mRNA_P-wetherbeei_contig1689.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1689.4.1
Unique NamemRNA_P-wetherbeei_contig1689.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1689.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1689contigP-wetherbeei_contig1689:4881..6671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog81824.XP_001749017.1
Preferred nameCOG6
PFAMsCOG6
Model size1370
Max annot lvl33154|Opisthokonta
KEGG koko:K20293
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0007275,GO:0007548,GO:0008104,GO:0008150,GO:0008152,GO:0008406,GO:0009653,GO:0009887,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0017119,GO:0022414,GO:0030334,GO:0031090,GO:0031984,GO:0032258,GO:0032501,GO:0032502,GO:0032588,GO:0032879,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035262,GO:0040012,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045137,GO:0045184,GO:0046907,GO:0048193,GO:0048513,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051270,GO:0051641,GO:0051649,GO:0061458,GO:0061919,GO:0065007,GO:0070085,GO:0070727,GO:0071702,GO:0071705,GO:0072665,GO:0098588,GO:0098791,GO:0099023,GO:2000145
Exons2
Evalue5.21e-09
EggNOG OGsKOG3758@1|root,KOG3758@2759|Eukaryota,38DBZ@33154|Opisthokonta
Descriptionintra-Golgi vesicle-mediated transport
Cds size936
COG categoryU
BRITEko00000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186101.0346572-UTR-P-wetherbeei_contig1689:4880..52391683186101.0346572-UTR-P-wetherbeei_contig1689:4880..5239Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1689 4881..5239 -
1683186101.063515-UTR-P-wetherbeei_contig1689:6596..66711683186101.063515-UTR-P-wetherbeei_contig1689:6596..6671Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1689 6597..6671 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186101.045162-CDS-P-wetherbeei_contig1689:5239..57221683186101.045162-CDS-P-wetherbeei_contig1689:5239..5722Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1689 5240..5722 -
1683186101.0561182-CDS-P-wetherbeei_contig1689:6143..65961683186101.0561182-CDS-P-wetherbeei_contig1689:6143..6596Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1689 6144..6596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1689.4.1prot_P-wetherbeei_contig1689.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1689 5240..6596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1689.4.1

>prot_P-wetherbeei_contig1689.4.1 ID=prot_P-wetherbeei_contig1689.4.1|Name=mRNA_P-wetherbeei_contig1689.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=312bp
MFDSPLLAGRSKLCTKDGSPLRSVSRDEWYAASVRELRERVVPGMEAAMA
IRGAATYMDLGHHFAAGCLLFEAIAAELGDELCVVRIRRARLEVAYSMTN
SHREKYGDLGIGPCGGKRQDFWVVCRTTDSVLHLSDEQWEALTRFQRWLW
AIDEMEARWVLLRRQFPQLRTTDVRWSDELRPEHLAPVAALLGGAVSPTS
SVVAAAAATEAVAAVAATEVADSGDILEASAASGGIGSGTGPSVTPARAG
SMGINAAGIVGSGGVAIKHHVRHDDPRRNMTALAEADAAYRAIAAYPPEV
LTLIAGRADLR*
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mRNA from alignment at P-wetherbeei_contig1689:4881..6671-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1689.4.1 ID=mRNA_P-wetherbeei_contig1689.4.1|Name=mRNA_P-wetherbeei_contig1689.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1791bp|location=Sequence derived from alignment at P-wetherbeei_contig1689:4881..6671- (Phaeothamnion wetherbeei SAG_119_79)
GAGGGCACGACAACGCTCTCCCACCACAGCAATTACGTGGTGCCCCGCCC
TCCCGTCGTCTTCGAGTTCGAAGAGATGTTCGACTCGCCGCTCCTCGCCG
GCCGCAGCAAGCTCTGCACCAAGGACGGCTCTCCGCTGCGCTCGGTCTCG
CGCGACGAGTGGTACGCCGCCAGCGTGCGCGAACTGCGCGAGCGCGTCGT
CCCCGGGATGGAGGCCGCGATGGCCATCAGGGGAGCCGCCACCTACATGG
ATTTGGGCCACCACTTTGCCGCCGGCTGCCTCCTCTTTGAGGCGATCGCC
GCCGAACTCGGCGACGAATTGTGCGTCGTTCGGATCCGCCGGGCGCGCCT
GGAAGTCGCATACAGCATGACGAACTCACACCGCGAAAAATACGGCGATT
TGGGCATTGGCCCGTGCGGCGGCAAGCGGCAGGACTTCTGGGTTGTCTGC
CGGACGACCGACAGCGTCCTTCATCTGTCCGATGAGCAGTGGGAGGCGCT
CACTCGCTTCCAGCGCTGGCTCTGGGCGGTGAGACGTATGCTGCTGGGAC
TTGTCTGATTGGTCAGCGACTGGGCATTGTATTTTGGAGCGCATTACAAC
ACTTTTGGCCGTTTCCAAGCGTACCAATGTCAAAGCTGTCGTGTTTTCGA
CGTTGAGCCTATTGCTTCGGCAAAAGGAGAGCTGTGTGAGCTCTCAAAAC
CACAGTTTCCTGCCGGAAAGGGCGAACTCGGGGGATCGTTACGCCTTTTG
TTCTCGTTATTCTGGCCTCTTCAGATTTAGTATAGCCCGAAGCTGCTTAA
CCGTTCCTGCTTCCCGCGCGAACTGATGTGCGTGTGCCTCCCTCTGCCGG
CAATCGTAACGAGTCAATTTCGTAAGACAATATCACAAACCGTTTCATCG
CAAACCCGCCGTTTCTCTCCTCCTCTTCCTTCTCCTCCACCCAAACCAGA
TCGACGAGATGGAGGCGCGCTGGGTGCTGCTGCGGCGGCAGTTCCCGCAG
CTGCGGACAACGGACGTACGCTGGTCCGATGAGTTGCGTCCGGAGCATTT
GGCGCCCGTCGCCGCCCTTCTCGGCGGCGCCGTCTCCCCGACGTCTTCGG
TCGTCGCGGCGGCGGCGGCGACGGAGGCGGTGGCGGCGGTGGCGGCGACG
GAGGTTGCAGACAGTGGTGATATTTTGGAGGCGTCGGCGGCGTCAGGAGG
AATCGGCAGCGGCACTGGTCCCAGCGTTACGCCGGCCAGAGCCGGCAGCA
TGGGCATCAATGCCGCCGGCATCGTCGGCAGCGGCGGCGTGGCGATCAAG
CACCACGTGCGGCACGATGACCCGCGACGGAATATGACGGCGCTTGCTGA
GGCAGACGCCGCCTACCGCGCCATCGCCGCCTACCCGCCGGAGGTGCTCA
CCCTCATTGCCGGTCGGGCCGACCTGCGGTGACTGTGACTGAGTGACTGC
CTGGCTGCCTCAGGTCGGGTCGGGTTGACTGCGTCGGTTCGGTCGCTCTG
CGTTTGCAACAGTTAGTCGTAGTACCTAGAAGACTGTGATGTTTGTCGGG
CTGCAGCCAGACAAACAGCTTAATCGCCCTTACAAACAATATAAGATTTG
CCAACTTATTTGCCAACGGTGTGGGTTCGGTGTACTCTGGCGCGGCGGTG
GCTAGCCCAAATTTTGTATCTGGTTGGGAACCGTCAAATATGACTTAAAC
CGTAGACAGATCGGCCGGAATGAAGCGGTGCCCGATCATCAATTCCCCAG
TACCCTCCACTACTGAGGCCAAGAAATAAATAAAATAACCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1689:4881..6671-

>mRNA_P-wetherbeei_contig1689.4.1 ID=mRNA_P-wetherbeei_contig1689.4.1|Name=mRNA_P-wetherbeei_contig1689.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=936bp|location=Sequence derived from alignment at P-wetherbeei_contig1689:4881..6671- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCGACTCGCCGCTCCTCGCCGGCCGCAGCAAGCTCTGCACCAAGGA
CGGCTCTCCGCTGCGCTCGGTCTCGCGCGACGAGTGGTACGCCGCCAGCG
TGCGCGAACTGCGCGAGCGCGTCGTCCCCGGGATGGAGGCCGCGATGGCC
ATCAGGGGAGCCGCCACCTACATGGATTTGGGCCACCACTTTGCCGCCGG
CTGCCTCCTCTTTGAGGCGATCGCCGCCGAACTCGGCGACGAATTGTGCG
TCGTTCGGATCCGCCGGGCGCGCCTGGAAGTCGCATACAGCATGACGAAC
TCACACCGCGAAAAATACGGCGATTTGGGCATTGGCCCGTGCGGCGGCAA
GCGGCAGGACTTCTGGGTTGTCTGCCGGACGACCGACAGCGTCCTTCATC
TGTCCGATGAGCAGTGGGAGGCGCTCACTCGCTTCCAGCGCTGGCTCTGG
GCGATCGACGAGATGGAGGCGCGCTGGGTGCTGCTGCGGCGGCAGTTCCC
GCAGCTGCGGACAACGGACGTACGCTGGTCCGATGAGTTGCGTCCGGAGC
ATTTGGCGCCCGTCGCCGCCCTTCTCGGCGGCGCCGTCTCCCCGACGTCT
TCGGTCGTCGCGGCGGCGGCGGCGACGGAGGCGGTGGCGGCGGTGGCGGC
GACGGAGGTTGCAGACAGTGGTGATATTTTGGAGGCGTCGGCGGCGTCAG
GAGGAATCGGCAGCGGCACTGGTCCCAGCGTTACGCCGGCCAGAGCCGGC
AGCATGGGCATCAATGCCGCCGGCATCGTCGGCAGCGGCGGCGTGGCGAT
CAAGCACCACGTGCGGCACGATGACCCGCGACGGAATATGACGGCGCTTG
CTGAGGCAGACGCCGCCTACCGCGCCATCGCCGCCTACCCGCCGGAGGTG
CTCACCCTCATTGCCGGTCGGGCCGACCTGCGGTGA
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