mRNA_P-wetherbeei_contig16883.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16883.1.1
Unique NamemRNA_P-wetherbeei_contig16883.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16883.1.1 vs. uniprot
Match: A0A835ZAC2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAC2_9STRA)

HSP 1 Score: 358 bits (920), Expect = 2.960e-121
Identity = 187/278 (67.27%), Postives = 219/278 (78.78%), Query Frame = 1
Query:    1 LGMLHEAVVRQRICFPDKRLVQFDAGKLQTLAVMLRDLKRGGHKCLIFTQMSRVLDILEEFLSLHGHSYVRLDGSTGVERRQRLMDRFNSDAKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVTRSTIEENILKKAQQKRHLDFLVMTEGHFTADYMNSSGLKDILGAGPSTGADGXXXXXXXXXXXXXXXXVTAAGSVGAAHSGVAASPEPXXXXVDVEAAMAALEDADDVAAGRAVRKEADEEAREFDE 834
            L +LH +  R R+ FPD+ LVQ+D+GKLQ LA +LR LK GGHKCLIFTQM+R+LD+LE FL++HGH+YVRLDGSTGVERRQRLMDRFN+D +LFCFILSTRSGGLGINLTGADTVIF+DSDWNPAMD+QAQDRAHRIGQTRDVHIYRLVTR+T+EENILKKAQQKRHLD LVMTEG+F ADYM+S GL+D+LG   + G                    TAA    AA  G A +  P     D+  AMA+LEDADDVAAG A+++EAD EA+EFD+
Sbjct:   35 LELLHASGSRMRVAFPDRSLVQYDSGKLQALAPLLRALKSGGHKCLIFTQMTRMLDVLERFLAMHGHTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVHIYRLVTRATVEENILKKAQQKRHLDHLVMTEGNFNADYMSSGGLRDVLGTPAAAGETAE----------------TAAAEGPAAPDGGADAAGPAMSAADIAQAMASLEDADDVAAGAALQREADAEAQEFDD 296          
BLAST of mRNA_P-wetherbeei_contig16883.1.1 vs. uniprot
Match: A0A6H5KKD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD6_9PHAE)

HSP 1 Score: 339 bits (869), Expect = 6.140e-103
Identity = 207/304 (68.09%), Postives = 235/304 (77.30%), Query Frame = 1
Query:    1 LGMLHEAVVRQRICFPDKRLVQFDAGKLQTLAVMLRDLKRGGHKCLIFTQ---MSRVLDILEEFLSLHGHSYVRLDGSTGVERRQRLMDRFNSDAKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVTRSTIEENILKKAQQKRHLDFLVMTEGHFTA---------DYMNSSGLKDILG------------AGPSTG--ADGXXXXXXXXXXXXXXXXVTAAGSVGAAHSGVAASPEPXXXXVDVEAAMAALEDADDVAAGRAVRKEADEEAREFDE 834
            L +++ A +RQRICFPD+RLVQ+DAGKLQ LA +LR  K+GGHKCLIFTQ   MSR+LD+LEEFL+LHGH+YVRLDGSTGVE+RQRLMDRFN D KLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTR+VHIYRLVT S+IEENILKKAQQKRHLDFLVMT G+F+          DY+++ GLKDILG            AG S+G   +GXXXXXXXXXXXXXXXX       GA          P     ++ AAMA+LEDADDV AGRA+ +EA +E  EFDE
Sbjct: 1987 LSLIYPAQIRQRICFPDRRLVQYDAGKLQVLAGLLRSRKQGGHKCLIFTQAMGMSRMLDVLEEFLTLHGHTYVRLDGSTGVEKRQRLMDRFNLDPKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVHIYRLVTSSSIEENILKKAQQKRHLDFLVMTAGNFSGGGEGQEEPMDYLSAGGLKDILGGNTLGVDAAAAGAGSSSGNSGEGXXXXXXXXXXXXXXXXXXXXXXDGA---------PPAMSEKELRAAMASLEDADDVEAGRALEREAADEQLEFDE 2281          
BLAST of mRNA_P-wetherbeei_contig16883.1.1 vs. uniprot
Match: A0A7S3UX30_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX30_HETAK)

HSP 1 Score: 300 bits (768), Expect = 4.250e-100
Identity = 146/191 (76.44%), Postives = 169/191 (88.48%), Query Frame = 1
Query:    1 LGMLHEAVVRQRICFPDKRLVQFDAGKLQTLAVMLRDLKRGGHKCLIFTQMSRVLDILEEFLSLHGHSYVRLDGSTGVERRQRLMDRFNSDAKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVTRSTIEENILKKAQQKRHLDFLVMTEGHFTADYM-NSSGLK 570
            L + + A  R+R+ FPD+RLVQFD+GK Q+LA++LR LK G H+ LIFTQMS++LD+LEEFL+LHGH Y+RLDGSTGVERRQRLMDRFN+D ++FCFILSTRSGGLGINLTGADTV+FYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLV RST+EENIL+KAQQKR LD LVMTEG F+ + M N  GLK
Sbjct:   15 LDLYYPATARRRMQFPDRRLVQFDSGKFQSLAILLRKLKAGKHRVLIFTQMSKMLDVLEEFLTLHGHVYLRLDGSTGVERRQRLMDRFNADTRVFCFILSTRSGGLGINLTGADTVVFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVCRSTVEENILRKAQQKRRLDHLVMTEGQFSVEGMFNQQGLK 205          
BLAST of mRNA_P-wetherbeei_contig16883.1.1 vs. uniprot
Match: D7FTP0_ECTSI (Similar to E1a binding protein P400 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP0_ECTSI)

HSP 1 Score: 330 bits (846), Expect = 7.390e-100
Identity = 189/287 (65.85%), Postives = 215/287 (74.91%), Query Frame = 1
Query:    1 LGMLHEAVVRQRICFPDKRLVQFDAGKLQTLAVMLRDLKRGGHKCLIFTQMSRVLDILEEFLSLHGHSYVRLDGSTGVERRQRLMDRFNSDAKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVTRSTIEENILKKAQQKRHLDFLVMTEGHFTA---------DYMNSSGLKDILGAGPSTGADGXXXXXXXXXXXXXXXXVTAAGSVGAAHSGVAASPEPXXXXVDVEAAMAALEDADDVAAGRAVRKEADEEAREFDE 834
            L +++ A +RQRICFPD+RLVQ+DAGKLQ LA +LR  K+GGHKCLIFTQMSR+LD+LEEFL+LHGH+YVRLDGSTGVE+RQRLMDRFN D KLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTR+VHIYRLVT S+IEENILKKAQQKRHLDFLVMT G+F+          DYM++ GLKDILG G +  AD      XXX         ++ G+ G   +        XXXX             DDV AGRA+ KEA +E  EFDE
Sbjct: 1668 LSLIYPAQIRQRICFPDRRLVQYDAGKLQVLAGLLRSRKQGGHKCLIFTQMSRMLDVLEEFLTLHGHTYVRLDGSTGVEKRQRLMDRFNLDPKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVHIYRLVTSSSIEENILKKAQQKRHLDFLVMTAGNFSGGGEGQENPMDYMSAGGLKDILG-GNTLDADAAAAGAXXX---------SSGGNXGEXTAXXXXXXXXXXXXXXXXXXXXXXXKQDDVEAGRALEKEAADEQLEFDE 1944          
BLAST of mRNA_P-wetherbeei_contig16883.1.1 vs. uniprot
Match: A0A7S2UQV7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQV7_9STRA)

HSP 1 Score: 298 bits (762), Expect = 7.780e-96
Identity = 170/286 (59.44%), Postives = 190/286 (66.43%), Query Frame = 1
Query:   43 FPDKRLVQFDAGKLQTLAVMLRDLKRGGHKCLIFTQMSRVLDILEEFLSLHGHSYVRLDGSTGVERRQRLMDRFNSDAKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVTRSTIEENILKKAQQKRHLDFLVMTEGHF----------------------TADYMNSSGLKDILGAGPSTGADGXXXXXXXXXXXXXXXXVTAAGSVGAAHSGVAASPEPXXXXVDVEAAMAALEDADDVAAGRAVRKEADEEAREFDE 834
            FPDK+LVQFDAGKLQ LA +LR+ KRGGHK LIFTQMS++LDILE FL+L+GH+Y+RLDGSTGVE+RQRLMDRFN+D K+FCFILSTRSGGLGINLTGADTV+FYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVT  +IEENIL KA+QKRHLDFLVM EG F                        D  +  GL DILG       DG                                  E       +E AMA+LED DDV A R  +KEA EE +EFDE
Sbjct:   30 FPDKKLVQFDAGKLQALAELLRERKRGGHKALIFTQMSKMLDILEAFLNLNGHTYLRLDGSTGVEKRQRLMDRFNNDDKVFCFILSTRSGGLGINLTGADTVVFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVTEHSIEENILIKAKQKRHLDFLVMDEGKFHTVEPPSAGKETPNDDTTEEDAAPDLFSKGGLLDILGV--QKDGDGETSKATEERGNSENECT-----------------ETEPSKEQMETAMASLEDEDDVLAMRGAQKEAAEELQEFDE 296          
BLAST of mRNA_P-wetherbeei_contig16883.1.1 vs. uniprot
Match: A0A1W0A053_9STRA (SNF2 family helicase/ATPase and F-box protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A053_9STRA)

HSP 1 Score: 308 bits (790), Expect = 1.780e-94
Identity = 151/202 (74.75%), Postives = 169/202 (83.66%), Query Frame = 1
Query:    1 LGMLHEAVVRQRICFPDKRLVQFDAGKLQTLAVMLRDLKRGGHKCLIFTQMSRVLDILEEFLSLHGHSYVRLDGSTGVERRQRLMDRFNSDAKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVTRSTIEENILKKAQQKRHLDFLVMTEGHFTADYMNSSGLKDILGAGPSTGAD 606
            +  LH  + R  + FPDKRLVQFD GKLQ L  +LRDLKR GH+CLIF+QMS +L+ILE FL+LHGH+Y RLDGST VE+RQRLMDRFNSD K+FCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLV+  T+EENILKKAQQKRHLD LVM EG FT DY + S L+D++  G  T  D
Sbjct:  304 MNQLHPIIQRSHLFFPDKRLVQFDCGKLQQLDRLLRDLKRDGHRCLIFSQMSSMLNILEIFLNLHGHTYFRLDGSTPVEKRQRLMDRFNSDTKVFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVSEHTVEENILKKAQQKRHLDALVMAEGEFTTDYFSKSNLRDLVSFGGETFQD 505          
BLAST of mRNA_P-wetherbeei_contig16883.1.1 vs. uniprot
Match: A0A7S1U7E9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7E9_9STRA)

HSP 1 Score: 286 bits (732), Expect = 1.430e-93
Identity = 143/191 (74.87%), Postives = 171/191 (89.53%), Query Frame = 1
Query:   25 VRQRI--CFPDKRLVQFDAGKLQTLAVMLRDLKRGGHKCLIFTQMSRVLDILEEFLSLHGHSYVRLDGSTGVERRQRLMDRFNSDAKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVTRSTIEENILKKAQQKRHLDFLVMTEGHFTA-DYMNSSGLKDILGAG 588
            V+QR+   FPD++LVQFD GKLQTLA +LR L  GGHKCLIFTQMS++L+ILEEFL+++ ++Y+RLDGSTGVE+RQ+LMDRFNSD KLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTR+VHIYRLV++STIEENIL+KA+QK+ LDFLVMT+G F+A ++     LK +L +G
Sbjct:   25 VQQRLNMYFPDRKLVQFDCGKLQTLARLLRRLYLGGHKCLIFTQMSKMLNILEEFLNIYNYTYLRLDGSTGVEKRQKLMDRFNSDEKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVHIYRLVSQSTIEENILRKAKQKQQLDFLVMTKGDFSASNFYTGDNLKGMLDSG 215          
BLAST of mRNA_P-wetherbeei_contig16883.1.1 vs. uniprot
Match: K3WQJ0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQJ0_GLOUD)

HSP 1 Score: 303 bits (775), Expect = 4.140e-93
Identity = 164/278 (58.99%), Postives = 198/278 (71.22%), Query Frame = 1
Query:    1 LGMLHEAVVRQRICFPDKRLVQFDAGKLQTLAVMLRDLKRGGHKCLIFTQMSRVLDILEEFLSLHGHSYVRLDGSTGVERRQRLMDRFNSDAKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVTRSTIEENILKKAQQKRHLDFLVMTEGHFTADYMNSSGLKDILGAGPSTGADGXXXXXXXXXXXXXXXXVTAAGSVGAAHSGVAASPEPXXXXVDVEAAMAALEDADDVAAGRAVRKEADEEAREFDE 834
            L + +EA  R ++ FPDKRL+Q+D GKLQ L  +LR+LKRG H+CLIFTQMS +L+ILE FL++HGH+Y RLDGST VE+RQ LMDRFN D K+FCFILSTRSGGLGINLTGAD+VIFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLV+  T+EENILKKAQQKRHLDFLVM EG FT D+ + + L++++     TG +                      SVG     V    EP      +E AMA +ED +DV A +  ++E   E REF+E
Sbjct:  530 LSVYYEAFKRTQLFFPDKRLLQYDCGKLQQLDTLLRELKRGNHRCLIFTQMSSMLNILEIFLNIHGHTYFRLDGSTKVEKRQSLMDRFNRDEKIFCFILSTRSGGLGINLTGADSVIFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVSEHTVEENILKKAQQKRHLDFLVMAEGQFTTDFFSKANLRELV-----TGEE-----------------AADTASVGEI---VEDEEEPEMSYEALENAMAQIEDEEDVVAMKGAKEEFISEKREFEE 782          
BLAST of mRNA_P-wetherbeei_contig16883.1.1 vs. uniprot
Match: A0A8K1CF20_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CF20_PYTOL)

HSP 1 Score: 310 bits (793), Expect = 7.230e-93
Identity = 175/278 (62.95%), Postives = 206/278 (74.10%), Query Frame = 1
Query:    1 LGMLHEAVVRQRICFPDKRLVQFDAGKLQTLAVMLRDLKRGGHKCLIFTQMSRVLDILEEFLSLHGHSYVRLDGSTGVERRQRLMDRFNSDAKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVTRSTIEENILKKAQQKRHLDFLVMTEGHFTADYMNSSGLKDILGAGPSTGADGXXXXXXXXXXXXXXXXVTAAGSVGAAHSGVAASPEPXXXXVDVEAAMAALEDADDVAAGRAVRKEADEEAREFDE 834
            + + +EA  R ++ FPDKRL+QFD GKLQ LAV+LR+LKRGGH+CLIFTQMS +L+ILE FL+LHGH+Y RLDG+T VE+RQ LM+RFN D K+FCFILSTRSGGLGINLTGAD VIFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLV+  T+EENILK+AQQKRHLDFLVM EG FT ++ + S L+ ++G       D        XXXXXXXX +T  G                     +EAA+AA+ED +DV A R  R EAD E REFDE
Sbjct:  492 VNVYYEAFKRTQLFFPDKRLLQFDCGKLQQLAVLLRELKRGGHRCLIFTQMSSMLNILEVFLNLHGHTYFRLDGATKVEKRQYLMERFNHDDKVFCFILSTRSGGLGINLTGADCVIFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVSAHTVEENILKRAQQKRHLDFLVMHEGQFTTEFFSKSSLRALVGEMEGAQED---PVDEQXXXXXXXXALTVDG---------------------IEAALAAVEDEEDVVAMRGARAEADSEQREFDE 745          
BLAST of mRNA_P-wetherbeei_contig16883.1.1 vs. uniprot
Match: A0A7S4NI31_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NI31_9STRA)

HSP 1 Score: 307 bits (787), Expect = 2.630e-92
Identity = 172/284 (60.56%), Postives = 196/284 (69.01%), Query Frame = 1
Query:   43 FPDKRLVQFDAGKLQTLAVMLRDLKRGGHKCLIFTQMSRVLDILEEFLSLHGHSYVRLDGSTGVERRQRLMDRFNSDAKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVTRSTIEENILKKAQQKRHLDFLVMTEGHFTA------------------DYMNSSGLKDILGAG--PSTGADGXXXXXXXXXXXXXXXXVTAAGSVGAAHSGVAASPEPXXXXVDVEAAMAALEDADDVAAGRAVRKEADEEAREFDE 834
            FPDK+LVQFDAGKLQ +AV++ DLKRGGH+ LIFTQMS++LDILE FL+LHGH+Y+RLDG TGVE+RQRLMDRFN+D K+FCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVT  +IEENIL KA+QKRHLDFLVM EG F A                  D +   GL+DILG    PS   D                           H    +  E       +E AMA+LED DDV A +  +KEA+EE +EFDE
Sbjct:  657 FPDKKLVQFDAGKLQAMAVLMNDLKRGGHRALIFTQMSKMLDILEAFLNLHGHTYLRLDGGTGVEKRQRLMDRFNNDTKVFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVTEHSIEENILIKAKQKRHLDFLVMDEGKFHAAPEAGSISVKEESEAEEPDLLTKGGLRDILGVSGEPSEHVDRPK------------------------HECGNSEGEEKLSKEQIENAMASLEDEDDVKAMQGAQKEAEEELQEFDE 916          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16883.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAC2_9STRA2.960e-12167.27P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6H5KKD6_9PHAE6.140e-10368.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3UX30_HETAK4.250e-10076.44Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D7FTP0_ECTSI7.390e-10065.85Similar to E1a binding protein P400 (Partial) (Fra... [more]
A0A7S2UQV7_9STRA7.780e-9659.44Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A1W0A053_9STRA1.780e-9474.75SNF2 family helicase/ATPase and F-box protein (Fra... [more]
A0A7S1U7E9_9STRA1.430e-9374.87Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
K3WQJ0_GLOUD4.140e-9358.99Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1CF20_PYTOL7.230e-9362.95Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S4NI31_9STRA2.630e-9260.56Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16883contigP-wetherbeei_contig16883:191..1325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FTP0
PFAMsBeta_helix,HSA,Helicase_C,Myb_DNA-bind_6,Myb_DNA-binding,SNF2_N
Model size834
Max annot lvl2759|Eukaryota
KEGG koko:K11320
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.27e-100
EggNOG OGsCOG0553@1|root,KOG0391@2759|Eukaryota
Descriptionhelicase activity
Cds size828
COG categoryKL
BRITEko00000,ko01000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186100.8973227-UTR-P-wetherbeei_contig16883:190..1961683186100.8973227-UTR-P-wetherbeei_contig16883:190..196Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16883 191..196 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186100.9061668-CDS-P-wetherbeei_contig16883:196..6581683186100.9061668-CDS-P-wetherbeei_contig16883:196..658Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16883 197..658 +
1683186100.9180207-CDS-P-wetherbeei_contig16883:959..13251683186100.9180207-CDS-P-wetherbeei_contig16883:959..1325Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16883 960..1325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16883.1.1prot_P-wetherbeei_contig16883.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16883 197..1325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16883.1.1

>prot_P-wetherbeei_contig16883.1.1 ID=prot_P-wetherbeei_contig16883.1.1|Name=mRNA_P-wetherbeei_contig16883.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=276bp
MLHEAVVRQRICFPDKRLVQFDAGKLQTLAVMLRDLKRGGHKCLIFTQMS
RVLDILEEFLSLHGHSYVRLDGSTGVERRQRLMDRFNSDAKLFCFILSTR
SGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTRDVHIYRLVTR
STIEENILKKAQQKRHLDFLVMTEGHFTADYMNSSGLKDILGAGPSTGAD
GGGDGGSAADTAAAAAAVTAAGSVGAAHSGVAASPEPGAAPVDVEAAMAA
LEDADDVAAGRAVRKEADEEAREFDE
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mRNA from alignment at P-wetherbeei_contig16883:191..1325+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16883.1.1 ID=mRNA_P-wetherbeei_contig16883.1.1|Name=mRNA_P-wetherbeei_contig16883.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1135bp|location=Sequence derived from alignment at P-wetherbeei_contig16883:191..1325+ (Phaeothamnion wetherbeei SAG_119_79)
TTGGGCATGCTGCACGAGGCGGTGGTGCGGCAGCGCATCTGTTTCCCGGA CAAGCGCCTGGTGCAGTTCGACGCCGGCAAGCTTCAGACGCTGGCGGTCA TGCTCCGGGATCTGAAGCGCGGCGGCCACAAGTGCCTCATATTCACGCAG ATGAGCCGGGTGCTGGACATCCTTGAGGAGTTCCTGAGCCTGCACGGGCA CTCGTACGTGCGCCTCGATGGGTCGACAGGCGTGGAGCGACGGCAGCGGC TGATGGACCGCTTCAACAGCGACGCCAAGCTCTTCTGCTTCATTCTGTCG ACGCGCAGCGGCGGCCTCGGCATCAACCTGACGGGCGCTGACACGGTCAT CTTCTACGACTCGGACTGGAACCCCGCCATGGACGCCCAGGCGCAGGACC GCGCCCACCGCATCGGCCAGACGCGCGACGTGCACATCTACCGCCTAGTC ACGCGCAGCACCATCGAGGTCAGTCTTGTCGGCTCCGTCGATTATTGGGT TGTGGAGGAGGGAGGATTTTGGTTCCGTTCTCTTCAAGAGTGGTGATGCT GCGATGCATTTCAGCTTGGCAGGAGCGGCGACTGCTGCCTTTCTGCCTGC TGCTTTCTAGGGAAGAGCACAAGTCCTCGCGTCGGCGTTTCTATGTTGCG GTTAGCAGCACTGCTGGAATGTATGGTTCACAATGAAGGTCAAGTTGAAC TTAACTCTATGACTATGACCCGCTCTCGTCCTTGGTCCACTTTCGCGTCG CTTCTCGCCGGAACTGCAGGAAAATATCCTCAAGAAGGCGCAGCAGAAGC GGCACCTCGACTTCCTCGTCATGACCGAGGGCCACTTCACTGCTGACTAC ATGAACTCGAGCGGTCTCAAGGACATCCTCGGTGCCGGCCCAAGCACCGG CGCTGACGGCGGTGGAGACGGCGGCAGCGCGGCAGATACTGCTGCGGCGG CGGCGGCGGTGACGGCAGCCGGCTCTGTGGGGGCGGCGCACAGCGGGGTG GCGGCGTCGCCGGAGCCGGGGGCGGCGCCGGTCGACGTGGAGGCGGCGAT GGCGGCGCTGGAGGACGCGGACGATGTGGCGGCAGGACGGGCGGTCCGCA AGGAGGCGGACGAGGAGGCGCGCGAGTTCGACGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16883:191..1325+

>mRNA_P-wetherbeei_contig16883.1.1 ID=mRNA_P-wetherbeei_contig16883.1.1|Name=mRNA_P-wetherbeei_contig16883.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=828bp|location=Sequence derived from alignment at P-wetherbeei_contig16883:191..1325+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCACGAGGCGGTGGTGCGGCAGCGCATCTGTTTCCCGGACAAGCG
CCTGGTGCAGTTCGACGCCGGCAAGCTTCAGACGCTGGCGGTCATGCTCC
GGGATCTGAAGCGCGGCGGCCACAAGTGCCTCATATTCACGCAGATGAGC
CGGGTGCTGGACATCCTTGAGGAGTTCCTGAGCCTGCACGGGCACTCGTA
CGTGCGCCTCGATGGGTCGACAGGCGTGGAGCGACGGCAGCGGCTGATGG
ACCGCTTCAACAGCGACGCCAAGCTCTTCTGCTTCATTCTGTCGACGCGC
AGCGGCGGCCTCGGCATCAACCTGACGGGCGCTGACACGGTCATCTTCTA
CGACTCGGACTGGAACCCCGCCATGGACGCCCAGGCGCAGGACCGCGCCC
ACCGCATCGGCCAGACGCGCGACGTGCACATCTACCGCCTAGTCACGCGC
AGCACCATCGAGGAAAATATCCTCAAGAAGGCGCAGCAGAAGCGGCACCT
CGACTTCCTCGTCATGACCGAGGGCCACTTCACTGCTGACTACATGAACT
CGAGCGGTCTCAAGGACATCCTCGGTGCCGGCCCAAGCACCGGCGCTGAC
GGCGGTGGAGACGGCGGCAGCGCGGCAGATACTGCTGCGGCGGCGGCGGC
GGTGACGGCAGCCGGCTCTGTGGGGGCGGCGCACAGCGGGGTGGCGGCGT
CGCCGGAGCCGGGGGCGGCGCCGGTCGACGTGGAGGCGGCGATGGCGGCG
CTGGAGGACGCGGACGATGTGGCGGCAGGACGGGCGGTCCGCAAGGAGGC
GGACGAGGAGGCGCGCGAGTTCGACGAG
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