mRNA_P-wetherbeei_contig16853.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16853.1.1
Unique NamemRNA_P-wetherbeei_contig16853.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16853.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16853contigP-wetherbeei_contig16853:6..1007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1002
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_007020.1
Cds size891
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186099.7586472-UTR-P-wetherbeei_contig16853:5..671683186099.7586472-UTR-P-wetherbeei_contig16853:5..67Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16853 6..67 -
1683186099.7744615-UTR-P-wetherbeei_contig16853:958..10071683186099.7744615-UTR-P-wetherbeei_contig16853:958..1007Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16853 959..1007 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186099.7668948-CDS-P-wetherbeei_contig16853:67..9581683186099.7668948-CDS-P-wetherbeei_contig16853:67..958Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16853 68..958 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16853.1.1prot_P-wetherbeei_contig16853.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16853 68..958 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16853.1.1

>prot_P-wetherbeei_contig16853.1.1 ID=prot_P-wetherbeei_contig16853.1.1|Name=mRNA_P-wetherbeei_contig16853.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=297bp
MLTLTVSSVQDAFAKADVKAAEERAGESRNRRRRLPLPVAERLVAALTTV
AFGLRCAMLVEGGSCVDTGTAVALVLELPRLAEHISVLRLTEDGGDDMVG
NAFFVNRRLLGERLKSLEGASGRIEQAGSRKDLDFLLINVERALGAPVND
TVRLGTAFATEVGYLFARSSGASTGDIALPTPGDPTALAGWLLEYPSVYV
NSTAAGNCLSMVPLRVYEICLGTHQPPLATADDDAMKANHCLCQFSFSVP
DTLAEMAAALVTAFVKVLEARVAGVDDSRRGVRMTERVTTLPQVAL*
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mRNA from alignment at P-wetherbeei_contig16853:6..1007-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16853.1.1 ID=mRNA_P-wetherbeei_contig16853.1.1|Name=mRNA_P-wetherbeei_contig16853.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1002bp|location=Sequence derived from alignment at P-wetherbeei_contig16853:6..1007- (Phaeothamnion wetherbeei SAG_119_79)
CCTGGGACTTCCACAGTGTTGAGGGTGAGGGATCCATTAAAAAGAATACA
TGTTGACCCTTACAGTGTCTAGCGTTCAAGACGCGTTCGCCAAAGCGGAT
GTCAAGGCTGCAGAGGAGCGAGCTGGAGAATCGCGGAACAGGCGTCGTCG
ATTGCCGCTGCCGGTGGCAGAACGGCTCGTGGCCGCCTTGACCACCGTAG
CATTCGGCTTGCGGTGCGCCATGCTCGTGGAAGGCGGCAGCTGCGTGGAT
ACGGGTACGGCCGTGGCTTTGGTCCTGGAACTCCCTCGCCTCGCTGAACA
CATCAGCGTGCTTCGATTGACAGAAGACGGAGGCGACGACATGGTTGGCA
ACGCCTTCTTCGTAAATCGGCGTCTGCTTGGTGAACGACTGAAATCGCTG
GAAGGTGCTTCGGGTCGTATTGAACAAGCGGGCTCACGGAAGGATCTGGA
CTTTCTTTTGATCAACGTGGAACGTGCACTCGGAGCGCCAGTGAATGACA
CGGTGCGGCTAGGTACCGCATTCGCGACAGAGGTGGGATATCTCTTTGCG
CGGAGTTCGGGTGCCAGCACCGGAGACATTGCGCTGCCAACTCCCGGCGA
TCCGACAGCACTGGCGGGCTGGTTGCTGGAATACCCTTCCGTCTACGTGA
ATAGTACGGCTGCCGGCAATTGTCTGTCCATGGTGCCGCTGCGCGTCTAT
GAAATTTGCCTCGGGACCCACCAGCCGCCGCTGGCAACGGCCGATGATGA
CGCAATGAAAGCAAATCATTGCCTCTGCCAGTTCAGCTTCAGCGTTCCCG
ACACGCTAGCGGAAATGGCGGCCGCTTTAGTTACGGCGTTTGTGAAAGTC
TTGGAGGCACGCGTCGCCGGAGTGGACGACTCACGGCGAGGCGTCCGCAT
GACTGAACGCGTGACGACACTGCCGCAAGTTGCATTGTGATAATAGGTCC
CCCTTCGATGGTCTGGAGAGGATATAAACTGGAAGTTTGCATGCCCTTTG
TT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16853:6..1007-

>mRNA_P-wetherbeei_contig16853.1.1 ID=mRNA_P-wetherbeei_contig16853.1.1|Name=mRNA_P-wetherbeei_contig16853.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=891bp|location=Sequence derived from alignment at P-wetherbeei_contig16853:6..1007- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGACCCTTACAGTGTCTAGCGTTCAAGACGCGTTCGCCAAAGCGGA
TGTCAAGGCTGCAGAGGAGCGAGCTGGAGAATCGCGGAACAGGCGTCGTC
GATTGCCGCTGCCGGTGGCAGAACGGCTCGTGGCCGCCTTGACCACCGTA
GCATTCGGCTTGCGGTGCGCCATGCTCGTGGAAGGCGGCAGCTGCGTGGA
TACGGGTACGGCCGTGGCTTTGGTCCTGGAACTCCCTCGCCTCGCTGAAC
ACATCAGCGTGCTTCGATTGACAGAAGACGGAGGCGACGACATGGTTGGC
AACGCCTTCTTCGTAAATCGGCGTCTGCTTGGTGAACGACTGAAATCGCT
GGAAGGTGCTTCGGGTCGTATTGAACAAGCGGGCTCACGGAAGGATCTGG
ACTTTCTTTTGATCAACGTGGAACGTGCACTCGGAGCGCCAGTGAATGAC
ACGGTGCGGCTAGGTACCGCATTCGCGACAGAGGTGGGATATCTCTTTGC
GCGGAGTTCGGGTGCCAGCACCGGAGACATTGCGCTGCCAACTCCCGGCG
ATCCGACAGCACTGGCGGGCTGGTTGCTGGAATACCCTTCCGTCTACGTG
AATAGTACGGCTGCCGGCAATTGTCTGTCCATGGTGCCGCTGCGCGTCTA
TGAAATTTGCCTCGGGACCCACCAGCCGCCGCTGGCAACGGCCGATGATG
ACGCAATGAAAGCAAATCATTGCCTCTGCCAGTTCAGCTTCAGCGTTCCC
GACACGCTAGCGGAAATGGCGGCCGCTTTAGTTACGGCGTTTGTGAAAGT
CTTGGAGGCACGCGTCGCCGGAGTGGACGACTCACGGCGAGGCGTCCGCA
TGACTGAACGCGTGACGACACTGCCGCAAGTTGCATTGTGA
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