mRNA_P-wetherbeei_contig1687.8.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1687.8.1
Unique NamemRNA_P-wetherbeei_contig1687.8.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1687.8.1 vs. uniprot
Match: A0A352KFG1_9PROT (2-deoxy-D-gluconate 3-dehydrogenase n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A352KFG1_9PROT)

HSP 1 Score: 401 bits (1030), Expect = 1.550e-139
Identity = 203/256 (79.30%), Postives = 223/256 (87.11%), Query Frame = 1
Query:    1 MAYSGFDLTGKVALVTGGNGGIGLXXXXXXAQAGANIVIWGTNTEKNEAARAKLAACGVKVLASKVNVAEEQQVIDAFGDAVKQMGRVDTVIANAGIGFGAASFMELKTENFRKVMAVNVEGAFFTLREAARHMVTRDGGGSIIGIASLAAVEGAARNQAYGASKGALISMIKGIAVELARYGVRANAILPGWIATDMTEAAQGSQKFNENVIGRVPIRRWGQPEDFAGVAVYLASDASKYHTGDQFVIDGGYAIF 768
            MAY GFDL+GK ALVTGGNGGIGL      AQAGANIVIWGTN EKNEAAR +L+A GVK L SKV+V++E QVIDAFG+AV+QMGR+DTVIANAGIGFGA SFMELK + FRKVM VN+EGAFFT REAARHM  R+GGGS++G+ASLAAVEGAARNQAYGASKG LISM+KGIAVELARYG+RAN ILPGWIAT+MT  AQ S+KFN+NVIGRVPIRRWGQPEDF GVAVYLASDAS YH GD  VIDGGY  F
Sbjct:    1 MAYRGFDLSGKTALVTGGNGGIGLGMAEAMAQAGANIVIWGTNAEKNEAARGRLSAIGVKTLTSKVDVSQENQVIDAFGEAVRQMGRIDTVIANAGIGFGAPSFMELKLDTFRKVMGVNLEGAFFTFREAARHMTGREGGGSLVGVASLAAVEGAARNQAYGASKGGLISMVKGIAVELARYGIRANTILPGWIATEMTGDAQASKKFNDNVIGRVPIRRWGQPEDFGGVAVYLASDASAYHNGDTLVIDGGYLAF 256          
BLAST of mRNA_P-wetherbeei_contig1687.8.1 vs. uniprot
Match: A7HR54_PARL1 (Short-chain dehydrogenase/reductase SDR n=8 Tax=Alphaproteobacteria TaxID=28211 RepID=A7HR54_PARL1)

HSP 1 Score: 338 bits (868), Expect = 8.050e-115
Identity = 174/260 (66.92%), Postives = 206/260 (79.23%), Query Frame = 1
Query:    1 MAYSGFDLTGKVALVTGGNGGIGLXXXXXXAQAGANIVIWGTNTEKNEAARAKLAACGVKVLASKVNVAEEQQVIDAFGDAVKQMGRVDTVIANAGIGFGAASFMELKTENFRKVMAVNVEGAFFTLREAARHMVTR----DGGGSIIGIASLAAVEGAARNQAYGASKGALISMIKGIAVELARYGVRANAILPGWIATDMTEAAQGSQKFNENVIGRVPIRRWGQPEDFAGVAVYLASDASKYHTGDQFVIDGGYAIF 768
            M+Y  FDL+GKVALVTGGNGGIGL      AQ+GA+I IWGTN +KN+ A  +L A GVKV   KV+V++E QV+D  G  VK++GR+D+V ANAG+GFGA SF+ + TE +RK +AVN++G FFTLREAARHMV R    D GGS++GIASLAA+EGAARN+AY A+KG +ISMIK IAVE ARYG+RANAILPGWIATDMT  AQ +  F E VI RVP RRWG+P DF GVAVYL SDAS YH+GD FVIDGGYAIF
Sbjct:    1 MSYKPFDLSGKVALVTGGNGGIGLGMADAIAQSGADIAIWGTNEDKNKRAAEQLRAHGVKVYTRKVDVSDEAQVVDGIGATVKELGRIDSVFANAGVGFGAPSFIGMTTETYRKTLAVNLDGVFFTLREAARHMVDRAKAGDAGGSLVGIASLAAIEGAARNEAYAATKGGVISMIKSIAVEHARYGMRANAILPGWIATDMTAQAQAAPAFAEKVIPRVPARRWGEPGDFGGVAVYLTSDASSYHSGDTFVIDGGYAIF 260          
BLAST of mRNA_P-wetherbeei_contig1687.8.1 vs. uniprot
Match: A0A2D7ZNE1_9CAUL (2-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Phenylobacterium sp. TaxID=1871053 RepID=A0A2D7ZNE1_9CAUL)

HSP 1 Score: 334 bits (857), Expect = 3.660e-113
Identity = 172/259 (66.41%), Postives = 202/259 (77.99%), Query Frame = 1
Query:    1 MAYSGFDLTGKVALVTGGNGGIGLXXXXXXAQAGANIVIWGTNTEKNEAARAKLAACGVKVLASKVNVAEEQQVIDAFGDAVKQMGRVDTVIANAGIGFGAASFMELKTENFRKVMAVNVEGAFFTLREAARHMVTRDG---GGSIIGIASLAAVEGAARNQAYGASKGALISMIKGIAVELARYGVRANAILPGWIATDMTEAAQGSQKFNENVIGRVPIRRWGQPEDFAGVAVYLASDASKYHTGDQFVIDGGYAIF 768
            MAY  FDLTGKVALVTGGNGGIG       AQAGA+IVIWG+N +KN AA  KL   GV+VL   VNVA+E  V D    AV QMG V TV+ANAGIG GA SF E  TE +RKV++VN++G FFT REA +HMV R G   GGS++ I+SL+A++GAARNQAY A+KGALI M++ IAVE ARYGVRAN ILPGW+ATDMT AAQ + KFNENVI RVP+RRWG+P DF G+AVYLASDAS++HTGD F+IDGGY +F
Sbjct:    1 MAYKPFDLTGKVALVTGGNGGIGFGMVEAMAQAGADIVIWGSNPDKNRAAEEKLKPTGVRVLTQVVNVADETAVADGMEAAVAQMGAVHTVVANAGIGGGAKSFSEFPTETYRKVLSVNLDGVFFTFREACKHMVARGGDGQGGSLVAISSLSALDGAARNQAYAATKGALIPMVRAIAVEHARYGVRANVILPGWVATDMTAAAQDNDKFNENVIKRVPMRRWGEPADFGGMAVYLASDASRFHTGDSFLIDGGYGVF 259          
BLAST of mRNA_P-wetherbeei_contig1687.8.1 vs. uniprot
Match: A0A257J1B0_9PROT (2-deoxy-D-gluconate 3-dehydrogenase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A257J1B0_9PROT)

HSP 1 Score: 334 bits (857), Expect = 3.920e-113
Identity = 174/261 (66.67%), Postives = 204/261 (78.16%), Query Frame = 1
Query:    1 MAYSGFDLTGKVALVTGGNGGIGLXXXXXXAQAGANIVIWGTNTEKNEAARAKLAACGVKVLASKVNVAEEQQVIDAFGDAVKQMGRVDTVIANAGIGFGAASFMELKTENFRKVMAVNVEGAFFTLREAARHMVTRDG-----GGSIIGIASLAAVEGAARNQAYGASKGALISMIKGIAVELARYGVRANAILPGWIATDMTEAAQGSQKFNENVIGRVPIRRWGQPEDFAGVAVYLASDASKYHTGDQFVIDGGYAIF 768
            MAY  FDLTGKVALVTGGNGGIG       AQAGA++VIWG+N  KN  A  KL A GV+VL   VNVA+E+ V     +AV +MGRVDTVIANAGIG GA SF E  TE +R+VM+VN++G FFT REA +HMV R G     GGS++ I+SL+A++GA RN+AY A+KGA+ISMI+ IAVE ARYGVRANAILPGWIATDMT  AQG+ KFN+NVI RVP+RRWGQP DF G+AVYLASDAS +HTGD F+IDGGY IF
Sbjct:    1 MAYKPFDLTGKVALVTGGNGGIGFGMAEAMAQAGADVVIWGSNPTKNADAEEKLKATGVRVLTQVVNVADEEAVRAGMVEAVNKMGRVDTVIANAGIGGGAPSFSEFSTEQYRRVMSVNLDGVFFTFREACKHMVARAGEGDRAGGSLVVISSLSALDGAPRNEAYAATKGAVISMIRAIAVEHARYGVRANAILPGWIATDMTAGAQGNDKFNDNVIKRVPVRRWGQPADFGGMAVYLASDASSFHTGDSFLIDGGYGIF 261          
BLAST of mRNA_P-wetherbeei_contig1687.8.1 vs. uniprot
Match: B0T042_CAUSK (Short-chain dehydrogenase/reductase SDR n=11 Tax=Bacteria TaxID=2 RepID=B0T042_CAUSK)

HSP 1 Score: 334 bits (856), Expect = 5.370e-113
Identity = 172/260 (66.15%), Postives = 206/260 (79.23%), Query Frame = 1
Query:    1 MAYSGFDLTGKVALVTGGNGGIGLXXXXXXAQAGANIVIWGTNTEKNEAARAKLAACGVKVLASKVNVAEEQQVIDAFGDAVKQMGRVDTVIANAGIGFGAASFMELKTENFRKVMAVNVEGAFFTLREAARHMVTR----DGGGSIIGIASLAAVEGAARNQAYGASKGALISMIKGIAVELARYGVRANAILPGWIATDMTEAAQGSQKFNENVIGRVPIRRWGQPEDFAGVAVYLASDASKYHTGDQFVIDGGYAIF 768
            MAY  FDLTG+VAL+TGGN GIGL      AQAGA+IVIWG+N E+N+AA  +L   GV+V A  V+V++E QV +   +AV  MGRVD+V ANAG+G+GA SF+E+KTE +RK +AVN++G FFT REA RHMV R    D GGSI+G+ASLAA+EGAARNQAY A+KGA+ISM+K +AVE ARYGVRANAILPGWIATDMT+ AQ +  F E VI RVP RRWGQP DF G+AVYLASDAS YH+GD FVIDG Y+IF
Sbjct:    1 MAYQPFDLTGRVALITGGNRGIGLGMAAALAQAGADIVIWGSNGERNQAAEVELLKHGVRVKAQVVDVSQEDQVREGMEEAVAAMGRVDSVFANAGVGYGAPSFVEMKTETYRKTLAVNLDGVFFTFREACRHMVERAKAGDPGGSIVGVASLAAIEGAARNQAYAATKGAVISMMKSVAVEHARYGVRANAILPGWIATDMTQGAQDNPAFAEKVIPRVPARRWGQPADFGGIAVYLASDASSYHSGDTFVIDGAYSIF 260          
BLAST of mRNA_P-wetherbeei_contig1687.8.1 vs. uniprot
Match: A0A8H9XJ55_9CAUL (SDR family oxidoreductase n=1 Tax=Phenylobacterium sp. TaxID=1871053 RepID=A0A8H9XJ55_9CAUL)

HSP 1 Score: 333 bits (853), Expect = 1.480e-112
Identity = 173/259 (66.80%), Postives = 204/259 (78.76%), Query Frame = 1
Query:    1 MAYSGFDLTGKVALVTGGNGGIGLXXXXXXAQAGANIVIWGTNTEKNEAARAKLAACGVKVLASKVNVAEEQQVIDAFGDAVKQMGRVDTVIANAGIGFGAASFMELKTENFRKVMAVNVEGAFFTLREAARHMVTRDG---GGSIIGIASLAAVEGAARNQAYGASKGALISMIKGIAVELARYGVRANAILPGWIATDMTEAAQGSQKFNENVIGRVPIRRWGQPEDFAGVAVYLASDASKYHTGDQFVIDGGYAIF 768
            MAY  FDLTGKVALVTGGNGGIGL      AQAGA++VIWG+N +KN  A A+L A G +VLA  VNVA+E  V     +AV +MG V TV+ANAGIG GA SF E  TE +RKV++VN++G FFTLREAA+HMV R G   GGS+I  +SL+A++GAARNQAY A+KGALI MI+ IAVE ARYG+RAN ILPGWIATDMT  AQ + KFNENVI RVP+RRWG+PEDF G+AVY ASDAS++HTGD  +IDGGYAIF
Sbjct:    1 MAYKPFDLTGKVALVTGGNGGIGLGMADAMAQAGADVVIWGSNPDKNARAEAQLKAHGTRVLAQVVNVADEAAVAAGMAEAVAKMGAVHTVVANAGIGGGAKSFAEFPTETYRKVLSVNLDGVFFTLREAAKHMVERAGDGQGGSLIATSSLSALDGAARNQAYAATKGALIPMIRAIAVEHARYGIRANVILPGWIATDMTAGAQDNDKFNENVIKRVPMRRWGEPEDFGGIAVYFASDASRFHTGDSVLIDGGYAIF 259          
BLAST of mRNA_P-wetherbeei_contig1687.8.1 vs. uniprot
Match: D5VHH4_CAUST (Short-chain dehydrogenase/reductase SDR n=18 Tax=Caulobacter TaxID=75 RepID=D5VHH4_CAUST)

HSP 1 Score: 332 bits (851), Expect = 3.090e-112
Identity = 173/260 (66.54%), Postives = 209/260 (80.38%), Query Frame = 1
Query:    1 MAYSGFDLTGKVALVTGGNGGIGLXXXXXXAQAGANIVIWGTNTEKNEAARAKLAACGVKVLASKVNVAEEQQVIDAFGDAVKQMGRVDTVIANAGIGFGAASFMELKTENFRKVMAVNVEGAFFTLREAARHMVTR----DGGGSIIGIASLAAVEGAARNQAYGASKGALISMIKGIAVELARYGVRANAILPGWIATDMTEAAQGSQKFNENVIGRVPIRRWGQPEDFAGVAVYLASDASKYHTGDQFVIDGGYAIF 768
            MAY+ F+L+GKVALVTGGN GIGL      AQAGA+IVIWG+N E+N AA  +L + GV+V A  V+V++E QV +   +AV  MGRVD+V ANAGIG+G+ SF+E+KTE +RKV++VN++G FFTLREA RHMV R    D GGS++GIASLAA+EGAARN+AY A+KGA+ISMIK +AVE ARYGVRANAILPGWIATDMT  AQG+  F E VI RVP RRWG+PEDF G+AVYLASDAS YH+G   VIDGGY+IF
Sbjct:    1 MAYAPFNLSGKVALVTGGNRGIGLGMAKAMAQAGADIVIWGSNPERNLAAEQQLTSLGVRVKAQTVDVSDEVQVAEGMEEAVAAMGRVDSVFANAGIGYGSPSFVEMKTEVYRKVLSVNLDGVFFTLREACRHMVERAKAGDPGGSLVGIASLAAIEGAARNEAYAATKGAVISMIKSVAVEHARYGVRANAILPGWIATDMTAGAQGNSAFAEKVIPRVPARRWGEPEDFGGMAVYLASDASSYHSGTTIVIDGGYSIF 260          
BLAST of mRNA_P-wetherbeei_contig1687.8.1 vs. uniprot
Match: A0A3B9YVV8_9PROT (2-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3B9YVV8_9PROT)

HSP 1 Score: 331 bits (849), Expect = 6.230e-112
Identity = 174/259 (67.18%), Postives = 201/259 (77.61%), Query Frame = 1
Query:    7 YSGFDLTGKVALVTGGNGGIGLXXXXXXAQAGANIVIWGTNTEKNEAARAKLAACGVKVLASKVNVAEEQQVIDAFGDAVKQMGRVDTVIANAGIGFGAASFMELKTENFRKVMAVNVEGAFFTLREAARHMVTRD-----GGGSIIGIASLAAVEGAARNQAYGASKGALISMIKGIAVELARYGVRANAILPGWIATDMTEAAQGSQKFNENVIGRVPIRRWGQPEDFAGVAVYLASDASKYHTGDQFVIDGGYAIF 768
            Y  FDLTGKVAL+TGGNGGIGL      AQAGA I IWGTN EKN  + A+L A G  V A  VNVA+E  V+ A  + V +MGRVD  IANAGIG  AASF+++  E +RKV+AVN +G FFTLREAARHMV R       GGS++G+ASLAA+EGAARNQ Y A+KGA+ISMIKGIAVE ARYGVRANAILPGWIATDMT  AQ S  F + VI R+P RRWG+P+DF+G+AVYLASDAS+YH+GD FVIDGGYAIF
Sbjct:    2 YKPFDLTGKVALITGGNGGIGLGMAHGLAQAGAGIAIWGTNPEKNAQSLAQLKAHGRPVSARVVNVADEAAVVRAMEETVAEMGRVDCCIANAGIGSAAASFLDITAEKYRKVLAVNEDGVFFTLREAARHMVERGKRGDTAGGSLVGVASLAAIEGAARNQHYAATKGAVISMIKGIAVEFARYGVRANAILPGWIATDMTAGAQASPAFTDKVIPRIPARRWGEPDDFSGIAVYLASDASRYHSGDTFVIDGGYAIF 260          
BLAST of mRNA_P-wetherbeei_contig1687.8.1 vs. uniprot
Match: A0A328AY72_9CAUL (2-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Phenylobacterium hankyongense TaxID=1813876 RepID=A0A328AY72_9CAUL)

HSP 1 Score: 331 bits (848), Expect = 8.850e-112
Identity = 169/260 (65.00%), Postives = 207/260 (79.62%), Query Frame = 1
Query:    1 MAYSGFDLTGKVALVTGGNGGIGLXXXXXXAQAGANIVIWGTNTEKNEAARAKLAACGVKVLASKVNVAEEQQVIDAFGDAVKQMGRVDTVIANAGIGFGAASFMELKTENFRKVMAVNVEGAFFTLREAARHMVTR----DGGGSIIGIASLAAVEGAARNQAYGASKGALISMIKGIAVELARYGVRANAILPGWIATDMTEAAQGSQKFNENVIGRVPIRRWGQPEDFAGVAVYLASDASKYHTGDQFVIDGGYAIF 768
            MAY  FDLTGKVALVTGGNGGIGL      AQAGA++VIWGTN  KN AA ++L A G +VL  KV+VA+EQ VI+A   AV +MGR+DTVIANAG+G GA SF E+ TE +R+VM+VN++G FFT REA RHMV R    D GGS++  +S +A+ GAARN+AYGA+K A++SM++ IAVE ARYGVRAN++LPGWIATDMT+ AQ + KFN+ VI RVP RRWG+PEDF G+AVYLASDAS++HTGD  V+DGGY IF
Sbjct:    1 MAYKPFDLTGKVALVTGGNGGIGLGMADALAQAGADLVIWGTNEAKNAAAESQLKAHGRRVLTRKVDVADEQAVIEAMRAAVAEMGRLDTVIANAGVGGGARSFSEMSTEVYRRVMSVNLDGVFFTFREACRHMVERAEAGDTGGSLVVTSSTSAIHGAARNEAYGATKAAVLSMVRAIAVEHARYGVRANSVLPGWIATDMTDGAQHNDKFNDQVIKRVPFRRWGEPEDFGGLAVYLASDASRFHTGDSLVVDGGYTIF 260          
BLAST of mRNA_P-wetherbeei_contig1687.8.1 vs. uniprot
Match: A0A0P0NVR6_9CAUL (2-deoxy-D-gluconate 3-dehydrogenase n=5 Tax=Caulobacter TaxID=75 RepID=A0A0P0NVR6_9CAUL)

HSP 1 Score: 330 bits (846), Expect = 1.780e-111
Identity = 168/260 (64.62%), Postives = 208/260 (80.00%), Query Frame = 1
Query:    1 MAYSGFDLTGKVALVTGGNGGIGLXXXXXXAQAGANIVIWGTNTEKNEAARAKLAACGVKVLASKVNVAEEQQVIDAFGDAVKQMGRVDTVIANAGIGFGAASFMELKTENFRKVMAVNVEGAFFTLREAARHMVTR----DGGGSIIGIASLAAVEGAARNQAYGASKGALISMIKGIAVELARYGVRANAILPGWIATDMTEAAQGSQKFNENVIGRVPIRRWGQPEDFAGVAVYLASDASKYHTGDQFVIDGGYAIF 768
            MAY+ F+L GKVALVTGGN GIGL      AQ+GA+IVIWG+N E+N+AA  +L   GV+V A  V+V++E QV +A  +AV  MGR+D+V ANAG+GFG+ SF++++TE +RK++AVN++G FFTLREA RHMV R    D GGS++G+ASLAA+EGAARN+AY A+KGA+ISMIK +AVE ARYGVRANAILPGWIATDMT  AQ +  F E VI RVP RRWG+P DF G+AVYLASDAS YH+GD  VIDGGY+IF
Sbjct:    1 MAYAPFNLAGKVALVTGGNRGIGLGMATALAQSGADIVIWGSNAERNQAAEGELLKHGVRVKAQTVDVSDESQVAEAMVEAVTAMGRIDSVFANAGVGFGSPSFVDMQTETYRKILAVNLDGVFFTLREACRHMVDRAKSGDPGGSLVGVASLAAIEGAARNEAYAATKGAVISMIKSVAVEHARYGVRANAILPGWIATDMTAGAQSAPAFAEKVIPRVPARRWGEPADFGGMAVYLASDASSYHSGDTLVIDGGYSIF 260          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1687.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A352KFG1_9PROT1.550e-13979.302-deoxy-D-gluconate 3-dehydrogenase n=2 Tax=Alphap... [more]
A7HR54_PARL18.050e-11566.92Short-chain dehydrogenase/reductase SDR n=8 Tax=Al... [more]
A0A2D7ZNE1_9CAUL3.660e-11366.412-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Phenyl... [more]
A0A257J1B0_9PROT3.920e-11366.672-deoxy-D-gluconate 3-dehydrogenase n=3 Tax=Alphap... [more]
B0T042_CAUSK5.370e-11366.15Short-chain dehydrogenase/reductase SDR n=11 Tax=B... [more]
A0A8H9XJ55_9CAUL1.480e-11266.80SDR family oxidoreductase n=1 Tax=Phenylobacterium... [more]
D5VHH4_CAUST3.090e-11266.54Short-chain dehydrogenase/reductase SDR n=18 Tax=C... [more]
A0A3B9YVV8_9PROT6.230e-11267.182-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Alphap... [more]
A0A328AY72_9CAUL8.850e-11265.002-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Phenyl... [more]
A0A0P0NVR6_9CAUL1.780e-11164.622-deoxy-D-gluconate 3-dehydrogenase n=5 Tax=Caulob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1687contigP-wetherbeei_contig1687:5334..6104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog402881.Plav_0764
Preferred nameMA20_16385
PFAMsadh_short_C2
Model size771
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K00046
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.32e-115
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,1MWGK@1224|Proteobacteria,2TVQ8@28211|Alphaproteobacteria
EC1.1.1.69
DescriptionCOG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Cds size771
COG categoryIQ
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186100.5419567-CDS-P-wetherbeei_contig1687:5333..61041683186100.5419567-CDS-P-wetherbeei_contig1687:5333..6104Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1687 5334..6104 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1687.8.1prot_P-wetherbeei_contig1687.8.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1687 5334..6104 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1687.8.1

>prot_P-wetherbeei_contig1687.8.1 ID=prot_P-wetherbeei_contig1687.8.1|Name=mRNA_P-wetherbeei_contig1687.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=257bp
MAYSGFDLTGKVALVTGGNGGIGLGMAQAMAQAGANIVIWGTNTEKNEAA
RAKLAACGVKVLASKVNVAEEQQVIDAFGDAVKQMGRVDTVIANAGIGFG
AASFMELKTENFRKVMAVNVEGAFFTLREAARHMVTRDGGGSIIGIASLA
AVEGAARNQAYGASKGALISMIKGIAVELARYGVRANAILPGWIATDMTE
AAQGSQKFNENVIGRVPIRRWGQPEDFAGVAVYLASDASKYHTGDQFVID
GGYAIF*
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mRNA from alignment at P-wetherbeei_contig1687:5334..6104+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1687.8.1 ID=mRNA_P-wetherbeei_contig1687.8.1|Name=mRNA_P-wetherbeei_contig1687.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=771bp|location=Sequence derived from alignment at P-wetherbeei_contig1687:5334..6104+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTTATTCAGGATTTGATCTGACCGGCAAGGTTGCGCTGGTGACGGG CGGCAATGGCGGCATCGGACTGGGCATGGCGCAGGCGATGGCGCAAGCGG GCGCCAATATCGTTATATGGGGCACCAATACCGAAAAGAATGAAGCGGCC CGCGCCAAACTGGCGGCATGCGGGGTGAAGGTTCTGGCAAGCAAAGTCAA TGTCGCAGAAGAACAGCAGGTCATTGATGCATTCGGCGACGCCGTAAAAC AGATGGGCCGGGTGGACACCGTAATCGCCAATGCCGGCATCGGCTTTGGC GCGGCGTCCTTCATGGAACTGAAGACGGAAAATTTTCGCAAGGTAATGGC GGTAAATGTTGAAGGCGCGTTCTTCACCCTGCGCGAAGCCGCCCGGCACA TGGTCACCCGCGACGGCGGCGGATCGATTATTGGCATTGCCAGCCTTGCC GCCGTCGAAGGGGCGGCGCGCAATCAGGCCTATGGCGCCAGCAAGGGGGC GCTGATTTCCATGATCAAGGGCATTGCGGTGGAACTGGCCCGTTATGGGG TGCGGGCCAATGCAATCCTGCCGGGCTGGATAGCCACCGACATGACCGAA GCGGCGCAGGGGTCACAGAAATTCAACGAGAATGTCATCGGCCGGGTGCC CATTCGGCGCTGGGGACAACCGGAAGATTTTGCTGGCGTAGCGGTTTATC TGGCCAGCGACGCCTCAAAATACCATACCGGCGACCAGTTTGTCATAGAT GGCGGTTACGCCATTTTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1687:5334..6104+

>mRNA_P-wetherbeei_contig1687.8.1 ID=mRNA_P-wetherbeei_contig1687.8.1|Name=mRNA_P-wetherbeei_contig1687.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=771bp|location=Sequence derived from alignment at P-wetherbeei_contig1687:5334..6104+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTTATTCAGGATTTGATCTGACCGGCAAGGTTGCGCTGGTGACGGG
CGGCAATGGCGGCATCGGACTGGGCATGGCGCAGGCGATGGCGCAAGCGG
GCGCCAATATCGTTATATGGGGCACCAATACCGAAAAGAATGAAGCGGCC
CGCGCCAAACTGGCGGCATGCGGGGTGAAGGTTCTGGCAAGCAAAGTCAA
TGTCGCAGAAGAACAGCAGGTCATTGATGCATTCGGCGACGCCGTAAAAC
AGATGGGCCGGGTGGACACCGTAATCGCCAATGCCGGCATCGGCTTTGGC
GCGGCGTCCTTCATGGAACTGAAGACGGAAAATTTTCGCAAGGTAATGGC
GGTAAATGTTGAAGGCGCGTTCTTCACCCTGCGCGAAGCCGCCCGGCACA
TGGTCACCCGCGACGGCGGCGGATCGATTATTGGCATTGCCAGCCTTGCC
GCCGTCGAAGGGGCGGCGCGCAATCAGGCCTATGGCGCCAGCAAGGGGGC
GCTGATTTCCATGATCAAGGGCATTGCGGTGGAACTGGCCCGTTATGGGG
TGCGGGCCAATGCAATCCTGCCGGGCTGGATAGCCACCGACATGACCGAA
GCGGCGCAGGGGTCACAGAAATTCAACGAGAATGTCATCGGCCGGGTGCC
CATTCGGCGCTGGGGACAACCGGAAGATTTTGCTGGCGTAGCGGTTTATC
TGGCCAGCGACGCCTCAAAATACCATACCGGCGACCAGTTTGTCATAGAT
GGCGGTTACGCCATTTTCTGA
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