mRNA_P-wetherbeei_contig16809.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16809.1.1
Unique NamemRNA_P-wetherbeei_contig16809.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig16809.1.1 vs. uniprot
Match: A0A353P6K6_9BACT (Uncharacterized protein n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A353P6K6_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 2.960e-8
Identity = 35/96 (36.46%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:    1 ESGFSVRAVFEPHLIRLGAEGWH-----DEYESS-EAARDVLG-VDVLLSGQMVLREYCSNRKPYRWDLLAQTTDGQWVSRDSVGLLFFNYFGKRT 267
            + GF+++    P  I + A G H     +EY+++ E A   LG V  LLS  M +RE  +   PY+W       +G+W++ + +GL+F+NYFGKRT
Sbjct:   47 DEGFAIKIEVNPDRITVIASGAHMTLNLNEYKNADELAAQALGLVRDLLSPGMRIRERLAGGIPYKW-AFETYQNGRWLTMEWIGLIFWNYFGKRT 141
[Close]
BLAST of mRNA_P-wetherbeei_contig16809.1.1 vs. uniprot
Match: A0A7Z2PZB0_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. CCBAU 051011 TaxID=858422 RepID=A0A7Z2PZB0_9BRAD)

HSP 1 Score: 57.4 bits (137), Expect = 4.530e-8
Identity = 38/102 (37.25%), Postives = 53/102 (51.96%), Query Frame = 1 
Query:    4 SGFSVRAVFEPHLIRLGAEGWHDEYESSEAARDVLGVDV------LLSGQMVLREYCSNRKPYRWDLLAQTTDG-QWVSRDSVGLLFFNYFGKRTVRERRNT 288
            +GF +R   E   I L    WH  +E + A  D L  D+      +LS  M +RE C+   PYR  L  ++ DG  W S   + L+F+NYFGKR+VR   N+
Sbjct:   42 NGFDIRFEIERGAITLYWGNWHTRFEPT-AGVDKLIEDLFDLLRDMLSPDMRVRELCAGSNPYRGFL--ESYDGAHWASEHEMALVFWNYFGKRSVRTYSNS 140
[Close]
BLAST of mRNA_P-wetherbeei_contig16809.1.1 vs. uniprot
Match: A0A7X7YKD5_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7X7YKD5_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 1.540e-7
Identity = 35/95 (36.84%), Postives = 49/95 (51.58%), Query Frame = 1 
Query:    7 GFSVRAVFEPHLIRLGAEGWHDEYESSEA------ARDVLGVDVLLSGQMVLREYCSNRKPYRWDLLAQTTDGQWVSRDSVGLLFFNYFGKRTVR 273
            GF V    EP  I + A G H   E  E       AR +  V  LL   M +RE C+  KP++W +     +GQW + +  GL+F+NYFGK++ R
Sbjct:   55 GFPVTVEVEPEQITVYALGAHTS-EGPEGNPVDFVARTLGFVQDLLGPNMRVREVCAGGKPHKWGIEI-LQNGQWQTEEWTGLIFWNYFGKKSER 147
[Close]
BLAST of mRNA_P-wetherbeei_contig16809.1.1 vs. uniprot
Match: A0A1I1LC00_9GAMM (Uncharacterized protein n=2 Tax=Microbulbifer thermotolerans TaxID=252514 RepID=A0A1I1LC00_9GAMM)

HSP 1 Score: 49.3 bits (116), Expect = 4.040e-5
Identity = 32/99 (32.32%), Postives = 51/99 (51.52%), Query Frame = 1 
Query:    1 ESGFSVRAVFEPHLIRLGAEGWHD--------EYESSEAARDVLGVDVLLSGQMVLREYC-SNRKPYRWDLLAQTTDGQWVSRDSVGLLFFNYFGKRTV 270
            E+GF V      + +   AEGWH         + +  EA+       ++   ++   E C S  KPY+W +L  T +GQ V+ D  GL+FFN+FG+R++
Sbjct:   41 ENGFQVELECTEYGVYPSAEGWHGGCWDVTVWKPKDLEASLREFLNSIVTDAEL---EICYSGSKPYKW-ILRHTFEGQRVA-DETGLIFFNWFGRRSI 134
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16809.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A353P6K6_9BACT2.960e-836.46Uncharacterized protein n=2 Tax=Planctomycetes Tax... [more]
A0A7Z2PZB0_9BRAD4.530e-837.25Uncharacterized protein n=1 Tax=Bradyrhizobium sp.... [more]
A0A7X7YKD5_9BACT1.540e-736.84Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
A0A1I1LC00_9GAMM4.040e-532.32Uncharacterized protein n=2 Tax=Microbulbifer ther... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16809contigP-wetherbeei_contig16809:19..324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size306
Hectar predicted targeting categoryother localisation
Exons1
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186098.4739838-CDS-P-wetherbeei_contig16809:18..3241683186098.4739838-CDS-P-wetherbeei_contig16809:18..324Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16809 19..324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16809.1.1prot_P-wetherbeei_contig16809.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16809 19..324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16809.1.1

>prot_P-wetherbeei_contig16809.1.1 ID=prot_P-wetherbeei_contig16809.1.1|Name=mRNA_P-wetherbeei_contig16809.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=102bp
ESGFSVRAVFEPHLIRLGAEGWHDEYESSEAARDVLGVDVLLSGQMVLRE
YCSNRKPYRWDLLAQTTDGQWVSRDSVGLLFFNYFGKRTVRERRNTRQHR
S*
back to top

mRNA from alignment at P-wetherbeei_contig16809:19..324-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16809.1.1 ID=mRNA_P-wetherbeei_contig16809.1.1|Name=mRNA_P-wetherbeei_contig16809.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig16809:19..324- (Phaeothamnion wetherbeei SAG_119_79)
GAATCTGGATTCTCTGTGCGTGCTGTTTTCGAGCCCCATCTCATTCGTCT
CGGTGCAGAAGGCTGGCACGACGAGTATGAAAGTTCCGAGGCTGCAAGAG
ATGTATTGGGAGTTGACGTCCTGCTCTCCGGCCAAATGGTGCTGAGAGAA
TATTGCAGCAACCGCAAGCCGTATCGATGGGACTTGCTGGCTCAAACGAC
GGACGGCCAGTGGGTTTCGCGGGATTCCGTTGGGCTATTGTTCTTCAACT
ATTTTGGAAAGCGCACGGTCAGAGAGAGGCGAAATACTCGCCAGCATCGG
AGTTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig16809:19..324-

>mRNA_P-wetherbeei_contig16809.1.1 ID=mRNA_P-wetherbeei_contig16809.1.1|Name=mRNA_P-wetherbeei_contig16809.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig16809:19..324- (Phaeothamnion wetherbeei SAG_119_79)
GAATCTGGATTCTCTGTGCGTGCTGTTTTCGAGCCCCATCTCATTCGTCT
CGGTGCAGAAGGCTGGCACGACGAGTATGAAAGTTCCGAGGCTGCAAGAG
ATGTATTGGGAGTTGACGTCCTGCTCTCCGGCCAAATGGTGCTGAGAGAA
TATTGCAGCAACCGCAAGCCGTATCGATGGGACTTGCTGGCTCAAACGAC
GGACGGCCAGTGGGTTTCGCGGGATTCCGTTGGGCTATTGTTCTTCAACT
ATTTTGGAAAGCGCACGGTCAGAGAGAGGCGAAATACTCGCCAGCATCGG
AGTTGA
back to top