mRNA_P-wetherbeei_contig16897.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16897.1.1
Unique NamemRNA_P-wetherbeei_contig16897.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16897.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16897contigP-wetherbeei_contig16897:204..1442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1042
Hectar predicted targeting categoryother localisation
Exons2
Cds size552
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186101.2626948-UTR-P-wetherbeei_contig16897:203..6931683186101.2626948-UTR-P-wetherbeei_contig16897:203..693Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16897 204..693 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186101.27306-CDS-P-wetherbeei_contig16897:693..7601683186101.27306-CDS-P-wetherbeei_contig16897:693..760Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16897 694..760 +
1683186101.2808769-CDS-P-wetherbeei_contig16897:957..14421683186101.2808769-CDS-P-wetherbeei_contig16897:957..1442Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16897 958..1442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16897.1.1prot_P-wetherbeei_contig16897.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16897 694..1442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16897.1.1

>prot_P-wetherbeei_contig16897.1.1 ID=prot_P-wetherbeei_contig16897.1.1|Name=mRNA_P-wetherbeei_contig16897.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=184bp
MSTLMSTDMITTKSSTRRHAPPGGQTTINLGGGDEPPPPTPRVSPAAPAA
APRRPAFGGAVGVAAVAGCELNASVLSTLSDANAAVTVLEVGDPLLLPFA
AQRLLAGGAAAVVAVGSLTGALARAAAPSLVAALLTAGLDQARPVVIAVS
MEGMGPAEASAAGAKHATEALRLVKLLSGGGASG
back to top

mRNA from alignment at P-wetherbeei_contig16897:204..1442+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16897.1.1 ID=mRNA_P-wetherbeei_contig16897.1.1|Name=mRNA_P-wetherbeei_contig16897.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1239bp|location=Sequence derived from alignment at P-wetherbeei_contig16897:204..1442+ (Phaeothamnion wetherbeei SAG_119_79)
CCCTTTTCGTTTTCCTCGTTGCAGCCCAAACGAAAGGCACGTTGGTACCT
GACCTGCAGCTGGCTCCACACTGGATTGCCAGTCCTCTGGAAAGCGTTTG
AACTGCTGTTTTTCGCCAAACGCTTTCTTGTCTCTTTCGTTGTTGCCCTT
GCCTTCCTCGTGCTGCCAAACGCTTGCGAGTATGGAAAGCAATTTTGCAA
CACATTAGAGCTGATCTGGTTCTCACTTCTCCGCTCGCTTTCTATTGACC
ATGGGAAGTCGGGATGCGGGATTGAACCTTGTAAACCGGTGGGAAGGCCC
TAGTATTTTTCCTTCTTGGTCTATGCAACGTCAATCTGCGACTCTGTGAA
GGCTTTTATCGTATGCAATTCTTTTCTGGACGCTGCGAGCCGAAAACCTG
GGGGGGAATGCTCCATTGTATCTGTTGCGCGCTAAGCCCCGTTCCCTGCA
CACGCTTCCAATTTTTATCATTGCAGCGAGGAGAGGAATAATGTCTACGC
TCATGTCAACCGACATGATCACGACAAAGTCATCCACGCGTCGGCATGCT
CCCCCGGGTGCGACGTGTCACATTCGTCCAACATTACCTCGTTTCCTTTT
GAAACATGAACGCGCGCTTCTTCGGAGCGTCGCTAACAGCCCTTTACTCT
CTTTCGTCGCCTCGCCTGAACGCAGCTCAAACACCCTTTTTTTCCACTGC
CATTCCGTGCACCGGTCGCGCTCCCCGCACTTTCCTGCGGGAGAAATGTT
GCAGGCGGCCAGACGACCATCAACCTCGGCGGAGGTGATGAACCGCCGCC
GCCCACGCCCCGGGTGTCACCCGCGGCACCCGCCGCCGCTCCCCGCCGTC
CGGCCTTCGGCGGCGCCGTCGGCGTCGCTGCCGTCGCTGGCTGCGAGCTC
AATGCCTCCGTCCTGAGCACGCTCTCCGACGCCAACGCCGCAGTGACGGT
CTTGGAGGTCGGCGACCCGCTCCTGCTGCCCTTCGCGGCGCAGCGGCTGC
TGGCGGGCGGCGCCGCCGCTGTCGTCGCCGTTGGGTCGCTCACCGGTGCC
CTGGCGCGGGCCGCGGCGCCGTCGCTGGTGGCGGCACTGCTGACGGCGGG
GCTGGACCAGGCGCGGCCCGTCGTGATCGCCGTGTCGATGGAGGGGATGG
GCCCCGCCGAGGCGAGCGCAGCCGGCGCCAAGCACGCCACGGAGGCGCTC
CGCCTCGTCAAGCTGCTGTCCGGCGGCGGTGCTTCCGGT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig16897:204..1442+

>mRNA_P-wetherbeei_contig16897.1.1 ID=mRNA_P-wetherbeei_contig16897.1.1|Name=mRNA_P-wetherbeei_contig16897.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig16897:204..1442+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTACGCTCATGTCAACCGACATGATCACGACAAAGTCATCCACGCG
TCGGCATGCTCCCCCGGGCGGCCAGACGACCATCAACCTCGGCGGAGGTG
ATGAACCGCCGCCGCCCACGCCCCGGGTGTCACCCGCGGCACCCGCCGCC
GCTCCCCGCCGTCCGGCCTTCGGCGGCGCCGTCGGCGTCGCTGCCGTCGC
TGGCTGCGAGCTCAATGCCTCCGTCCTGAGCACGCTCTCCGACGCCAACG
CCGCAGTGACGGTCTTGGAGGTCGGCGACCCGCTCCTGCTGCCCTTCGCG
GCGCAGCGGCTGCTGGCGGGCGGCGCCGCCGCTGTCGTCGCCGTTGGGTC
GCTCACCGGTGCCCTGGCGCGGGCCGCGGCGCCGTCGCTGGTGGCGGCAC
TGCTGACGGCGGGGCTGGACCAGGCGCGGCCCGTCGTGATCGCCGTGTCG
ATGGAGGGGATGGGCCCCGCCGAGGCGAGCGCAGCCGGCGCCAAGCACGC
CACGGAGGCGCTCCGCCTCGTCAAGCTGCTGTCCGGCGGCGGTGCTTCCG
GT
back to top