mRNA_P-wetherbeei_contig16857.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16857.1.1
Unique NamemRNA_P-wetherbeei_contig16857.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16857.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16857contigP-wetherbeei_contig16857:361..1479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size820
Hectar predicted targeting categoryother localisation
Exons2
Cds size816
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186099.8841155-CDS-P-wetherbeei_contig16857:362..10811683186099.8841155-CDS-P-wetherbeei_contig16857:362..1081Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16857 363..1081 -
1683186099.8932114-CDS-P-wetherbeei_contig16857:1382..14791683186099.8932114-CDS-P-wetherbeei_contig16857:1382..1479Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16857 1383..1479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16857.1.1prot_P-wetherbeei_contig16857.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16857 363..1479 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16857.1.1

>prot_P-wetherbeei_contig16857.1.1 ID=prot_P-wetherbeei_contig16857.1.1|Name=mRNA_P-wetherbeei_contig16857.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=272bp
GTHNIFLNHDFSGFLFFVVSPSLDAAAMEDMRSGGAAARQDQFLQPPHPL
SHQQPLFMDLAALDTSVHGSLGAFASTQRASGPSIFDAGPLSSFLSDANG
HAPFLAGPNGIGFGAPPTGGSGGDGGADGNGNSGGSSGADTAAAAVPHGV
GSGLDAAKNSIALAGQADEVNGGASAAGRQLQMPYPQFLHLAGGIAPWGM
PGMQIGLQPPMAEPGMPSAAATVGGAVRAGAVRAGAAAAGMPGAAGVLPL
HHLPFGHHPHLTHHHQQQLHYP
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mRNA from alignment at P-wetherbeei_contig16857:361..1479-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16857.1.1 ID=mRNA_P-wetherbeei_contig16857.1.1|Name=mRNA_P-wetherbeei_contig16857.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1119bp|location=Sequence derived from alignment at P-wetherbeei_contig16857:361..1479- (Phaeothamnion wetherbeei SAG_119_79)
GGAACCCATAATATATTCCTGAACCATGATTTTAGTGGATTTTTGTTTTT
CGTCGTCTCCCCGTCCCTGGACGCGGCAGCAATGGAGGACATGAGAAGTG
AGTATAGTGAGTTGCGTTTTTTCGGCGCCGCATGCTTTTCTTGGCTTCGT
CGTGTTTTGAAAAGCATCCTTTGGGCTCAAATAACCACAGGCATGAAAAT
CTGGAAGAAATCTTGAGATTGGAATTGAAAAATGGTATCTAAATGCATAC
TTCCTGCCCTGGCGTTGGTGTTACTGGTGTTGGACCGCCTCGCGTCTCCT
GTTCCGCGCATGCATGTTTGTGTAACAATGGTGGAGCTCGCTCGTTCCTT
ACCCGCTTAGCTTTTCTGCACTCCTACCCATTTCTTCGACGCCTTCAGGC
GGCGGCGCTGCAGCCCGGCAAGACCAGTTCCTGCAGCCGCCACACCCACT
CAGCCACCAGCAGCCACTCTTTATGGACCTGGCGGCGCTGGACACGTCGG
TACACGGTTCTCTGGGCGCTTTTGCGTCCACCCAGCGAGCCAGTGGCCCC
AGCATCTTTGACGCTGGCCCCTTGTCGTCGTTTCTGAGCGACGCAAACGG
CCACGCGCCGTTCCTCGCCGGTCCGAACGGCATCGGTTTTGGAGCTCCCC
CCACCGGCGGCAGCGGTGGCGACGGCGGCGCTGATGGCAATGGCAACAGC
GGCGGCAGCAGCGGAGCGGACACTGCGGCTGCTGCCGTGCCTCACGGCGT
TGGTAGCGGCTTGGACGCCGCGAAAAATAGCATAGCGCTGGCAGGCCAGG
CCGACGAAGTCAACGGCGGTGCGTCTGCCGCGGGCCGGCAACTGCAAATG
CCGTACCCGCAGTTCTTGCACTTGGCCGGAGGCATCGCCCCATGGGGTAT
GCCCGGGATGCAGATTGGCCTCCAGCCGCCCATGGCTGAGCCCGGAATGC
CCTCAGCGGCTGCAACAGTGGGAGGAGCGGTGCGGGCGGGAGCGGTGCGG
GCGGGAGCGGCAGCGGCAGGAATGCCAGGGGCTGCAGGGGTGCTGCCGCT
GCACCACTTGCCGTTCGGCCACCATCCGCACCTTACGCACCACCACCAGC
AACAGTTGCACTACCCTCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16857:361..1479-

>mRNA_P-wetherbeei_contig16857.1.1 ID=mRNA_P-wetherbeei_contig16857.1.1|Name=mRNA_P-wetherbeei_contig16857.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=816bp|location=Sequence derived from alignment at P-wetherbeei_contig16857:361..1479- (Phaeothamnion wetherbeei SAG_119_79)
GGAACCCATAATATATTCCTGAACCATGATTTTAGTGGATTTTTGTTTTT
CGTCGTCTCCCCGTCCCTGGACGCGGCAGCAATGGAGGACATGAGAAGCG
GCGGCGCTGCAGCCCGGCAAGACCAGTTCCTGCAGCCGCCACACCCACTC
AGCCACCAGCAGCCACTCTTTATGGACCTGGCGGCGCTGGACACGTCGGT
ACACGGTTCTCTGGGCGCTTTTGCGTCCACCCAGCGAGCCAGTGGCCCCA
GCATCTTTGACGCTGGCCCCTTGTCGTCGTTTCTGAGCGACGCAAACGGC
CACGCGCCGTTCCTCGCCGGTCCGAACGGCATCGGTTTTGGAGCTCCCCC
CACCGGCGGCAGCGGTGGCGACGGCGGCGCTGATGGCAATGGCAACAGCG
GCGGCAGCAGCGGAGCGGACACTGCGGCTGCTGCCGTGCCTCACGGCGTT
GGTAGCGGCTTGGACGCCGCGAAAAATAGCATAGCGCTGGCAGGCCAGGC
CGACGAAGTCAACGGCGGTGCGTCTGCCGCGGGCCGGCAACTGCAAATGC
CGTACCCGCAGTTCTTGCACTTGGCCGGAGGCATCGCCCCATGGGGTATG
CCCGGGATGCAGATTGGCCTCCAGCCGCCCATGGCTGAGCCCGGAATGCC
CTCAGCGGCTGCAACAGTGGGAGGAGCGGTGCGGGCGGGAGCGGTGCGGG
CGGGAGCGGCAGCGGCAGGAATGCCAGGGGCTGCAGGGGTGCTGCCGCTG
CACCACTTGCCGTTCGGCCACCATCCGCACCTTACGCACCACCACCAGCA
ACAGTTGCACTACCCT
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