mRNA_P-wetherbeei_contig16890.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16890.1.1
Unique NamemRNA_P-wetherbeei_contig16890.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16890.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16890contigP-wetherbeei_contig16890:365..1478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size760
Hectar predicted targeting categoryother localisation
Exons2
Cds size621
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186101.0855138-CDS-P-wetherbeei_contig16890:364..4421683186101.0855138-CDS-P-wetherbeei_contig16890:364..442Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16890 365..442 -
1683186101.0931904-CDS-P-wetherbeei_contig16890:797..13401683186101.0931904-CDS-P-wetherbeei_contig16890:797..1340Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16890 798..1340 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186101.1014707-UTR-P-wetherbeei_contig16890:1340..14781683186101.1014707-UTR-P-wetherbeei_contig16890:1340..1478Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16890 1341..1478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16890.1.1prot_P-wetherbeei_contig16890.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16890 365..1340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16890.1.1

>prot_P-wetherbeei_contig16890.1.1 ID=prot_P-wetherbeei_contig16890.1.1|Name=mRNA_P-wetherbeei_contig16890.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=207bp
MPGRKRPRAGPLRQECVAQSLVAAIVCMAAVLPKGQSFCSSPLVEKPTGR
CVGSCRFSGQPLARSSARYPSSAWMPRGRPGCSTMEADGLVSSSVADSLS
LNGATDAPRKPRGAVLLGGNVAVAELSRATVNRTALRTQLKAMLQQTAGA
SDAALLAQLRAAVAEVQVDVEERHLRALIEQESEAALREARAELEAEGLL
PPSAPAT
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mRNA from alignment at P-wetherbeei_contig16890:365..1478-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16890.1.1 ID=mRNA_P-wetherbeei_contig16890.1.1|Name=mRNA_P-wetherbeei_contig16890.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1114bp|location=Sequence derived from alignment at P-wetherbeei_contig16890:365..1478- (Phaeothamnion wetherbeei SAG_119_79)
CCGTCAGATTATTGCATGCTCCCCGGCCTCCACCAGCCCGGGCCCGCGTT
CGACCAGCAAATCCACGGAGGACGACGACGACGGTACCCCACTTCTAGTT
TTGCAAACGCCAAAATCTCTTAGATACGAGGACGCTGAATGCCTGGCCGG
AAGCGACCACGGGCCGGACCGTTGCGCCAAGAATGCGTAGCACAGAGCCT
TGTGGCTGCCATCGTCTGCATGGCTGCCGTATTGCCTAAAGGACAATCAT
TTTGCTCATCGCCTCTCGTGGAGAAGCCTACGGGTCGTTGCGTCGGATCC
TGCCGCTTTTCTGGGCAGCCGCTTGCGAGGAGCAGTGCGCGTTATCCTTC
AAGCGCATGGATGCCACGCGGCAGGCCAGGATGCTCGACCATGGAGGCTG
ACGGCCTCGTCAGCTCTTCCGTCGCCGATTCACTCTCTCTCAACGGTGCA
ACCGACGCTCCCCGAAAGCCCCGCGGTGCTGTGCTCCTCGGCGGCAATGT
AGCGGTGGCAGAGCTTTCCCGCGCCACTGTCAACCGAACAGCACTGCGAA
CCCAACTCAAGGCGATGCTGCAGCAGACTGCCGGCGCCAGCGACGCAGCG
CTGCTGGCGCAGCTGCGCGCCGCGGTGGCGGAGGTGCAGGTGGACGTGGA
GGAACGCCATCTCCGGGCCCTCATCGAACAGGTGCATATGTCTTTCTTCT
GACTTCTTCCTGATTCGCTTTGGCTTTTGCTGTCAGGGCCACAAACGTGC
CACAACACAGCAGAAAAACGGGGTTGTCTGTTGTTCTATGAATAAATTCA
ATTTACTTCAAACAAAAAAACTTGTGCGTTTGAAATGAGCTTGTAGTTTC
GATGAACCACTGTGGCGCTGAATTGCAAGGATGAGCTCCATGTTTGTCCG
AACACGTCCTGGTGTCCGTTTCGTCGCGCTGCTTTCTAGGGCTGGTTTCC
GAGGAGATTTTACCCGCTACGAGCGAGAAATGGGATGCACGGTTCTCATC
TTCTGCCAGCCGTCACTCCCGTTTGTCGCCCTGCAGGAGTCCGAGGCGGC
TCTCCGAGAGGCCCGTGCCGAGCTTGAAGCGGAGGGCCTCCTGCCGCCAT
CCGCGCCGGCGACA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16890:365..1478-

>mRNA_P-wetherbeei_contig16890.1.1 ID=mRNA_P-wetherbeei_contig16890.1.1|Name=mRNA_P-wetherbeei_contig16890.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=621bp|location=Sequence derived from alignment at P-wetherbeei_contig16890:365..1478- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTGGCCGGAAGCGACCACGGGCCGGACCGTTGCGCCAAGAATGCGT
AGCACAGAGCCTTGTGGCTGCCATCGTCTGCATGGCTGCCGTATTGCCTA
AAGGACAATCATTTTGCTCATCGCCTCTCGTGGAGAAGCCTACGGGTCGT
TGCGTCGGATCCTGCCGCTTTTCTGGGCAGCCGCTTGCGAGGAGCAGTGC
GCGTTATCCTTCAAGCGCATGGATGCCACGCGGCAGGCCAGGATGCTCGA
CCATGGAGGCTGACGGCCTCGTCAGCTCTTCCGTCGCCGATTCACTCTCT
CTCAACGGTGCAACCGACGCTCCCCGAAAGCCCCGCGGTGCTGTGCTCCT
CGGCGGCAATGTAGCGGTGGCAGAGCTTTCCCGCGCCACTGTCAACCGAA
CAGCACTGCGAACCCAACTCAAGGCGATGCTGCAGCAGACTGCCGGCGCC
AGCGACGCAGCGCTGCTGGCGCAGCTGCGCGCCGCGGTGGCGGAGGTGCA
GGTGGACGTGGAGGAACGCCATCTCCGGGCCCTCATCGAACAGGAGTCCG
AGGCGGCTCTCCGAGAGGCCCGTGCCGAGCTTGAAGCGGAGGGCCTCCTG
CCGCCATCCGCGCCGGCGACA
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