mRNA_P-wetherbeei_contig1682.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1682.2.1
Unique NamemRNA_P-wetherbeei_contig1682.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1682.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1682contigP-wetherbeei_contig1682:4458..6064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog55529.EKX53635
PFAMsPKD_channel
Model size664
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue3.91e-08
EggNOG OGs2E9J0@1|root,2SFWN@2759|Eukaryota
DescriptionPolycystin cation channel
Cds size507
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1682.2.1prot_P-wetherbeei_contig1682.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1682 4613..6064 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186098.7279835-UTR-P-wetherbeei_contig1682:4457..46121683186098.7279835-UTR-P-wetherbeei_contig1682:4457..4612Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1682 4458..4612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186098.7383366-CDS-P-wetherbeei_contig1682:4612..46781683186098.7383366-CDS-P-wetherbeei_contig1682:4612..4678Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1682 4613..4678 +
1683186098.7490933-CDS-P-wetherbeei_contig1682:4894..52011683186098.7490933-CDS-P-wetherbeei_contig1682:4894..5201Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1682 4895..5201 +
1683186098.759065-CDS-P-wetherbeei_contig1682:5447..55031683186098.759065-CDS-P-wetherbeei_contig1682:5447..5503Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1682 5448..5503 +
1683186098.7666261-CDS-P-wetherbeei_contig1682:5645..56901683186098.7666261-CDS-P-wetherbeei_contig1682:5645..5690Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1682 5646..5690 +
1683186098.7746499-CDS-P-wetherbeei_contig1682:6031..60641683186098.7746499-CDS-P-wetherbeei_contig1682:6031..6064Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1682 6032..6064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1682.2.1

>prot_P-wetherbeei_contig1682.2.1 ID=prot_P-wetherbeei_contig1682.2.1|Name=mRNA_P-wetherbeei_contig1682.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
MSTEYGFSAVTSISTYWTWINEAVVPLSFKQYDDVGNPLDPTDWSRLATY
NSLVAGVRLRTWRAEPDGCPDEGMTPLYGQSSCYPTPGGTNSVADYGLPA
CNYSNTDVACYNETKYADIVNVTYNEGFRVDPGADHFELFLDKYDKLYAT
ELRLGYAEDRHWLDEATTD
back to top

mRNA from alignment at P-wetherbeei_contig1682:4458..6064+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1682.2.1 ID=mRNA_P-wetherbeei_contig1682.2.1|Name=mRNA_P-wetherbeei_contig1682.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1607bp|location=Sequence derived from alignment at P-wetherbeei_contig1682:4458..6064+ (Phaeothamnion wetherbeei SAG_119_79)
CACCTCTCCTTTCAAAGAGAGGGACTTGCCCGCCAGCTCTTAGCAGCATG
ACGCTAGGCACAATGGACCTGCCAACGGTCGCACAATCCTTCTCCTCCTG
CTCCCTTTCGCCTGACGCGGCCGGCGGGAGTTCCCTTGCTTAGGTAGAGA
ACACGATGTCCACTGAGTACGGCTTTAGCGCCGTCACTAGCATCTCGACT
TACTGGACGTGGATCAACGAGGTAAACTCGCCGCATCGCTGCGAGTGTCG
TGGCTGCAGGCAGGGCGGCATGCACAATCTTATTGTGTTTTTCGTATATT
GTCTATGGTAGCGTGGCGTCGTACTGACTTGCTGGTTCTCACCGCCACAC
CATTCCTGCCGCTTCCTTGGCGATGCCGCTTCCTCGGCGATGCCGCTGCC
GTCGCCGCCGCTGCTGTGCGCTGCCGCCGTCGGGCAGGCCGTGGTGCCAT
TGTCGTTCAAGCAGTACGACGACGTCGGCAACCCGCTCGATCCCACCGAC
TGGAGCCGCCTCGCCACCTACAATTCTCTCGTCGCCGGCGTCCGCCTCCG
GACGTGGCGGGCGGAGCCGGACGGCTGCCCGGACGAGGGCATGACGCCGC
TGTACGGCCAGTCGAGCTGCTACCCGACGCCGGGCGGCACCAACAGTGTG
GCGGATTACGGGCTGCCGGCGTGCAACTACAGCAACACCGACGTGGCCTG
CTACAACGAGACCAAGTACGCGGACATCGTCAACGTCACCTACAGTGAGT
CGTTTGGATTTGAGCAGGTTTGGAGGCGGGTTCTACTGGACGTTTACCTT
GATTAACCTGGACACCCCGTTCTGGCTTTGTAACGGCAGGGATTTCTCTC
CACCCATTTTTGCTGCGCAACGCTTCTCTATCATCCGTCTGTATCTGGAG
GTAACAGGTACCGTACTATCTTTGTAAAAACTTATCGTGCTTAACCTTTC
TGCCTGACCGCCTTCTCCTGCCGCATACGGTACTTAACAGATGAGGGCTT
CCGGGTCGATCCGGGCGCTGACCACTTCGAACTTTTTCTGGACAAGGTGC
GGTTTGCTGGGGCTTTCGACCGACCGAGCTCGTTTTGCTCCTTTATCTTT
CCCCAAAGATGGCTGATGCCTCTTCACATTCCAATCTTCTTCACCTGACG
TTGCCTTACCCCATCCTCCCCCGTTTCTCTGCACGCAGTATGACAAATTG
TATGCGACCGAGCTGCGACTAGGTTATGCGGAGGTAAGCAAAGCAGTAGT
GATCACAATGATTTACGATTATAAAGAGGTAGAGTGTTGCCATTGCTTGC
CGCGCCGCTGCCGCTCCCGCTGCCCCTGCTGCCATCAAGCCATATCCGCC
GCTGTCGCCGATGTTGCCGCCGTCGTCATCACCGCTTCTGCCTCCAGCGA
CGCCGCCACGACCAAAGCCATGGCTGCCGTCGCCACCACCACGGACTGGC
CATGTGCTTTTCCTCCTTGCAACCCAAACCTTTCTTCCCTCTATTTTCTG
AACGTTGCGGCTCCCTTGGGGGCCGCTTACGACCACCGTGACTATTGTAC
GGCGGTCACACGACCTCTGCACAGGACCGACACTGGCTGGATGAAGCGAC
AACCGAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1682:4458..6064+

>mRNA_P-wetherbeei_contig1682.2.1 ID=mRNA_P-wetherbeei_contig1682.2.1|Name=mRNA_P-wetherbeei_contig1682.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig1682:4458..6064+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCACTGAGTACGGCTTTAGCGCCGTCACTAGCATCTCGACTTACTG
GACGTGGATCAACGAGGCCGTGGTGCCATTGTCGTTCAAGCAGTACGACG
ACGTCGGCAACCCGCTCGATCCCACCGACTGGAGCCGCCTCGCCACCTAC
AATTCTCTCGTCGCCGGCGTCCGCCTCCGGACGTGGCGGGCGGAGCCGGA
CGGCTGCCCGGACGAGGGCATGACGCCGCTGTACGGCCAGTCGAGCTGCT
ACCCGACGCCGGGCGGCACCAACAGTGTGGCGGATTACGGGCTGCCGGCG
TGCAACTACAGCAACACCGACGTGGCCTGCTACAACGAGACCAAGTACGC
GGACATCGTCAACGTCACCTACAATGAGGGCTTCCGGGTCGATCCGGGCG
CTGACCACTTCGAACTTTTTCTGGACAAGTATGACAAATTGTATGCGACC
GAGCTGCGACTAGGTTATGCGGAGGACCGACACTGGCTGGATGAAGCGAC
AACCGAC
back to top