mRNA_P-wetherbeei_contig16864.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16864.1.1
Unique NamemRNA_P-wetherbeei_contig16864.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16864.1.1 vs. uniprot
Match: A0A7Z9PRZ7_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PRZ7_9BACT)

HSP 1 Score: 180 bits (457), Expect = 2.830e-55
Identity = 88/157 (56.05%), Postives = 121/157 (77.07%), Query Frame = 1 
Query:    1 LKRIGEQINVILTAIYGKYVAQGCPTKLGGLRFLDVESAKTFAFEQTQETEGGNLLVLSAPVSDNREELEAKLKAGPHAELLRDIFVRNSPDVGKKNKFFVEVTFFLDTPAWLTDEAVSAVMERDNINGNDAIIVLLKKHVLPIAAALMDHFITSLR 471
            LKRIGE+I+++LT IYG+YVA+G PTKLGGLRFLDV SAKTFAFE+ Q  E GNLL++SAP   + +EL  ++KAGPH + + ++ VR S D GK++K FVEV+F L T +WL++E V+ V E +  NGN+A+ ++LK+ VLPIA  +M HFI+ +R
Sbjct:    8 LKRIGEEIDILLTEIYGEYVAEGSPTKLGGLRFLDVPSAKTFAFEKCQPYEDGNLLMISAPAVGDEKELTKQIKAGPHKKSIHEVVVRRSSDKGKESKSFVEVSFKLPTQSWLSEEDVTKVAEAEKCNGNEAVNLILKREVLPIARDVMAHFISVIR 164
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BLAST of mRNA_P-wetherbeei_contig16864.1.1 vs. uniprot
Match: A0A7X8XP49_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XP49_9BURK)

HSP 1 Score: 152 bits (385), Expect = 2.460e-44
Identity = 78/160 (48.75%), Postives = 114/160 (71.25%), Query Frame = 1 
Query:    1 LKRIGEQINVILTAIYGKYVAQGCPTKLGGLRFLDVESAKTFAFEQTQETEG--GNLLVLSAPVSDNREELEAKLKAGPHAELLRDIFVRNSPDVGKKNKFFVEVTFFLDTPAWLTDEAVSAVMERDNINGN-DAIIVLLKKHVLPIAAALMDHFITSLR 471
            L R+ +++NVILT I+G+YVAQG PTKLGGLRFLDV+S+KTFAFE+T+ +E   GNLLVLSAP     E++   L  GP+ + +R + VR S D GK +K FVEV +++ T +WLTDEA+    ++  +  + DA+  +LK+ VLP A+ +M++ I+ +R
Sbjct:   10 LDRLADEMNVILTDIFGRYVAQGSPTKLGGLRFLDVQSSKTFAFEKTEVSEDKTGNLLVLSAPYRGTEEDIRKALTKGPYGKEIRRVTVRGSADAGKADKRFVEVAYYMPTASWLTDEAIMDFAKKHKMTSSRDALTGILKEKVLPPASEVMEYLISEIR 169
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BLAST of mRNA_P-wetherbeei_contig16864.1.1 vs. uniprot
Match: A0A355TW91_9BACT (Uncharacterized protein n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TW91_9BACT)

HSP 1 Score: 136 bits (343), Expect = 1.090e-37
Identity = 77/183 (42.08%), Postives = 115/183 (62.84%), Query Frame = 1 
Query:    1 LKRIGEQINVILTAIYGKYVAQGCPTKLGGLRFLDVESAKTFAFEQTQETEGG--NLLVLSAP------------VSDNR-----------EELEAKLKAGPHAELLRDIFVRNSPDVGKKNKFFVEVTFFLDTPAWLTDEAVSAVMERDNI-NGNDAIIVLLKKHVLPIAAALMDHFITSLR 471
            L R+ +QINVILT I+ +YVAQG PTKLGGLRFLDVES+KTFAFE+T+ +E G  N+L+ SAP            V+D +           +E++  L  GPH + ++ + VR S D GK ++FF+EV +++ T  WL+DE + A  +   + N  DA++ +L++ +LP+A  +M   I +LR
Sbjct:    9 LSRVADQINVILTQIFRQYVAQGSPTKLGGLRFLDVESSKTFAFEKTEVSEDGKGNILLFSAPYASIDQDKEPTEVTDKKVVEADVVERVKKEVKQILSVGPHGKDIQCLIVRPSKDAGKSDRFFIEVGYYIPTSEWLSDENIIAYAKEHRLDNMRDALVRILEEKILPMADGIMQFLIHNLR 191
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16864.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7Z9PRZ7_9BACT2.830e-5556.05Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A7X8XP49_9BURK2.460e-4448.75Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
A0A355TW91_9BACT1.090e-3742.08Uncharacterized protein n=1 Tax=bacterium UBP9_UBA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16864contigP-wetherbeei_contig16864:2..472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size471
Hectar predicted targeting categoryother localisation
Exons1
Cds size471
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186100.2031002-CDS-P-wetherbeei_contig16864:1..4721683186100.2031002-CDS-P-wetherbeei_contig16864:1..472Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16864 2..472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16864.1.1prot_P-wetherbeei_contig16864.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16864 2..472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16864.1.1

>prot_P-wetherbeei_contig16864.1.1 ID=prot_P-wetherbeei_contig16864.1.1|Name=mRNA_P-wetherbeei_contig16864.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
LKRIGEQINVILTAIYGKYVAQGCPTKLGGLRFLDVESAKTFAFEQTQET
EGGNLLVLSAPVSDNREELEAKLKAGPHAELLRDIFVRNSPDVGKKNKFF
VEVTFFLDTPAWLTDEAVSAVMERDNINGNDAIIVLLKKHVLPIAAALMD
HFITSLR
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mRNA from alignment at P-wetherbeei_contig16864:2..472+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16864.1.1 ID=mRNA_P-wetherbeei_contig16864.1.1|Name=mRNA_P-wetherbeei_contig16864.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig16864:2..472+ (Phaeothamnion wetherbeei SAG_119_79)
CTCAAACGGATCGGCGAGCAAATCAATGTGATCCTGACGGCCATCTATGG
CAAATACGTGGCCCAGGGCTGCCCCACCAAGCTGGGCGGACTGCGATTCC
TGGATGTAGAAAGCGCCAAGACTTTCGCGTTCGAACAGACGCAGGAAACC
GAGGGCGGTAATCTCCTCGTTCTATCGGCTCCCGTTTCCGACAACCGCGA
AGAGCTCGAAGCCAAGCTCAAGGCCGGCCCGCACGCCGAACTGCTGCGCG
ACATCTTCGTCCGCAACAGCCCCGACGTCGGCAAGAAGAACAAATTCTTC
GTCGAGGTCACTTTCTTCCTCGACACCCCCGCCTGGCTCACCGACGAAGC
GGTGTCCGCCGTCATGGAGCGCGACAACATCAACGGTAACGACGCGATCA
TCGTTCTGCTCAAAAAGCACGTTCTCCCGATCGCGGCAGCTTTGATGGAT
CACTTCATCACCAGCCTCCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16864:2..472+

>mRNA_P-wetherbeei_contig16864.1.1 ID=mRNA_P-wetherbeei_contig16864.1.1|Name=mRNA_P-wetherbeei_contig16864.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig16864:2..472+ (Phaeothamnion wetherbeei SAG_119_79)
CTCAAACGGATCGGCGAGCAAATCAATGTGATCCTGACGGCCATCTATGG
CAAATACGTGGCCCAGGGCTGCCCCACCAAGCTGGGCGGACTGCGATTCC
TGGATGTAGAAAGCGCCAAGACTTTCGCGTTCGAACAGACGCAGGAAACC
GAGGGCGGTAATCTCCTCGTTCTATCGGCTCCCGTTTCCGACAACCGCGA
AGAGCTCGAAGCCAAGCTCAAGGCCGGCCCGCACGCCGAACTGCTGCGCG
ACATCTTCGTCCGCAACAGCCCCGACGTCGGCAAGAAGAACAAATTCTTC
GTCGAGGTCACTTTCTTCCTCGACACCCCCGCCTGGCTCACCGACGAAGC
GGTGTCCGCCGTCATGGAGCGCGACAACATCAACGGTAACGACGCGATCA
TCGTTCTGCTCAAAAAGCACGTTCTCCCGATCGCGGCAGCTTTGATGGAT
CACTTCATCACCAGCCTCCGC
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