mRNA_P-wetherbeei_contig1684.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1684.3.1
Unique NamemRNA_P-wetherbeei_contig1684.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1684.3.1 vs. uniprot
Match: A0A7S2UTN0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTN0_9STRA)

HSP 1 Score: 244 bits (623), Expect = 2.950e-76
Identity = 138/273 (50.55%), Postives = 176/273 (64.47%), Query Frame = 1
Query:  103 EEDAAMEITPAEAKELRRVFERLCDFSQVQSALKEIAARRDRLAAL--------------------QRGDNTAPGS-----SGKPGILVLSDV---QVRLEAEALTAEMKHLEEEVARLQANPNKRIRAIDVLENMKYLGKACGKKEVADMIWEVDEDLDGCVDWAEFRLMFHRNINDKTGLEPSKLHNMIQFMIYDVDSSGRVSVDETMNMLYARYGRVRMEAKLKELFGEEMRETGTQGGEINFLQYLEAVERTQLQTFLNSTAGRAQLAK 837
            EED    ITP E +EL R +  LC F +     KE A +R R   L                    Q G   A        S    +  +  V   Q++ +   LTAE+  +E ++  L+++P+K+IRA D++E +++LGK   KKEVADMIWEVDE+LDGCVDW E+RLMF RNI D+TGLEPSKL+NM+QFMIYD D+ G VSVD+TMNMLYARYGR RME KL+ELFG +MRE G QGGEI+FL YL+AVERTQ+ TFLN++ G+   AK
Sbjct:    5 EEDVPQNITPQEERELVRTYNHLCHFLKRSKLEKEAAPKRARRQELIDKVQTSKKIHEIRQQQELEQNGSALAQQQIDELDSSYADLAPMGSVEMAQMQDDINQLTAEINGIESQIEALRSDPDKKIRAPDLMEALRFLGKKVTKKEVADMIWEVDENLDGCVDWEEYRLMFQRNIFDRTGLEPSKLYNMVQFMIYDHDNKGLVSVDQTMNMLYARYGRSRMEQKLRELFGTDMRENGKQGGEIDFLTYLQAVERTQMNTFLNTSLGKTTAAK 277          
BLAST of mRNA_P-wetherbeei_contig1684.3.1 vs. uniprot
Match: A0A836CM15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM15_9STRA)

HSP 1 Score: 236 bits (602), Expect = 3.370e-73
Identity = 136/273 (49.82%), Postives = 176/273 (64.47%), Query Frame = 1
Query:  103 EEDAAMEITPAEAKELRRVFERLCDFSQVQSALKEIAARRDRLAALQRGDNTAPGSSGKPGILVLSDVQVRLEAEALTAEMKHLEEEVARLQA-NPNKRIRAIDVLENMKYLGKACGKKEVADMIWEVDEDLDGCVDWAEFRLMFHRNINDKTGLEPSKLHNM---------------------------IQFMIYDVDSSGRVSVDETMNMLYARYGRVRMEAKLKELFGEEMRETGTQGGEINFLQYLEAVERTQLQTFLNSTAGRAQLAK 837
            +E+   +I+P E +ELRRVF++LCDF+  Q+           L AL                + + +V    E + L  E+  L++++  L++ + +++I+AIDV ++M  LG+ C KKEV DMIWEVDE+LDGCVDW EFRLMF+RN+ND+TGLEPSKL+NM                           +QFM+YDV+ +G VSVDETMNMLYARYGR RME KLKELFGEEMRETGTQGGEI F QYL +VERTQL TFL +  G+A LAK
Sbjct:    5 DEEGLTQISPQEERELRRVFDKLCDFNAKQN-----------LTALHM-------------YMHMWNVCHTEEVDRLGGEIAALQQQLRALESPSGSQKIKAIDVSQSMAVLGRRCTKKEVMDMIWEVDENLDGCVDWEEFRLMFNRNVNDRTGLEPSKLYNMSFHAAKPRKKHAGLDDKPSHLLCLQAQVQFMVYDVNGNGLVSVDETMNMLYARYGRARMEVKLKELFGEEMRETGTQGGEITFTQYLASVERTQLATFLGTNMGKAHLAK 253          
BLAST of mRNA_P-wetherbeei_contig1684.3.1 vs. uniprot
Match: D7FRH9_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH9_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 1.740e-71
Identity = 109/143 (76.22%), Postives = 127/143 (88.81%), Query Frame = 1
Query:  409 DVLENMKYLGKACGKKEVADMIWEVDEDLDGCVDWAEFRLMFHRNINDKTGLEPSKLHNMIQFMIYDVDSSGRVSVDETMNMLYARYGRVRMEAKLKELFGEEMRETGTQGGEINFLQYLEAVERTQLQTFLNSTAGRAQLAK 837
            D+ E+MK+LGK C +KEV D++WEVDE+LDG VDW EF+LMF RNIND TGLEP+KL+NM+QFM+YDVD++  VSVDETMNMLYARYGR +MEAKLKELFGE MRETGTQGGEI FL+YLEAVERTQL TF+ S+ GRAQLAK
Sbjct:   15 DIWEHMKFLGKKCTRKEVTDIVWEVDENLDGLVDWDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYARYGRTKMEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGRAQLAK 157          
BLAST of mRNA_P-wetherbeei_contig1684.3.1 vs. uniprot
Match: F0Y9Y6_AURAN (EF-hand domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9Y6_AURAN)

HSP 1 Score: 218 bits (555), Expect = 2.810e-67
Identity = 112/180 (62.22%), Postives = 140/180 (77.78%), Query Frame = 1
Query:  310 VRLEAEALTAEMKHLEEEVARLQANPNKRIRAIDVLENMKYLGKACGKKEVADMIWEVDEDLDGCVDWAEFRLMFHRNINDKTGLEPSKLHNMIQFMIYDVDSSGRVSVDETMNMLYARYGRVRMEAKLKELFGEEMRETGTQGGEINFLQYLEAVERTQLQTFLNSTAGRAQLAKKKAA 849
            V  E + L  E++ L+ ++  ++A  +  I   D++E +K LGK   +K+V DMIWEVDEDLD CV+W E  LMF RNI D+TGLEPS+L N++QFMI+D D +G VSVDETMNMLYARYGRVRMEAKLKELFG++MRETGTQGGEI+FL YL AVE+TQL TFLNS  G+AQ+AK  +A
Sbjct:    2 VAAELQKLDDEIEELQIKLRTIEAESDGLISVQDLMEALKTLGKKTPRKDVEDMIWEVDEDLDCCVNWEEMLLMFQRNIRDRTGLEPSQLFNVVQFMIFDQDENGLVSVDETMNMLYARYGRVRMEAKLKELFGDDMRETGTQGGEIDFLTYLRAVEKTQLMTFLNSAHGKAQVAKAGSA 181          
BLAST of mRNA_P-wetherbeei_contig1684.3.1 vs. uniprot
Match: A0A8J2X371_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X371_9STRA)

HSP 1 Score: 215 bits (548), Expect = 4.260e-65
Identity = 115/247 (46.56%), Postives = 162/247 (65.59%), Query Frame = 1
Query:  103 EEDAAMEITPAEAKELRRVFERLCDFSQVQSALKEIAARRDRLAALQRGDNTAPGSSGKPGILVLSDVQVRLEAEALTAEMKHLEEEVARLQANPNKRIRAIDVLENMKYLGKACGKKEVADMIWEVDEDLDGCVDWAEFRLMFHRNINDKTGLEPSKLHNMIQFMIYDVDSSGRVSVDETMNMLYARYGRVRMEAKLKELFGEEMRETGTQGGEINFLQYLEAVERTQLQTFLNSTAGRAQLAKKK 843
            E + A EITP E  +LRRV   LCD+   +  LK +  ++D+L  L++          +  ILV S++Q      +L  +++ L +++  ++   +  +  +D+LE +K LG+   KK+   MIWEVDEDLDGCV W E RLMF RNI D TGLEPS+L N++ F+I+D+D  G VSVDETM +LYARYGR +ME +LK LFG++M+E G  GGEI+F+ YL AVE+TQL TFL S  G+A + KK+
Sbjct:    5 EGNEAAEITPQEENQLRRVHRLLCDYGAKKKVLKLLRPKQDQLEKLRQS-----ADDEQADILVASEIQ------SLETDVEKLRQDLQEIEKKSDGLVSCVDLLEALKTLGRKAQKKDAEAMIWEVDEDLDGCVSWDEMRLMFQRNIRDTTGLEPSQLFNVVMFLIFDLDEDGMVSVDETMELLYARYGRHKMEDRLKMLFGDDMKEEGKGGGEIDFVTYLRAVEKTQLATFLQSNYGKALVNKKQ 240          
BLAST of mRNA_P-wetherbeei_contig1684.3.1 vs. uniprot
Match: A0A6S9HP31_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9HP31_HETAK)

HSP 1 Score: 214 bits (546), Expect = 9.330e-65
Identity = 122/269 (45.35%), Postives = 176/269 (65.43%), Query Frame = 1
Query:  103 EEDAAMEITPAEAKELRRVFERLCDFSQVQSALKEIAARRDRLAALQRG----DNTAPGSSGKP---------------GILVLSDVQVRLEAEALTAEMKHLEEEVARLQ----ANPNKRIRAIDVLENMKYLGKACGKKEVADMIWEVDEDLDGCVDWAEFRLMFHRNINDKTGLEPSKLHNMIQFMIYDVDSSGRVSVDETMNMLYARYGRVRMEAKLKELFGEEMRETGTQGGEINFLQYLEAVERTQLQTFLNSTAGRAQLAKK 840
            EE+  + +T  E +ELRRVFERLCDF +     + I  R +R+  L++     +   P    K                G L + +   R E   L+AE++    E+A L+      P ++IR  D+LE  ++LG+   +K+V D+IWEVDE+LDG VDW EFRLMF RN+ D+TGLEP++L++M QFM+YD  ++GRV+VD+TM+MLYARYG+ +MEAKLK LFG +M+E+GT+GG I F QYL AV++TQL+TFL ++ G+ ++AKK
Sbjct:    6 EEEPIVPMTQQEERELRRVFERLCDFHKKMRLAQAIEPRVERMDELKKKYTVYEEPEPEDVWKMEEKTPEQLEREREARGRLEIPEGPERAEWATLSAEVEQHRAELAALERPPAGAPEQKIRPADLLEAARFLGRPATRKDVQDVIWEVDENLDGAVDWEEFRLMFERNVGDRTGLEPAQLYHMAQFMMYDARNTGRVTVDQTMSMLYARYGKAKMEAKLKILFGRDMKESGTEGGAITFQQYLMAVQKTQLETFLATSLGK-KIAKK 273          
BLAST of mRNA_P-wetherbeei_contig1684.3.1 vs. uniprot
Match: A0A812T3T1_SYMMI (Cam1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812T3T1_SYMMI)

HSP 1 Score: 195 bits (496), Expect = 2.580e-58
Identity = 92/149 (61.74%), Postives = 117/149 (78.52%), Query Frame = 1
Query:  373 LQANPNKRIRAIDVLENMKYLGKACGKKEVADMIWEVDEDLDGCVDWAEFRLMFHRNINDKTGLEPSKLHNMIQFMIYDVDSSGRVSVDETMNMLYARYGRVRMEAKLKELFGEEMRETGTQGGEINFLQYLEAVERTQLQTFLNSTAG 819
            L+ NP+++I   D+LE ++ L     KKEV +MIWEVD+DLDGC+DW EFRLMF RNI D  GLEPSK+ N+ QF+IYD + +GRVSVDETMNMLYARYGR +ME KLKELFGE M ETG +GGEI++ +++ AVE+ Q+QTF  +T G
Sbjct:   33 LETNPDRKISCNDILEMLRRLKAKTNKKEVQEMIWEVDDDLDGCIDWGEFRLMFTRNIMDNCGLEPSKMFNLTQFLIYDHNCNGRVSVDETMNMLYARYGRTKMETKLKELFGENMHETGREGGEISYQEFIRAVEKVQVQTFWGTTQG 181          
BLAST of mRNA_P-wetherbeei_contig1684.3.1 vs. uniprot
Match: A0A2R5GQD3_9STRA (Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQD3_9STRA)

HSP 1 Score: 188 bits (478), Expect = 4.360e-55
Identity = 109/225 (48.44%), Postives = 152/225 (67.56%), Query Frame = 1
Query:  124 ITPAEAKELRRVFERLCDF---SQVQSALKEIAARRDRLAALQRG-DNTAPGSSGKPGILVLSDVQVRLEAEALTAEMKHLEEEVARLQANPNKRIRAIDVLENMKYLGKACGKKEVADMIWEVDEDLDGCVDWAEFRLMFHRNINDKTGLEPSKLHNMIQFMIYDVDSSGRVSVDETMNMLYARYGRVRMEAKLKELFGEEMRETGTQGGEINFLQYLEAVERT 786
            I+  E KEL RV+  +C++   S++ + L+   ARRDRL A ++  DN     + K G  + S+ ++  E E L  E+  LE+EVA L ++P +RIR  D+ E +K LGK   KKE+ +MIWEVDE LDG VDW EF+L + RN+ D TGLEP +L N+IQFMIYD D SG+V+VDETM+MLY RYGR R+E ++K LFGE++  T    GE++F +Y  A++RT
Sbjct:   11 ISQNEEKELLRVYNTMCNYQPKSKLYARLQPQRARRDRLVAHRKAPDNIVV--TNKEGEAMSSE-EIEAEYETLRQEIAALEKEVAVLDSDPQRRIRPADLAECLKTLGKPNSKKEIEEMIWEVDESLDGVVDWEEFKLTYQRNLADTTGLEPCQLFNVIQFMIYDKDGSGKVTVDETMHMLYTRYGRDRLEGQMKLLFGEDL-STQDGDGELSFSEYCVAIQRT 231          
BLAST of mRNA_P-wetherbeei_contig1684.3.1 vs. uniprot
Match: A0A813C532_9DINO (TNNC2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813C532_9DINO)

HSP 1 Score: 187 bits (475), Expect = 2.590e-54
Identity = 105/242 (43.39%), Postives = 151/242 (62.40%), Query Frame = 1
Query:   82 AMTTAVVEEDAAMEITPAEAKELRRVFERLCDFS---QVQSALKEIAARRDRLAALQRGDNTAPGSSGKPGILVLSDVQVRLEAEALTAEMKHLEEEVARLQANPN-------KRIRAIDVLENMKYLGKACGKKEVADMIWEVDEDLDGCVDWAEFRLMFHRNINDKTGLEPSKLHNMIQFMIYDVDSSGRVSVDETMNMLYARYGRVRMEAKLKELFGEEMRETGTQGGEINFLQYLEAV 777
            A + A  E +A  ++T  E KEL RVFE LCDF+   ++ + LK    R+ ++ + ++             + +  D    L  + + AE++ LEEE+  ++A  N       K+++  D+ E + +LGK   KKE+ DMIWEVDE+LDGCVDW EF+LMF RNI D TG EP +L N++QFM+YDVD SG VSVDETM+MLYARYG+ R+E ++K LFG+++       G + FL YL+AV
Sbjct:   19 AGSMAAAEPEAPKDVTANELKELERVFEFLCDFAPKNKLNNLLKPKLERKQKILSYKKNPEA---------VKLEDDTGRELSDDLIDAELQRLEEEIGDIEAQINTIKSKQDKKVKPKDLQEALAFLGKRSSKKEIEDMIWEVDENLDGCVDWEEFQLMFQRNIKDTTGKEPFQLFNVVQFMMYDVDFSGEVSVDETMHMLYARYGKARLEREMKALFGDKLHNGN---GTLTFLDYLKAV 248          
BLAST of mRNA_P-wetherbeei_contig1684.3.1 vs. uniprot
Match: A0A7S4HP37_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HP37_9STRA)

HSP 1 Score: 185 bits (470), Expect = 5.330e-53
Identity = 111/277 (40.07%), Postives = 158/277 (57.04%), Query Frame = 1
Query:  124 ITPAEAKELRRVFERLCDFSQVQSALKEIAARRDRLAALQRGDNT---------------------------------APGSSGKPGILVLSDVQVRLEAEALTAEMKHLEEEVARLQANPNKRIRAIDVLENMKYLGKACGKKEVADMIWEVDEDLDGCVDWAEFRLMFHRNINDKTGLEPSKLHNMIQFMIYDVDSSGRVSVDETMNMLYARYGRVRMEAKLKELFGEE----MRETGTQGGEINFLQYLEAVERTQLQTFLNSTAGRAQLAKKK 843
            I+  E KEL+RV++++C +++    ++ + +  DRLA L+R +                                   A G SG    L+  +  VR E  +L  E K LE  +  +++ P + IR  D    ++ LG+   K+EV DM+WEVDE LDG VDW EF LMF RNI D +GLEP+  ++M+QFMIYD D +G VS+DETMNMLYAR GR +ME  + +LFG +    ++E G QGGEINF++Y + VE+ Q + F  S  GR  LA+KK
Sbjct:   29 ISAKEMKELKRVYQKMCYYAEKVHKIERLRSVTDRLAKLRRPERPRHRGXXXXXXXXXAGAGMAYQFRHSDGAVVVGGAGGDSGDDDSLL--EPAVRREVASLYTERKELESSLKEIRSRPEQHIRPQDTATALRELGRRVTKREVNDMMWEVDEKLDGVVDWEEFLLMFERNIRDTSGLEPASFYHMVQFMIYDRDDNGMVSIDETMNMLYARLGREKMETTITKLFGGDDGAPIKEVGQQGGEINFVRYWDVVEKEQTKMFSESELGR-NLAEKK 302          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1684.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2UTN0_9STRA2.950e-7650.55Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CM15_9STRA3.370e-7349.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FRH9_ECTSI1.740e-7176.22EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
F0Y9Y6_AURAN2.810e-6762.22EF-hand domain-containing protein n=1 Tax=Aureococ... [more]
A0A8J2X371_9STRA4.260e-6546.56Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6S9HP31_HETAK9.330e-6545.35Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A812T3T1_SYMMI2.580e-5861.74Cam1 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A2R5GQD3_9STRA4.360e-5548.44Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=23... [more]
A0A813C532_9DINO2.590e-5443.39TNNC2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A7S4HP37_9STRA5.330e-5340.07Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1684contigP-wetherbeei_contig1684:4118..6203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FRH9
PFAMsEF-hand_8
Model size961
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue4.68e-73
EggNOG OGs2CS8I@1|root,2RAUZ@2759|Eukaryota
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-09_000020.1
DescriptionEF-hand domain pair
Cds size771
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1684.3.1prot_P-wetherbeei_contig1684.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1684 4202..6097 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186099.2784464-UTR-P-wetherbeei_contig1684:4117..42011683186099.2784464-UTR-P-wetherbeei_contig1684:4117..4201Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1684 4118..4201 +
1683186099.345347-UTR-P-wetherbeei_contig1684:6097..62031683186099.345347-UTR-P-wetherbeei_contig1684:6097..6203Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1684 6098..6203 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186099.2878613-CDS-P-wetherbeei_contig1684:4201..43111683186099.2878613-CDS-P-wetherbeei_contig1684:4201..4311Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1684 4202..4311 +
1683186099.2961185-CDS-P-wetherbeei_contig1684:4412..46261683186099.2961185-CDS-P-wetherbeei_contig1684:4412..4626Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1684 4413..4626 +
1683186099.3044748-CDS-P-wetherbeei_contig1684:4847..49941683186099.3044748-CDS-P-wetherbeei_contig1684:4847..4994Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1684 4848..4994 +
1683186099.3128834-CDS-P-wetherbeei_contig1684:5275..53851683186099.3128834-CDS-P-wetherbeei_contig1684:5275..5385Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1684 5276..5385 +
1683186099.3220704-CDS-P-wetherbeei_contig1684:5609..56821683186099.3220704-CDS-P-wetherbeei_contig1684:5609..5682Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1684 5610..5682 +
1683186099.331243-CDS-P-wetherbeei_contig1684:5980..60971683186099.331243-CDS-P-wetherbeei_contig1684:5980..6097Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1684 5981..6097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1684.3.1

>prot_P-wetherbeei_contig1684.3.1 ID=prot_P-wetherbeei_contig1684.3.1|Name=mRNA_P-wetherbeei_contig1684.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=257bp
MTTAVVEEDAAMEITPAEAKELRRVFERLCDFSQVQSALKEIAARRDRLA
ALQRGDNTAPGSSGKPGILVLSDVQVRLEAEALTAEMKHLEEEVARLQAN
PNKRIRAIDVLENMKYLGKACGKKEVADMIWEVDEDLDGCVDWAEFRLMF
HRNINDKTGLEPSKLHNMIQFMIYDVDSSGRVSVDETMNMLYARYGRVRM
EAKLKELFGEEMRETGTQGGEINFLQYLEAVERTQLQTFLNSTAGRAQLA
KKKAAH*
back to top

mRNA from alignment at P-wetherbeei_contig1684:4118..6203+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1684.3.1 ID=mRNA_P-wetherbeei_contig1684.3.1|Name=mRNA_P-wetherbeei_contig1684.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2086bp|location=Sequence derived from alignment at P-wetherbeei_contig1684:4118..6203+ (Phaeothamnion wetherbeei SAG_119_79)
CGAACGCCACTGATTTTTTTTCCCACAAATAGCGCTGATCTTTTACCCAC GTCTCTCCCTTCTGAGCCCTTTCGAGGCAACGCGATGACTACCGCGGTGG TCGAGGAGGATGCGGCGATGGAAATCACTCCGGCCGAGGCGAAGGAGCTG CGCCGCGTCTTTGAACGCCTTTGCGACTTTAGCCAAGTGCAAAGGTAAGC CAAAACTTAAACATGGTTGTTCCTTCAACTTGTATAGCATCACAGTTCAT GCTTTTTTGGCATCTTTTTCGTCGACTTTCCTCGGCAAAACACAGTGCCC TCAAGGAGATCGCGGCGCGAAGAGATCGGCTCGCCGCGCTCCAAAGAGGA GACAATACGGCGCCCGGATCGAGCGGCAAGCCCGGCATCCTGGTGCTGAG CGACGTGCAGGTGCGGCTGGAAGCCGAGGCGCTGACGGCGGAGATGAAGC ACCTTGAGGAGGAGGTCGCGCGGCTGCAGGCCAACCCCAACAAACGGATC CGGGCCATCGTGAGTCTGCCTTCCTACTCCGAGTGACGTGCCTTTTTGCC CATTGTTTCAGTTGGGTCNNNNNNNNNNAATTCTTCACTCCAAGAGACAT TAAAGAAAGAACTGACTCTTTTTGGCGTTTCGGACGAAGGTAACCCTTCG TTTTCTTGGGTCCACCATGTGGAATGGCGGTGCAACCGACCACCGCATCA CAATTGCCATGGACACACGGGCACAACCAGGACGTGCTGGAGAACATGAA GTACCTAGGCAAGGCGTGCGGCAAGAAGGAGGTGGCGGACATGATCTGGG AGGTGGATGAGGATTTGGACGGCTGCGTCGACTGGGCCGAGTTCCGCCTC ATGTTTCACAGAAACATCAACGACAAGGTAACGGCAAGGATAACAGGGTA AGAGGGTAGGAGGGATGGGAGGGAAGAGAGGAGGCAGAGCTGGGAATCAG CATGGCTGGTTTCGTGCAATGAGGCACGGTCAACACGAAGAGGGTGGTTG CCGAAAGTGTTCCTCCTGCGCGACATGCCGAGCGTTGGTCTTCCTTCTTT TTCTCAACCCTCGGCCAGAAAACTCCCCAACCTTCTTTGCCGGCATGCCC CATGCTGCCCTGGACCAACTTATTTATGCTTTGGTTACTCTATTTTATCT CGACACAGACGGGGCTGGAGCCGTCGAAGCTGCACAACATGATACAGTTT ATGATCTACGACGTTGACAGCAGCGGCCGCGTCTCTGTCGACGAAACCAT GAACATGCTCTACGCACGGTGAGCAAGACTGGCTCAGACCGGTCCATTCT CTATGTTTTCTCTTCTTTCTGCTATTCTCTCTTTTTTCTCTTCTTTCTGC CATTCTCTCTTTTGTCTTGAGAGCCGACTGATAGGCATGTCGGAACCGCG ACGCTTTCACCTCTGATAAGTTTCAAATTGTCCTTCTGATGACGCCAGCG CTTCCATCCGCGCTTTTCTTTTTGATGCATTTCTTGTACCAGGTATGGGC GAGTGCGGATGGAGGCGAAGCTAAAGGAGCTCTTTGGAGAAGAGATGCGG GAAACGGGCACACAGGTACACAGATATGGGGACTCTTCCCGATCTGTGCT GGTTGAAATTCTGGCATTCATTGTGGGTCGTTCCCCAAGGATACGAGGCG GTCCCGTCTTTCTTAGCTTTGTGTAAGTTGGTGGCACCTGGCGAGGACAC AGGAGGTTTGATGACGCTTCTCACCTCTGTTTCCGCCTTCGTGGCTAATA TTCCTCCTCGCTGACGTGTGCTGCCAATGCTTGCGGTCCTGCACCCGTTG CCGCCGCCGTTGTCGCCGCCTGCTATCCCCAAACCCATCGGAACCGCCGG CGATGGCCAACAGGGCGGAGAGATCAATTTCCTGCAATACCTCGAAGCGG TGGAGCGGACGCAGCTGCAAACATTCCTCAACAGCACCGCTGGAAGAGCC CAACTGGCCAAGAAGAAGGCGGCCCATTAGACTCCTGGGCAATGGATCAT GCAGTAGTCGTTGTGGGCGCCGGTCCGCCGTTGTGGCCCTGTCTTCCGGT ATGTACCTTTTTTCTAGCATGGTGTAAATAAATGAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1684:4118..6203+

>mRNA_P-wetherbeei_contig1684.3.1 ID=mRNA_P-wetherbeei_contig1684.3.1|Name=mRNA_P-wetherbeei_contig1684.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=771bp|location=Sequence derived from alignment at P-wetherbeei_contig1684:4118..6203+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACTACCGCGGTGGTCGAGGAGGATGCGGCGATGGAAATCACTCCGGC
CGAGGCGAAGGAGCTGCGCCGCGTCTTTGAACGCCTTTGCGACTTTAGCC
AAGTGCAAAGTGCCCTCAAGGAGATCGCGGCGCGAAGAGATCGGCTCGCC
GCGCTCCAAAGAGGAGACAATACGGCGCCCGGATCGAGCGGCAAGCCCGG
CATCCTGGTGCTGAGCGACGTGCAGGTGCGGCTGGAAGCCGAGGCGCTGA
CGGCGGAGATGAAGCACCTTGAGGAGGAGGTCGCGCGGCTGCAGGCCAAC
CCCAACAAACGGATCCGGGCCATCGACGTGCTGGAGAACATGAAGTACCT
AGGCAAGGCGTGCGGCAAGAAGGAGGTGGCGGACATGATCTGGGAGGTGG
ATGAGGATTTGGACGGCTGCGTCGACTGGGCCGAGTTCCGCCTCATGTTT
CACAGAAACATCAACGACAAGACGGGGCTGGAGCCGTCGAAGCTGCACAA
CATGATACAGTTTATGATCTACGACGTTGACAGCAGCGGCCGCGTCTCTG
TCGACGAAACCATGAACATGCTCTACGCACGGTATGGGCGAGTGCGGATG
GAGGCGAAGCTAAAGGAGCTCTTTGGAGAAGAGATGCGGGAAACGGGCAC
ACAGGGCGGAGAGATCAATTTCCTGCAATACCTCGAAGCGGTGGAGCGGA
CGCAGCTGCAAACATTCCTCAACAGCACCGCTGGAAGAGCCCAACTGGCC
AAGAAGAAGGCGGCCCATTAG
back to top