FD++G+PTHD  GE LTKS  KKL K+WEKQ+++
Sbjct:  598 AEKEAKKKIRPQDMFKDQTDKYSHFDENGIPTHDAAGEKLTKSAFKKLHKEWEKQRRL 655
[Close]
BLAST of mRNA_P-wetherbeei_contig1692.1.1 vs. uniprot
Match: A0A7S3HDJ2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HDJ2_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.630e-15
Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 AEKDAKKGLAPQDMFRTQMDKYSRFDDDGVPTHDDKGEPLTKSGMKKLRKDWEKQKKV 174
            A+K A+  +AP++MF++Q D YS FD +G+PTHD  GE ++KSG KKLRKDWEKQKK+
Sbjct:   94 ADKLARMSIAPEEMFKSQTDLYSAFDAEGIPTHDAAGEKISKSGYKKLRKDWEKQKKL 151
[Close]
BLAST of mRNA_P-wetherbeei_contig1692.1.1 vs. uniprot
Match: A0A7S1RS63_ALECA (Glutamine--tRNA ligase n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RS63_ALECA)

HSP 1 Score: 77.8 bits (190), Expect = 2.430e-15
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 AEKDAKKGLAPQDMFRTQMDK-----YSRFDDDGVPTHDDKGEPLTKSGMKKLRKDWEKQKKV 174
            AEK+A+K + P+ MFRTQ D+     YS+FDDDGVPTHD  GEPL K+  KKL+++WEKQKKV
Sbjct:  603 AEKEARKKIDPRQMFRTQTDEQGKPLYSKFDDDGVPTHDQSGEPLNKTRFKKLKQEWEKQKKV 665
[Close]
BLAST of mRNA_P-wetherbeei_contig1692.1.1 vs. uniprot
Match: A0A7J6P5T0_PEROL (Elongation factor Ts, mitochondrial n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6P5T0_PEROL)

HSP 1 Score: 77.8 bits (190), Expect = 2.440e-15
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 AEKDAKKGLAPQDMFRTQMDKYSRFDDDGVPTHDDKGEPLTKSGMKKLRKDWEKQKKV 174
            AEK+AKK + PQDMF+ Q DKYS+FD++G+PTHD  G  LTKS  KKL K+WEKQ+++
Sbjct:  529 AEKEAKKKIRPQDMFKDQSDKYSQFDENGIPTHDAAGAKLTKSAFKKLHKEWEKQRRL 586
[Close]
BLAST of mRNA_P-wetherbeei_contig1692.1.1 vs. uniprot
Match: A0A7J6UGM7_PEROL (Uncharacterized protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6UGM7_PEROL)

HSP 1 Score: 70.9 bits (172), Expect = 4.610e-15
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:   16 KKGLAPQDMFRTQMDKYSRFDDDGVPTHDDKGEPLTKSGMKKLRKDWEKQKKV 174
            KK + PQDMF+ Q DKYS+FD++G+PTHD  G  LTKS  KKL K+WEKQ+++
Sbjct:    1 KKKIRPQDMFKDQSDKYSQFDENGIPTHDAAGAKLTKSAFKKLHKEWEKQRRL 53
[Close]
BLAST of mRNA_P-wetherbeei_contig1692.1.1 vs. uniprot
Match: C5KE56_PERM5 (Glutamine--tRNA ligase n=5 Tax=Perkinsus TaxID=28000 RepID=C5KE56_PERM5)

HSP 1 Score: 76.3 bits (186), Expect = 8.470e-15
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 AEKDAKKGLAPQDMFRTQMDKYSRFDDDGVPTHDDKGEPLTKSGMKKLRKDWEKQKKV 174
            AEK+AKK + P+DMF+ Q DKYS+FD+ G+PTHD  GE L KS  KKL K+WEKQ+++
Sbjct:  597 AEKEAKKKIRPEDMFKEQTDKYSQFDESGIPTHDAAGEKLAKSAYKKLHKEWEKQRRL 654
[Close]
BLAST of mRNA_P-wetherbeei_contig1692.1.1 vs. uniprot
Match: D7FJX2_ECTSI (Glutaminyl-tRNA Synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJX2_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 4.030e-14
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 AEKDAKKGLAPQDMFRTQMDKYSRFDDDGVPTHDDKGEPLTKSGMKKLRKDWEKQKKV 174
            AEK+A+K + PQ+MF +  D YS FDD GVPT D  GEPL+KS +KKL+K+WEKQKK+
Sbjct:  596 AEKEARKRVPPQEMFLSMTDLYSAFDDQGVPTTDKSGEPLSKSAIKKLKKEWEKQKKL 653
[Close]
BLAST of mRNA_P-wetherbeei_contig1692.1.1 vs. uniprot
Match: A0A6H5JZH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH1_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 5.520e-14
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 AEKDAKKGLAPQDMFRTQMDKYSRFDDDGVPTHDDKGEPLTKSGMKKLRKDWEKQKKV 174
            AEK+A+K + PQ+MF +  D YS FDD GVPT D  GEPL+KS +KKL+K+WEKQKK+
Sbjct:  716 AEKEARKRVPPQEMFLSMTDLYSAFDDQGVPTTDKAGEPLSKSSIKKLKKEWEKQKKL 773
[Close]
BLAST of mRNA_P-wetherbeei_contig1692.1.1 vs. uniprot
Match: A0A7S3U5L5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U5L5_9SPIT)

HSP 1 Score: 70.5 bits (171), Expect = 6.850e-14
Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 AEKDAKKGLAPQDMFRTQMDKYSRFDDDGVPTHDDKGEPLTKSGMKKLRKDWEKQKKV 174
            AEK++KK L P+ MF +Q D YS+FD+DGVPT+   GEPL KS +KKL+++W+KQKKV
Sbjct:   93 AEKESKKKLDPKKMFLSQTDLYSKFDEDGVPTNAADGEPLPKSRIKKLKQEWDKQKKV 150
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1692.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
C5KVE2_PERM53.800e-1762.07Cysteinyl-tRNA synthetase, putative (Fragment) n=1... [more]
A0A7J6SG79_PEROL5.130e-1663.79Glutamine--tRNA ligase n=9 Tax=Perkinsus olseni Ta... [more]
A0A7S3HDJ2_9STRA1.630e-1560.34Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1RS63_ALECA2.430e-1561.90Glutamine--tRNA ligase n=1 Tax=Alexandrium catenel... [more]
A0A7J6P5T0_PEROL2.440e-1562.07Elongation factor Ts, mitochondrial n=1 Tax=Perkin... [more]
A0A7J6UGM7_PEROL4.610e-1560.38Uncharacterized protein n=1 Tax=Perkinsus olseni T... [more]
C5KE56_PERM58.470e-1560.34Glutamine--tRNA ligase n=5 Tax=Perkinsus TaxID=280... [more]
D7FJX2_ECTSI4.030e-1462.07Glutaminyl-tRNA Synthetase n=1 Tax=Ectocarpus sili... [more]
A0A6H5JZH1_9PHAE5.520e-1462.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3U5L5_9SPIT6.850e-1460.34Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1692contigP-wetherbeei_contig1692:31..204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJX2
PFAMstRNA-synt_1c,tRNA-synt_1c_C,tRNA-synt_1e,tRNA_synt_1c_R1
Model size174
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01883,ko:K01885,ko:K01886
KEGG ReactionR03650,R03652,R05578
KEGG Pathwayko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120
KEGG ModuleM00121,M00359,M00360
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Exons1
Evalue6.61e-15
EggNOG OGsCOG0008@1|root,COG0215@1|root,KOG1148@2759|Eukaryota,KOG2007@2759|Eukaryota
EC6.1.1.16,6.1.1.17,6.1.1.18
Descriptioncysteinyl-tRNA aminoacylation
Cds size174
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186101.7966993-CDS-P-wetherbeei_contig1692:30..2041683186101.7966993-CDS-P-wetherbeei_contig1692:30..204Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1692 31..204 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1692.1.1prot_P-wetherbeei_contig1692.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1692 31..204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1692.1.1

>prot_P-wetherbeei_contig1692.1.1 ID=prot_P-wetherbeei_contig1692.1.1|Name=mRNA_P-wetherbeei_contig1692.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=58bp
AEKDAKKGLAPQDMFRTQMDKYSRFDDDGVPTHDDKGEPLTKSGMKKLRK
DWEKQKKV
back to top

mRNA from alignment at P-wetherbeei_contig1692:31..204+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1692.1.1 ID=mRNA_P-wetherbeei_contig1692.1.1|Name=mRNA_P-wetherbeei_contig1692.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig1692:31..204+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGAGAAGGACGCGAAGAAGGGGCTGGCGCCGCAGGATATGTTCCGGAC
ACAGATGGACAAGTACAGCCGCTTCGACGACGACGGAGTGCCGACGCATG
ATGACAAGGGCGAGCCGCTCACCAAGAGCGGCATGAAGAAGCTCCGCAAG
GACTGGGAGAAGCAGAAGAAAGTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1692:31..204+

>mRNA_P-wetherbeei_contig1692.1.1 ID=mRNA_P-wetherbeei_contig1692.1.1|Name=mRNA_P-wetherbeei_contig1692.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig1692:31..204+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGAGAAGGACGCGAAGAAGGGGCTGGCGCCGCAGGATATGTTCCGGAC
ACAGATGGACAAGTACAGCCGCTTCGACGACGACGGAGTGCCGACGCATG
ATGACAAGGGCGAGCCGCTCACCAAGAGCGGCATGAAGAAGCTCCGCAAG
GACTGGGAGAAGCAGAAGAAAGTG
back to top