mRNA_P-wetherbeei_contig16861.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16861.2.1
Unique NamemRNA_P-wetherbeei_contig16861.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16861.2.1 vs. uniprot
Match: A0A521WCG5_9CHLR (Tripartite tricarboxylate transporter substrate binding protein (Fragment) n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A521WCG5_9CHLR)

HSP 1 Score: 183 bits (465), Expect = 9.120e-58
Identity = 89/119 (74.79%), Postives = 101/119 (84.87%), Query Frame = 1
Query:    1 AGALLAVLSSLAFAQTYPDKPIRVIVPVPAGGTPDVVARMVTPGLSNLLGQQLVVDNRGGAGGLIGAEMAARAIPDGYTLFFSSPGSLVILPYLQKHVNYDTLRDFTPISLVSVGPFLL 357
            AG  +A++  LA AQ YPDKPIRVIVPVPAGGTPDVVARMV PGLS+LLGQQLV+DNRGGAG LIG E+A RA+PDGYTL FSSPG L ILP+L K ++YD LRDF P+SLV +GPFLL
Sbjct:   10 AGLAVALMPVLAVAQAYPDKPIRVIVPVPAGGTPDVVARMVAPGLSSLLGQQLVIDNRGGAGALIGTELAVRAVPDGYTLLFSSPGGLTILPHLHKKISYDPLRDFAPVSLVCIGPFLL 128          
BLAST of mRNA_P-wetherbeei_contig16861.2.1 vs. uniprot
Match: A0A1F4ABS1_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F4ABS1_9PROT)

HSP 1 Score: 163 bits (413), Expect = 2.100e-47
Identity = 78/116 (67.24%), Postives = 96/116 (82.76%), Query Frame = 1
Query:   10 LLAVLSSLAFAQTYPDKPIRVIVPVPAGGTPDVVARMVTPGLSNLLGQQLVVDNRGGAGGLIGAEMAARAIPDGYTLFFSSPGSLVILPYLQKHVNYDTLRDFTPISLVSVGPFLL 357
            +LA L+ LA AQ YPDKPIRVI+PVPAGGTPDV+AR VTPG++ +LGQ LV+DNRGGAGG I AE+ ARA PDGYT+F +SPG+L I+P++ K+V YDT +DF PI L+S G FLL
Sbjct:   12 VLATLAPLAAAQAYPDKPIRVILPVPAGGTPDVLARHVTPGMAEMLGQSLVIDNRGGAGGRIAAELVARAAPDGYTIFLTSPGALTIVPHVSKNVPYDTHKDFAPIGLISKGAFLL 127          
BLAST of mRNA_P-wetherbeei_contig16861.2.1 vs. uniprot
Match: UPI0019B708E9 (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019B708E9)

HSP 1 Score: 163 bits (413), Expect = 2.260e-47
Identity = 78/116 (67.24%), Postives = 96/116 (82.76%), Query Frame = 1
Query:   10 LLAVLSSLAFAQTYPDKPIRVIVPVPAGGTPDVVARMVTPGLSNLLGQQLVVDNRGGAGGLIGAEMAARAIPDGYTLFFSSPGSLVILPYLQKHVNYDTLRDFTPISLVSVGPFLL 357
            ++  L  LA AQ++PD+P+RVIVPVPAGGTPDV+AR+VT  +  LLGQ +V+DNRGGAGG+IGAE+AA+AIPDGYTLF SSPG +VILP+LQK   YD + DF PI L+S GPFLL
Sbjct:   15 IVLALPGLAPAQSWPDRPVRVIVPVPAGGTPDVIARLVTAPMGALLGQTMVIDNRGGAGGMIGAEVAAKAIPDGYTLFLSSPGPMVILPHLQKKTGYDPIVDFAPIGLISSGPFLL 130          
BLAST of mRNA_P-wetherbeei_contig16861.2.1 vs. uniprot
Match: A0A3N5WVI0_9PROT (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5WVI0_9PROT)

HSP 1 Score: 160 bits (406), Expect = 3.160e-46
Identity = 81/117 (69.23%), Postives = 94/117 (80.34%), Query Frame = 1
Query:    7 ALLAVLSSLAFAQTYPDKPIRVIVPVPAGGTPDVVARMVTPGLSNLLGQQLVVDNRGGAGGLIGAEMAARAIPDGYTLFFSSPGSLVILPYLQKHVNYDTLRDFTPISLVSVGPFLL 357
            AL  +   +A AQ +PDKPIRVI+ VPAG TPDV AR+V PGLS  LGQ LV DNR GAGGLIGAE+AA A PDGYTLF SSPG+L ILP+L++ V YDTLRDF PISL+S+GPF+L
Sbjct:   23 ALTLLAPPVAAAQAWPDKPIRVILSVPAGATPDVTARLVFPGLSQQLGQPLVADNRPGAGGLIGAEIAANATPDGYTLFISSPGALTILPHLRQKVPYDTLRDFAPISLISIGPFVL 139          
BLAST of mRNA_P-wetherbeei_contig16861.2.1 vs. uniprot
Match: A0A1F4A7D5_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F4A7D5_9PROT)

HSP 1 Score: 159 bits (401), Expect = 1.420e-45
Identity = 75/118 (63.56%), Postives = 94/118 (79.66%), Query Frame = 1
Query:    4 GALLAVLSSLAFAQTYPDKPIRVIVPVPAGGTPDVVARMVTPGLSNLLGQQLVVDNRGGAGGLIGAEMAARAIPDGYTLFFSSPGSLVILPYLQKHVNYDTLRDFTPISLVSVGPFLL 357
            GA++A    LA AQ YP KP+RVI+  PAGGTPDVVARMV PGLS+ LGQQ ++DNRGGAGGLI  E+ A+A PDGYTLF   PGSL I+P+L++++ YDTLRD  P+SL+ +GP+LL
Sbjct:   13 GAVVAAAPFLALAQAYPLKPVRVILASPAGGTPDVVARMVAPGLSSRLGQQFIIDNRGGAGGLIATELTAKAHPDGYTLFIGGPGSLTIIPHLRQNMPYDTLRDLAPVSLIVIGPYLL 130          
BLAST of mRNA_P-wetherbeei_contig16861.2.1 vs. uniprot
Match: A0A1F4D7T8_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4D7T8_9PROT)

HSP 1 Score: 154 bits (389), Expect = 7.590e-45
Identity = 77/109 (70.64%), Postives = 92/109 (84.40%), Query Frame = 1
Query:    1 AGALLAVLSSLAFAQTYPDKPIRVIVPVPAGGTPDVVARMVTPGLSNLLGQQLVVDNRGGAGGLIGAEMAARAIPDGYTLFFSSPGSLVILPYLQKHVNYDTLRDFTPI 327
            AG   A+L+ LA AQ YP+KPIRVI+ VPAG TPD+ AR++TPGLS LLGQQLVVDNR GAGGLIGAE+A++A PDGYT+F SSPG+L ILP+L+K + YDTLRDF PI
Sbjct:    9 AGLAAALLAPLAAAQDYPNKPIRVILSVPAGATPDLTARLLTPGLSQLLGQQLVVDNRPGAGGLIGAEIASKATPDGYTVFISSPGALTILPHLRKSMPYDTLRDFAPI 117          
BLAST of mRNA_P-wetherbeei_contig16861.2.1 vs. uniprot
Match: A0A3N5N9J1_9PROT (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5N9J1_9PROT)

HSP 1 Score: 150 bits (380), Expect = 4.370e-42
Identity = 77/114 (67.54%), Postives = 90/114 (78.95%), Query Frame = 1
Query:   16 AVLSSLAFAQTYPDKPIRVIVPVPAGGTPDVVARMVTPGLSNLLGQQLVVDNRGGAGGLIGAEMAARAIPDGYTLFFSSPGSLVILPYLQKHVNYDTLRDFTPISLVSVGPFLL 357
            A+  S A AQ+YP+KP+RVIVPVPAGGTPD+ AR+V P LS LL QQ VVDNR GAG LIGAE+AA+A PDGYTL FSS G L ILP+LQK + Y  L+D  PISL+S GPF+L
Sbjct:   52 ALHQSFASAQSYPNKPVRVIVPVPAGGTPDITARLVMPELSGLLKQQFVVDNRPGAGSLIGAEIAAKAQPDGYTLLFSSGGPLTILPHLQKKMPYRPLQDLAPISLISSGPFVL 165          
BLAST of mRNA_P-wetherbeei_contig16861.2.1 vs. uniprot
Match: A0A7X1TVQ8_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7X1TVQ8_9PROT)

HSP 1 Score: 143 bits (360), Expect = 9.780e-38
Identity = 66/106 (62.26%), Postives = 83/106 (78.30%), Query Frame = 1
Query:   40 AQTYPDKPIRVIVPVPAGGTPDVVARMVTPGLSNLLGQQLVVDNRGGAGGLIGAEMAARAIPDGYTLFFSSPGSLVILPYLQKHVNYDTLRDFTPISLVSVGPFLL 357
            AQ YP+KP+RV+V  PA  TPD+VAR+VTPGLS L GQQ +VDNR GA G++G E+AA+A PDGYTL   +P +L I+ Y+ K V YD LRDF+PI L+SVGP+LL
Sbjct:  273 AQDYPNKPVRVLVATPARSTPDMVARLVTPGLSTLFGQQFLVDNRSGANGMLGTELAAKATPDGYTLVMGTPSTLTIMRYVHKDVPYDALRDFSPIGLISVGPYLL 378          
BLAST of mRNA_P-wetherbeei_contig16861.2.1 vs. uniprot
Match: A0A1F4DLI1_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4DLI1_9PROT)

HSP 1 Score: 138 bits (347), Expect = 1.490e-37
Identity = 73/118 (61.86%), Postives = 86/118 (72.88%), Query Frame = 1
Query:    7 ALLAVLSSL-AFAQTYPDKPIRVIVPVPAGGTPDVVARMVTPGLSNLLGQQLVVDNRGGAGGLIGAEMAARAIPDGYTLFFSSPGSLVILPYLQKHVNYDTLRDFTPISLVSVGPFLL 357
            AL  VLS L A AQ YP++PIRVIVP PAG   D+  R+VTP LS L GQQ VVDNR GAGG IG E+AAR+  DGYTL   +PG+L I+ +LQK + Y TLRDF PI L+S GP+LL
Sbjct:    8 ALPVVLSPLLAAAQDYPNRPIRVIVPTPAGSASDMSLRLVTPDLSALFGQQFVVDNRAGAGGRIGTELAARSSADGYTLVLGTPGTLTIMQHLQKDLPYQTLRDFAPIGLISQGPYLL 125          
BLAST of mRNA_P-wetherbeei_contig16861.2.1 vs. uniprot
Match: A0A3N5NNH1_9PROT (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5NNH1_9PROT)

HSP 1 Score: 132 bits (331), Expect = 5.300e-35
Identity = 64/112 (57.14%), Postives = 80/112 (71.43%), Query Frame = 1
Query:   22 LSSLAFAQTYPDKPIRVIVPVPAGGTPDVVARMVTPGLSNLLGQQLVVDNRGGAGGLIGAEMAARAIPDGYTLFFSSPGSLVILPYLQKHVNYDTLRDFTPISLVSVGPFLL 357
            LSS   A  YPDKP+RV+VP  AG TPDVVAR V PGL   LG + ++DNRGGA GLIG E+AARA PDG+TL   +  +L ++ +L K V +D L+DF PI LVSV P+L+
Sbjct:   33 LSSALTATEYPDKPVRVLVPTLAGSTPDVVARAVAPGLGVRLGNRFIIDNRGGANGLIGTELAARATPDGHTLLLGTTATLTVMRHLHKEVPFDALKDFVPIGLVSVRPYLV 144          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16861.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521WCG5_9CHLR9.120e-5874.79Tripartite tricarboxylate transporter substrate bi... [more]
A0A1F4ABS1_9PROT2.100e-4767.24Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
UPI0019B708E92.260e-4767.24Tripartite tricarboxylate transporter substrate bi... [more]
A0A3N5WVI0_9PROT3.160e-4669.23Tripartite tricarboxylate transporter substrate bi... [more]
A0A1F4A7D5_9PROT1.420e-4563.56Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4D7T8_9PROT7.590e-4570.64Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A3N5N9J1_9PROT4.370e-4267.54Tripartite tricarboxylate transporter substrate bi... [more]
A0A7X1TVQ8_9PROT9.780e-3862.26Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4DLI1_9PROT1.490e-3761.86Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A3N5NNH1_9PROT5.300e-3557.14Tripartite tricarboxylate transporter substrate bi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16861contigP-wetherbeei_contig16861:1064..1420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog189753.AXAS01000008_gene6778
PFAMsTctC
Model size357
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.5e-32
EggNOG OGsCOG3181@1|root,COG3181@2|Bacteria,1MU58@1224|Proteobacteria,2TQWK@28211|Alphaproteobacteria,3JVJ7@41294|Bradyrhizobiaceae
DescriptionTripartite tricarboxylate transporter family receptor
Cds size357
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186100.1432998-CDS-P-wetherbeei_contig16861:1063..14201683186100.1432998-CDS-P-wetherbeei_contig16861:1063..1420Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16861 1064..1420 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16861.2.1prot_P-wetherbeei_contig16861.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16861 1064..1420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16861.2.1

>prot_P-wetherbeei_contig16861.2.1 ID=prot_P-wetherbeei_contig16861.2.1|Name=mRNA_P-wetherbeei_contig16861.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=119bp
AGALLAVLSSLAFAQTYPDKPIRVIVPVPAGGTPDVVARMVTPGLSNLLG
QQLVVDNRGGAGGLIGAEMAARAIPDGYTLFFSSPGSLVILPYLQKHVNY
DTLRDFTPISLVSVGPFLL
back to top

mRNA from alignment at P-wetherbeei_contig16861:1064..1420+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16861.2.1 ID=mRNA_P-wetherbeei_contig16861.2.1|Name=mRNA_P-wetherbeei_contig16861.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig16861:1064..1420+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGGTGCGCTGCTCGCAGTATTGTCGTCGCTCGCATTTGCACAGACCTA TCCAGACAAACCGATTCGCGTGATCGTGCCGGTGCCAGCAGGGGGTACGC CGGATGTCGTCGCGCGCATGGTGACTCCCGGCTTGTCGAATCTGCTCGGT CAGCAACTGGTGGTCGACAATCGCGGCGGCGCCGGCGGCTTGATAGGCGC GGAAATGGCGGCGCGGGCAATTCCTGATGGCTACACGCTGTTCTTCAGCA GCCCGGGTTCGCTGGTCATCCTGCCTTACCTGCAGAAACATGTTAATTAC GACACGCTGCGCGATTTCACGCCAATAAGCCTGGTGTCGGTCGGGCCCTT TCTGCTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig16861:1064..1420+

>mRNA_P-wetherbeei_contig16861.2.1 ID=mRNA_P-wetherbeei_contig16861.2.1|Name=mRNA_P-wetherbeei_contig16861.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig16861:1064..1420+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGGTGCGCTGCTCGCAGTATTGTCGTCGCTCGCATTTGCACAGACCTA
TCCAGACAAACCGATTCGCGTGATCGTGCCGGTGCCAGCAGGGGGTACGC
CGGATGTCGTCGCGCGCATGGTGACTCCCGGCTTGTCGAATCTGCTCGGT
CAGCAACTGGTGGTCGACAATCGCGGCGGCGCCGGCGGCTTGATAGGCGC
GGAAATGGCGGCGCGGGCAATTCCTGATGGCTACACGCTGTTCTTCAGCA
GCCCGGGTTCGCTGGTCATCCTGCCTTACCTGCAGAAACATGTTAATTAC
GACACGCTGCGCGATTTCACGCCAATAAGCCTGGTGTCGGTCGGGCCCTT
TCTGCTC
back to top