mRNA_P-wetherbeei_contig1687.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1687.5.1
Unique NamemRNA_P-wetherbeei_contig1687.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1687.5.1 vs. uniprot
Match: A0A3C0TV20_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TV20_9PROT)

HSP 1 Score: 208 bits (530), Expect = 2.340e-66
Identity = 96/143 (67.13%), Postives = 114/143 (79.72%), Query Frame = 1
Query:   43 GPGAAQATLQSKAEAGSNIVTLTQTACQFLESEGGVNHGYKTKRAADCREVNKKTGEQRSRAATPLTLKPGKYIFRVTNKDVPYELGFWLRGAGLARLIQPNVSGGGLTQGLTRDYSVELTTGTYAYSCPLNPTPDYPLVVKE 471
            G   AQ+  Q   +    ++ LTQT CQF+E+EGG +HGY T + +DC E+N +TGE+R + A PLTLKPGKYIFRVTNK+VPYELGFWLRG GLAR +QPNVSGGGL QG+TRDY+VELT G Y YSCPLNPTPDYPL+VKE
Sbjct:   31 GEAGAQSVSQGAGKQEGTVIDLTQTGCQFVEAEGGTDHGYTTTQKSDCVEINSQTGEKRLQTAEPLTLKPGKYIFRVTNKNVPYELGFWLRGVGLARFVQPNVSGGGLKQGVTRDYAVELTPGEYLYSCPLNPTPDYPLIVKE 173          
BLAST of mRNA_P-wetherbeei_contig1687.5.1 vs. uniprot
Match: A0A351T6H5_9PROT (Uncharacterized protein n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T6H5_9PROT)

HSP 1 Score: 184 bits (467), Expect = 6.880e-57
Identity = 83/130 (63.85%), Postives = 104/130 (80.00%), Query Frame = 1
Query:   79 AEAGSNIVTLTQTACQFLESEGGVNHGYKTKRAADCREVNKKTGEQRSRAATPLTLKPGKYIFRVTNKDVPYELGFWLRGAGLARLIQPNVSGGGLTQGLTRDYSVELTTGTYAYSCPLNPTPDYPLVVK 468
            A+    I+ LTQT CQF+ESEGGV+HG++T  AADC  +N+++G +R   A PL L+PGKYIFRVTNK+VPYELGFWLRG G +R+  P+ SGGGLT+G+TRDY +ELT G Y YSCPLNPTPDY L+V+
Sbjct:   35 AQQAPRIIELTQTGCQFIESEGGVDHGFQTASAADCAAINEQSGAERVADAAPLRLEPGKYIFRVTNKNVPYELGFWLRGQGFSRVTLPSTSGGGLTEGVTRDYEIELTAGEYLYSCPLNPTPDYHLIVE 164          
BLAST of mRNA_P-wetherbeei_contig1687.5.1 vs. uniprot
Match: A0A522VJ53_9PROT (Uncharacterized protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A522VJ53_9PROT)

HSP 1 Score: 177 bits (448), Expect = 3.190e-54
Identity = 85/131 (64.89%), Postives = 102/131 (77.86%), Query Frame = 1
Query:   79 AEAGSNIVTLTQTACQFLESEGGVNHGYKTKRAADCREVNKKTGEQRSRAATPLTLKPGKYIFRVTNKDVPYELGFWLRGAGLA-RLIQPNVSGGGLTQGLTRDYSVELTTGTYAYSCPLNPTPDYPLVVK 468
            A AG  +V+LTQT CQFLESEGG + G+K+ + ADC  +N +TG+QR   +  L LKPGKYIFRVTN+DVPYELGFWLRGA L  R + P+VSGGGLT G T+DY++EL  G Y YSCPLNPTPDY LVV+
Sbjct:   19 AAAGPQVVSLTQTPCQFLESEGGRDRGFKSAKGADCEAINARTGKQRLAESKTLELKPGKYIFRVTNRDVPYELGFWLRGASLKDRALLPSVSGGGLTTGKTQDYAIELKPGNYVYSCPLNPTPDYRLVVR 149          
BLAST of mRNA_P-wetherbeei_contig1687.5.1 vs. uniprot
Match: W4L570_9BACT (Uncharacterized protein n=2 Tax=Candidatus Entotheonella TaxID=93171 RepID=W4L570_9BACT)

HSP 1 Score: 175 bits (444), Expect = 1.380e-53
Identity = 81/130 (62.31%), Postives = 104/130 (80.00%), Query Frame = 1
Query:   79 AEAGSNIVTLTQTACQFLESEGGVNHGYKTKRAADCREVNKKTGEQRSRAATPLTLKPGKYIFRVTNKDVPYELGFWLRGAGLARLIQPNVSGGGLTQGLTRDYSVELTTGTYAYSCPLNPTPDYPLVVK 468
            A A   ++ LTQT CQF+E EG V+H +KT ++ DC+ +N++ G++R  A+TPL LKPGKYIFRVTN++VPYELGF+LRG+GL RL  P VSGGGLT G T+DY ++L  G+Y YSCPLNPTPDYP+VVK
Sbjct:   22 AAAAPTVINLTQTGCQFVEPEG-VDHQFKTGKSDDCKAINQQNGDKRLNASTPLELKPGKYIFRVTNQNVPYELGFYLRGSGLGRLTLPKVSGGGLTTGKTQDYHIDLKAGSYVYSCPLNPTPDYPIVVK 150          
BLAST of mRNA_P-wetherbeei_contig1687.5.1 vs. uniprot
Match: A0A3N1Y2H6_9GAMM (Uncharacterized protein n=1 Tax=Inmirania thermothiophila TaxID=1750597 RepID=A0A3N1Y2H6_9GAMM)

HSP 1 Score: 174 bits (441), Expect = 3.470e-53
Identity = 78/125 (62.40%), Postives = 96/125 (76.80%), Query Frame = 1
Query:   97 IVTLTQTACQFLESEGGVNHGYKTKRAADCREVNKKTGEQRSRAATPLTLKPGKYIFRVTNKDVPYELGFWLRGAGLARLIQPNVSGGGLTQGLTRDYSVELTTGTYAYSCPLNPTPDYPLVVKE 471
            ++ LTQT CQFLE EG  +HG+ T+ A DCR +N +TG +R   A PL LKPG+Y+FRV N+DVPYELGFWLRG G+ RL  P+VSGGG+  G +RDY V+L  G Y YSCPLNPTPDYPL+V+E
Sbjct:   24 VIVLTQTGCQFLEPEG-TDHGFVTRSADDCRAINARTGAERVAKAKPLVLKPGRYVFRVVNRDVPYELGFWLRGRGIGRLTLPSVSGGGIAPGTSRDYEVDLRPGEYLYSCPLNPTPDYPLIVRE 147          
BLAST of mRNA_P-wetherbeei_contig1687.5.1 vs. uniprot
Match: A0A3M1FYX3_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1FYX3_9PROT)

HSP 1 Score: 174 bits (441), Expect = 4.200e-53
Identity = 85/141 (60.28%), Postives = 105/141 (74.47%), Query Frame = 1
Query:   49 GAAQATLQSKAEAGSNIVTLTQTACQFLESEGGVNHGYKTKRAADCREVNKKTGEQRSRAATPLTLKPGKYIFRVTNKDVPYELGFWLRGAGL-ARLIQPNVSGGGLTQGLTRDYSVELTTGTYAYSCPLNPTPDYPLVVK 468
            GA  +  Q+ A     ++TLTQTACQF+ESE GV+HG+ +    DC  +N++TG +R   A  LTLKPGKY+FRVTN++VPYELGFWLRG GL +R   P+VSGGGL  G T+DY++EL  GTY YSCPLNPTPDY LVVK
Sbjct:   12 GAIFSQAQAMAADEVTVITLTQTACQFVESENGVDHGFTSTGKKDCEAINERTGAERLANAKTLTLKPGKYVFRVTNRNVPYELGFWLRGEGLFSRATLPSVSGGGLKTGATKDYAIELVEGTYLYSCPLNPTPDYRLVVK 152          
BLAST of mRNA_P-wetherbeei_contig1687.5.1 vs. uniprot
Match: A0A1A9F2Y0_9GAMM (Uncharacterized protein n=2 Tax=Marinobacterium TaxID=48075 RepID=A0A1A9F2Y0_9GAMM)

HSP 1 Score: 174 bits (441), Expect = 4.920e-53
Identity = 89/152 (58.55%), Postives = 105/152 (69.08%), Query Frame = 1
Query:   16 AGFIGATLIGPGAAQATLQSKAEAGSNIVTLTQTACQFLESEGGVNHGYKTKRAADCREVNKKTGEQRSRAATPLTLKPGKYIFRVTNKDVPYELGFWLRGAGLA-RLIQPNVSGGGLTQGLTRDYSVELTTGTYAYSCPLNPTPDYPLVVK 468
            AG  G  L  P AAQA           ++ LTQT CQFLESE GV+HGY T+  ADC  +N ++GE+R   A  L LKPG+YIFRV+N++VPYELGFWLRGA L  R + P+VSGGGL  G TRDY +EL  G Y YSCPLNPTPDY L+VK
Sbjct:   13 AGLFGLALALPFAAQAEEPQ-------VINLTQTGCQFLESENGVDHGYSTRSMADCEAINAQSGEERLAGAKTLELKPGRYIFRVSNENVPYELGFWLRGATLVDRALLPSVSGGGLALGTTRDYEIELKPGEYVYSCPLNPTPDYSLIVK 157          
BLAST of mRNA_P-wetherbeei_contig1687.5.1 vs. uniprot
Match: UPI0013583646 (hypothetical protein n=1 Tax=Cognatazoarcus halotolerans TaxID=2686016 RepID=UPI0013583646)

HSP 1 Score: 173 bits (439), Expect = 7.690e-53
Identity = 82/125 (65.60%), Postives = 96/125 (76.80%), Query Frame = 1
Query:   97 IVTLTQTACQFLESEGGVNHGYKTKRAADCREVNKKTGEQRSRAATPLTLKPGKYIFRVTNKDVPYELGFWLRGAGLA-RLIQPNVSGGGLTQGLTRDYSVELTTGTYAYSCPLNPTPDYPLVVK 468
            ++TL Q  CQFLESEG VNHGY+ K AADC  +NK +GE+R   A  L L  GKY+FRVTN+DVPYELGFWLRGA LA R + P+VSGGGLT G+T+DY + L  G Y YSCPLNPTPDY LVV+
Sbjct:   26 VITLNQVGCQFLESEGDVNHGYRPKSAADCERINKASGEKRVGEAKVLELPAGKYVFRVTNRDVPYELGFWLRGASLAGRALLPSVSGGGLTTGVTQDYEIALKPGEYVYSCPLNPTPDYKLVVR 150          
BLAST of mRNA_P-wetherbeei_contig1687.5.1 vs. uniprot
Match: A0A661BKI9_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661BKI9_9GAMM)

HSP 1 Score: 172 bits (436), Expect = 3.020e-52
Identity = 82/125 (65.60%), Postives = 97/125 (77.60%), Query Frame = 1
Query:   97 IVTLTQTACQFLESEGGVNHGYKTKRAADCREVNKKTGEQRSRAATPLTLKPGKYIFRVTNKDVPYELGFWLRGAGLA-RLIQPNVSGGGLTQGLTRDYSVELTTGTYAYSCPLNPTPDYPLVVK 468
            +V LTQ  CQFLESEGG++HGY + R ADC  +N +TG QR  AA P+ LKPG+YIFRVTN+ VPYELGFWLRG GL  R I P+VSGGGL +G T++Y++EL  G Y YSCPLN TPDY LVVK
Sbjct:   35 VVELTQLPCQFLESEGGMDHGYTSNRRADCETINTQTGGQRVSAAKPMELKPGRYIFRVTNRSVPYELGFWLRGEGLVGRAILPSVSGGGLARGKTQEYAIELKPGEYLYSCPLNTTPDYKLVVK 159          
BLAST of mRNA_P-wetherbeei_contig1687.5.1 vs. uniprot
Match: A0A0S8C3Y7_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium SG8_41 TaxID=1703391 RepID=A0A0S8C3Y7_9PROT)

HSP 1 Score: 171 bits (434), Expect = 3.430e-52
Identity = 81/129 (62.79%), Postives = 97/129 (75.19%), Query Frame = 1
Query:   85 AGSNIVTLTQTACQFLESEGGVNHGYKTKRAADCREVNKKTGEQRSRAATPLTLKPGKYIFRVTNKDVPYELGFWLRGAGLA-RLIQPNVSGGGLTQGLTRDYSVELTTGTYAYSCPLNPTPDYPLVVK 468
            AG  +V LTQ  CQFLESEGG NHGY++ R  DC  +N KT ++R     P+ LKPG+YIFRVTN+DVPYELGFWLRGAGL+ R+  P+VSGGGLT G T+DY +EL  G Y +SCPLN TPDY L+V 
Sbjct:   13 AGPIVVELTQVPCQFLESEGGKNHGYRSSRKEDCEAINAKTAKERLAQTKPMVLKPGQYIFRVTNRDVPYELGFWLRGAGLSGRVALPSVSGGGLTTGKTQDYPIELKAGDYLFSCPLNTTPDYRLIVS 141          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1687.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TV20_9PROT2.340e-6667.13Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A351T6H5_9PROT6.880e-5763.85Uncharacterized protein n=2 Tax=Alphaproteobacteri... [more]
A0A522VJ53_9PROT3.190e-5464.89Uncharacterized protein n=2 Tax=Betaproteobacteria... [more]
W4L570_9BACT1.380e-5362.31Uncharacterized protein n=2 Tax=Candidatus Entothe... [more]
A0A3N1Y2H6_9GAMM3.470e-5362.40Uncharacterized protein n=1 Tax=Inmirania thermoth... [more]
A0A3M1FYX3_9PROT4.200e-5360.28Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A1A9F2Y0_9GAMM4.920e-5358.55Uncharacterized protein n=2 Tax=Marinobacterium Ta... [more]
UPI00135836467.690e-5365.60hypothetical protein n=1 Tax=Cognatazoarcus haloto... [more]
A0A661BKI9_9GAMM3.020e-5265.60Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A0S8C3Y7_9PROT3.430e-5262.79Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1687contigP-wetherbeei_contig1687:3667..4140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1121935.AQXX01000069_gene5888
Model size474
Max annot lvl2|Bacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue7.12e-52
EggNOG OGs2DVMI@1|root,33WD7@2|Bacteria
Cds size468
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186100.4398022-CDS-P-wetherbeei_contig1687:3666..41341683186100.4398022-CDS-P-wetherbeei_contig1687:3666..4134Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1687 3667..4134 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186100.4507494-UTR-P-wetherbeei_contig1687:4134..41401683186100.4507494-UTR-P-wetherbeei_contig1687:4134..4140Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1687 4135..4140 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1687.5.1prot_P-wetherbeei_contig1687.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1687 3667..4134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1687.5.1

>prot_P-wetherbeei_contig1687.5.1 ID=prot_P-wetherbeei_contig1687.5.1|Name=mRNA_P-wetherbeei_contig1687.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
MLLAGFIGATLIGPGAAQATLQSKAEAGSNIVTLTQTACQFLESEGGVNH
GYKTKRAADCREVNKKTGEQRSRAATPLTLKPGKYIFRVTNKDVPYELGF
WLRGAGLARLIQPNVSGGGLTQGLTRDYSVELTTGTYAYSCPLNPTPDYP
LVVKE*
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mRNA from alignment at P-wetherbeei_contig1687:3667..4140-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1687.5.1 ID=mRNA_P-wetherbeei_contig1687.5.1|Name=mRNA_P-wetherbeei_contig1687.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig1687:3667..4140- (Phaeothamnion wetherbeei SAG_119_79)
AAGCAGATGCTGCTTGCCGGTTTTATCGGCGCAACCCTGATCGGCCCGGG TGCCGCGCAGGCCACGCTTCAGAGTAAAGCCGAAGCCGGATCAAACATTG TTACCCTGACCCAGACAGCCTGTCAGTTTCTTGAATCCGAAGGCGGCGTC AATCATGGCTACAAGACGAAACGCGCGGCAGACTGTCGGGAGGTCAATAA AAAAACCGGCGAACAAAGATCACGCGCCGCCACCCCGCTTACCCTGAAAC CCGGTAAATATATTTTTCGCGTCACCAACAAAGACGTACCCTATGAGCTT GGCTTCTGGTTGCGTGGCGCAGGCTTGGCACGGCTCATTCAGCCGAATGT TTCCGGGGGCGGCCTGACCCAGGGGCTGACCCGCGATTACAGTGTTGAAC TTACAACAGGAACTTACGCCTATTCATGCCCGCTTAATCCGACTCCGGAT TATCCACTAGTTGTAAAGGAATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1687:3667..4140-

>mRNA_P-wetherbeei_contig1687.5.1 ID=mRNA_P-wetherbeei_contig1687.5.1|Name=mRNA_P-wetherbeei_contig1687.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig1687:3667..4140- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCTTGCCGGTTTTATCGGCGCAACCCTGATCGGCCCGGGTGCCGC
GCAGGCCACGCTTCAGAGTAAAGCCGAAGCCGGATCAAACATTGTTACCC
TGACCCAGACAGCCTGTCAGTTTCTTGAATCCGAAGGCGGCGTCAATCAT
GGCTACAAGACGAAACGCGCGGCAGACTGTCGGGAGGTCAATAAAAAAAC
CGGCGAACAAAGATCACGCGCCGCCACCCCGCTTACCCTGAAACCCGGTA
AATATATTTTTCGCGTCACCAACAAAGACGTACCCTATGAGCTTGGCTTC
TGGTTGCGTGGCGCAGGCTTGGCACGGCTCATTCAGCCGAATGTTTCCGG
GGGCGGCCTGACCCAGGGGCTGACCCGCGATTACAGTGTTGAACTTACAA
CAGGAACTTACGCCTATTCATGCCCGCTTAATCCGACTCCGGATTATCCA
CTAGTTGTAAAGGAATGA
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