mRNA_P-wetherbeei_contig16873.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16873.1.1
Unique NamemRNA_P-wetherbeei_contig16873.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16873.1.1 vs. uniprot
Match: D7G687_ECTSI (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G687_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 9.380e-27
Identity = 57/85 (67.06%), Postives = 71/85 (83.53%), Query Frame = 1 
Query:    1 RGMASGKEFVVNVPTMGDSITEGTVVQWLKATGDAVAQDEVVVVLETDKVSIDVRAPEAGKILECLAGEGDTVAVGAPLIKLDTS 255
            R ++SG E V+ VP+MGDSI+EGT+V+W K  GD+V  DEVVVVLETDKVSIDVRAP AG ++E +A +GDTV VGAPL+KLDT+
Sbjct:   68 RHLSSGSEEVIPVPSMGDSISEGTIVEWAKQPGDSVELDEVVVVLETDKVSIDVRAPSAGTLVEQMAADGDTVEVGAPLMKLDTA 152
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BLAST of mRNA_P-wetherbeei_contig16873.1.1 vs. uniprot
Match: A0A6H5KK69_9PHAE (Dihydrolipoyllysine-residue succinyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK69_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 8.350e-26
Identity = 57/85 (67.06%), Postives = 70/85 (82.35%), Query Frame = 1 
Query:    1 RGMASGKEFVVNVPTMGDSITEGTVVQWLKATGDAVAQDEVVVVLETDKVSIDVRAPEAGKILECLAGEGDTVAVGAPLIKLDTS 255
            R ++SG E V+ VP+MGDSI+EGT+V+W K  GD+V  DEVVVVLETDKVSIDVRAP AG ++E +A +GD V VGAPL+KLDTS
Sbjct:   68 RHLSSGGEEVIPVPSMGDSISEGTIVEWAKQPGDSVELDEVVVVLETDKVSIDVRAPSAGTLVEQMAADGDIVEVGAPLMKLDTS 152
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BLAST of mRNA_P-wetherbeei_contig16873.1.1 vs. uniprot
Match: W7TJE0_9STRA (Dihydrolipoyllysine-residue succinyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJE0_9STRA)

HSP 1 Score: 107 bits (268), Expect = 8.140e-25
Identity = 55/90 (61.11%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:   10 ASGKEFVVNVPTMGDSITEGTVVQWLKATGDAVAQDEVVVVLETDKVSIDVRAPEAGKILECLAGEGDTVAVGAPLIKLDTSAAPGGGAA 279
            ++G++F++NVP+MGDSITEGT+V W K  GD V  D+V+VVLETDKVS+DVRAP +G I E +  E DTV VG PL K+DT+AA   GAA
Sbjct:   78 SAGQDFILNVPSMGDSITEGTIVNWQKKVGDWVDADDVIVVLETDKVSVDVRAPRSGIITEVIGAEDDTVGVGVPLAKIDTTAAKPEGAA 167
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BLAST of mRNA_P-wetherbeei_contig16873.1.1 vs. uniprot
Match: A0A6A4Y0C2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4Y0C2_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.380e-23
Identity = 59/99 (59.60%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:    7 MASGKEFVVNVPTMGDSITEGTVVQWLKATGDAVAQDEVVVVLETDKVSIDVRAPEAGKILECLAGEGDTVAVGAPLIKLDTSAAPGGGAAPAAAAPAP 303
            +A G    VNVP+MGDSI+EGTVV W K  GD V  DEVV+V+ETDKVS+DVRAP+AG I E L    D VA+GAPL  +   AAP G AA  AA  AP
Sbjct:  157 VAGGDPVTVNVPSMGDSISEGTVVSWTKGPGDHVDADEVVLVIETDKVSVDVRAPQAGVIKEGLVQVDDVVAIGAPLFTIIPGAAPAGKAAAPAAVAAP 255
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BLAST of mRNA_P-wetherbeei_contig16873.1.1 vs. uniprot
Match: A0A7S4DDN4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDN4_HETAK)

HSP 1 Score: 99.8 bits (247), Expect = 1.480e-23
Identity = 53/72 (73.61%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:   31 VNVPTMGDSITEGTVVQWLKATGDAVAQDEVVVVLETDKVSIDVRAPEAGKILECLAGEGDTVAVGAPLIKL 246
            V VP+MGDSITEGTV++WLKA GDAVA+DEVVVV+ETDKVS+DVRAP AG   E LAG   TV VGAPL  L
Sbjct:  102 VPVPSMGDSITEGTVIEWLKAPGDAVAEDEVVVVIETDKVSVDVRAPAAGVFGEALAGVDQTVEVGAPLFTL 173
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BLAST of mRNA_P-wetherbeei_contig16873.1.1 vs. uniprot
Match: A0A7S2XVM6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVM6_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.930e-23
Identity = 54/93 (58.06%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:   10 ASGKEFVVNVPTMGDSITEGTVVQWLKATGDAVAQDEVVVVLETDKVSIDVRAPEAGKILECLAGEGDTVAVGAPLIKLDTSAAPGGGAAPAA 288
            ++G   V+N P+MGDSI+EGT++ W+K  GD  A D+VVVV+ETDKVS+DVRAPE G I+  LA   D VAVGAPL ++D  A P   AAPAA
Sbjct:   49 SAGPTKVINTPSMGDSISEGTLISWVKQVGDYAAADDVVVVIETDKVSVDVRAPEGGMIVAQLANTDDVVAVGAPLFEIDPQA-PAPDAAPAA 140
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BLAST of mRNA_P-wetherbeei_contig16873.1.1 vs. uniprot
Match: A0A8K1CEW7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEW7_PYTOL)

HSP 1 Score: 103 bits (256), Expect = 5.540e-23
Identity = 60/102 (58.82%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:   16 GKEFVVNVPTMGDSITEGTVVQWLKATGDAVAQDEVVVVLETDKVSIDVRAPEAGKILECLAGEGDTVAVGAPLIKLDTSAAPGGGAAPAA--AAPAPARTA 315
            G    V+VP+MGDSI+EGT+V WLK+ GD V  D+VVVV+ETDKVS+DVRAP++G I E LA   + VA+GAPL KL   AAP   A PA   AAP PA+ A
Sbjct:  177 GDAETVDVPSMGDSISEGTIVSWLKSAGDHVTADDVVVVIETDKVSVDVRAPKSGIIQEVLAKVDEVVAIGAPLFKLVPGAAPASSATPAVPVAAPTPAKAA 278
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BLAST of mRNA_P-wetherbeei_contig16873.1.1 vs. uniprot
Match: A0A2D4C0D3_PYTIN (Dihydrolipoyllysine-residue succinyltransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0D3_PYTIN)

HSP 1 Score: 102 bits (255), Expect = 7.700e-23
Identity = 62/99 (62.63%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:   10 ASGKEFVVNVPTMGDSITEGTVVQWLKATGDAVAQDEVVVVLETDKVSIDVRAPEAGKILECLAGEGDTVAVGAPLIKLDTSAAPGGGAAPAAAAPAPA 306
            ++G+   V VP+MGDSI+EGTVV+WLKA GDAVA D+VVVVLETDKVS+DVRAP AG++ + LA   D V VGAPL ++      G GAAPAA A APA
Sbjct:   65 SAGEAVDVPVPSMGDSISEGTVVEWLKAPGDAVAADDVVVVLETDKVSVDVRAPFAGQLAKQLAAIDDNVLVGAPLFQIIK----GDGAAPAAPAAAPA 159
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BLAST of mRNA_P-wetherbeei_contig16873.1.1 vs. uniprot
Match: A0A484DXU8_BRELC (Lipoyl-binding domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DXU8_BRELC)

HSP 1 Score: 95.9 bits (237), Expect = 6.950e-22
Identity = 48/78 (61.54%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:   13 SGKEFVVNVPTMGDSITEGTVVQWLKATGDAVAQDEVVVVLETDKVSIDVRAPEAGKILECLAGEGDTVAVGAPLIKL 246
            +G+E  V VPTMGDSI+EGTVV+W+K  GD+VA+D+VVVVLETDKVS+DVRAP++G I   LA    TV +G PL  +
Sbjct:  110 TGEEVTVPVPTMGDSISEGTVVEWVKKIGDSVAEDDVVVVLETDKVSVDVRAPKSGTITSILADVDQTVEIGVPLFSI 187
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BLAST of mRNA_P-wetherbeei_contig16873.1.1 vs. uniprot
Match: A0A7S2XVR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVR3_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 9.790e-22
Identity = 51/79 (64.56%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:   10 ASGKEFVVNVPTMGDSITEGTVVQWLKATGDAVAQDEVVVVLETDKVSIDVRAPEAGKILECLAGEGDTVAVGAPLIKL 246
            ASG E V  VP+MGDSITEGTV++W+K  GD+VA D+VVV++ETDKVS+DVR+P AG + E LA E +TV VGAPL  L
Sbjct:   30 ASGGELVT-VPSMGDSITEGTVIEWVKKPGDSVAADDVVVIIETDKVSVDVRSPSAGVMGEALATEEETVQVGAPLFTL 107
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16873.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G687_ECTSI9.380e-2767.06Dihydrolipoamide acetyltransferase component of py... [more]
A0A6H5KK69_9PHAE8.350e-2667.06Dihydrolipoyllysine-residue succinyltransferase n=... [more]
W7TJE0_9STRA8.140e-2561.11Dihydrolipoyllysine-residue succinyltransferase n=... [more]
A0A6A4Y0C2_9STRA1.380e-2359.60Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A7S4DDN4_HETAK1.480e-2373.61Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2XVM6_9STRA2.930e-2358.06Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A8K1CEW7_PYTOL5.540e-2358.82Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C0D3_PYTIN7.700e-2362.63Dihydrolipoyllysine-residue succinyltransferase n=... [more]
A0A484DXU8_BRELC6.950e-2261.54Lipoyl-binding domain-containing protein n=1 Tax=B... [more]
A0A7S2XVR3_9STRA9.790e-2264.56Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16873contigP-wetherbeei_contig16873:3..416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G687
PFAMs2-oxoacid_dh,Biotin_lipoyl
Model size414
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC02727,RC02833
KEGG koko:K00658
KEGG ReactionR02570,R02571,R08549
KEGG Pathwayko00020,ko00310,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011,M00032
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.86e-27
EggNOG OGsCOG0508@1|root,KOG0559@2759|Eukaryota
EC2.3.1.61
Descriptiondihydrolipoyllysine-residue succinyltransferase activity
Cds size408
COG categoryC
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186100.588776-CDS-P-wetherbeei_contig16873:2..4101683186100.588776-CDS-P-wetherbeei_contig16873:2..410Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16873 3..410 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186100.6044135-UTR-P-wetherbeei_contig16873:410..4161683186100.6044135-UTR-P-wetherbeei_contig16873:410..416Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16873 411..416 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16873.1.1prot_P-wetherbeei_contig16873.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16873 3..410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16873.1.1

>prot_P-wetherbeei_contig16873.1.1 ID=prot_P-wetherbeei_contig16873.1.1|Name=mRNA_P-wetherbeei_contig16873.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
MASGKEFVVNVPTMGDSITEGTVVQWLKATGDAVAQDEVVVVLETDKVSI
DVRAPEAGKILECLAGEGDTVAVGAPLIKLDTSAAPGGGAAPAAAAPAPA
RTAPQASTPAPAAAPASTPMAAPAPAPAKAPTPAKA
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mRNA from alignment at P-wetherbeei_contig16873:3..416-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16873.1.1 ID=mRNA_P-wetherbeei_contig16873.1.1|Name=mRNA_P-wetherbeei_contig16873.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig16873:3..416- (Phaeothamnion wetherbeei SAG_119_79)
CGAGGCATGGCGTCGGGCAAAGAGTTCGTCGTCAACGTGCCGACAATGGG
CGACTCCATCACCGAGGGTACGGTAGTGCAGTGGCTAAAGGCGACCGGGG
ACGCCGTAGCGCAGGATGAGGTGGTGGTAGTGCTCGAGACCGACAAGGTC
AGCATCGATGTCCGTGCGCCCGAAGCGGGAAAGATTCTTGAATGCCTCGC
CGGAGAGGGGGACACTGTCGCCGTCGGCGCCCCGCTCATCAAGCTCGACA
CCTCGGCGGCGCCCGGCGGCGGCGCGGCACCTGCCGCTGCGGCCCCGGCC
CCGGCGCGCACAGCACCCCAGGCTTCCACTCCCGCTCCGGCCGCTGCGCC
GGCGTCGACACCAATGGCGGCGCCGGCGCCGGCGCCAGCCAAGGCGCCAA
CTCCCGCTAAGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16873:3..416-

>mRNA_P-wetherbeei_contig16873.1.1 ID=mRNA_P-wetherbeei_contig16873.1.1|Name=mRNA_P-wetherbeei_contig16873.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig16873:3..416- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTCGGGCAAAGAGTTCGTCGTCAACGTGCCGACAATGGGCGACTC
CATCACCGAGGGTACGGTAGTGCAGTGGCTAAAGGCGACCGGGGACGCCG
TAGCGCAGGATGAGGTGGTGGTAGTGCTCGAGACCGACAAGGTCAGCATC
GATGTCCGTGCGCCCGAAGCGGGAAAGATTCTTGAATGCCTCGCCGGAGA
GGGGGACACTGTCGCCGTCGGCGCCCCGCTCATCAAGCTCGACACCTCGG
CGGCGCCCGGCGGCGGCGCGGCACCTGCCGCTGCGGCCCCGGCCCCGGCG
CGCACAGCACCCCAGGCTTCCACTCCCGCTCCGGCCGCTGCGCCGGCGTC
GACACCAATGGCGGCGCCGGCGCCGGCGCCAGCCAAGGCGCCAACTCCCG
CTAAGGCG
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