mRNA_P-wetherbeei_contig16801.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16801.1.1
Unique NamemRNA_P-wetherbeei_contig16801.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16801.1.1 vs. uniprot
Match: A0A835YWB7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWB7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.130e-7
Identity = 31/61 (50.82%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:  550 TLCPLGCGDELRVRD--VKAHEAKECEMRVISCPTGGCAAMFQARELPAHLAMECAAARRR 726
            T CP GCG ++  R   ++ H   EC  RV++CP  GC A+ QAR LP H A ECAAA RR
Sbjct:  171 TQCPQGCGCDVPARGPALRRHLGAECASRVVTCPELGCGALVQARSLPLHAAAECAAAARR 231
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16801.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YWB7_9STRA3.130e-750.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16801contigP-wetherbeei_contig16801:301..1029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G1R9
PFAMsLaminin_G_3,zf-TRAF
Model size730
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.68e-10
EggNOG OGs2AISC@1|root,2RZ5E@2759|Eukaryota
DescriptionTRAF-type zinc finger
Cds size729
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186098.2121613-CDS-P-wetherbeei_contig16801:300..10291683186098.2121613-CDS-P-wetherbeei_contig16801:300..1029Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16801 301..1029 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16801.1.1prot_P-wetherbeei_contig16801.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16801 301..1029 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16801.1.1

>prot_P-wetherbeei_contig16801.1.1 ID=prot_P-wetherbeei_contig16801.1.1|Name=mRNA_P-wetherbeei_contig16801.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=243bp
FPLRSDGTRVLDQRQRPRTFVEESDDLSRSGKISLWPYNLRREAKDTTTI
GAAKHQQELLRPQGPVYLPAKIRDISLSQHDASVGLSDDGQELGDSIAKL
QCFTRRDSPLRQNVAVTATTASPQQREDRPLAEAKEARQSPSRSPSHSHA
WETKEEMLARVAQSKAARKSSNSTATLLVQGDRTLCPLGCGDELRVRDVK
AHEAKECEMRVISCPTGGCAAMFQARELPAHLAMECAAARRRG
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mRNA from alignment at P-wetherbeei_contig16801:301..1029-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16801.1.1 ID=mRNA_P-wetherbeei_contig16801.1.1|Name=mRNA_P-wetherbeei_contig16801.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=729bp|location=Sequence derived from alignment at P-wetherbeei_contig16801:301..1029- (Phaeothamnion wetherbeei SAG_119_79)
TTTCCTCTAAGGAGCGATGGAACCCGCGTCCTCGACCAGCGACAGCGGCC
CCGAACGTTTGTGGAAGAAAGCGATGACCTTTCGCGCTCGGGAAAGATAT
CGTTGTGGCCATACAATCTGCGACGTGAAGCGAAAGATACCACTACAATC
GGCGCCGCCAAACACCAGCAAGAACTGCTGCGGCCGCAGGGGCCGGTTTA
CTTGCCTGCAAAGATTCGTGACATTTCGCTGTCCCAACACGATGCGAGCG
TGGGACTAAGCGACGACGGCCAAGAATTGGGCGATAGTATAGCTAAATTA
CAATGTTTTACACGAAGGGATAGCCCGCTACGCCAGAATGTTGCAGTCAC
AGCTACAACGGCATCGCCACAACAACGGGAGGACCGCCCACTAGCCGAGG
CGAAAGAAGCAAGACAATCTCCTTCGCGCAGCCCATCCCACTCGCATGCC
TGGGAAACGAAAGAAGAAATGCTGGCGAGAGTCGCTCAATCAAAGGCGGC
AAGAAAGAGCAGCAATTCGACCGCTACTCTGCTCGTTCAGGGCGACCGCA
CGCTCTGCCCTCTGGGCTGCGGCGATGAGCTGCGCGTGCGCGACGTCAAA
GCACACGAGGCAAAAGAATGCGAAATGCGCGTCATCTCCTGTCCGACGGG
CGGCTGTGCGGCGATGTTTCAGGCGCGGGAGCTGCCGGCGCATCTCGCGA
TGGAGTGCGCGGCGGCACGGCGGCGGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16801:301..1029-

>mRNA_P-wetherbeei_contig16801.1.1 ID=mRNA_P-wetherbeei_contig16801.1.1|Name=mRNA_P-wetherbeei_contig16801.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=729bp|location=Sequence derived from alignment at P-wetherbeei_contig16801:301..1029- (Phaeothamnion wetherbeei SAG_119_79)
TTTCCTCTAAGGAGCGATGGAACCCGCGTCCTCGACCAGCGACAGCGGCC
CCGAACGTTTGTGGAAGAAAGCGATGACCTTTCGCGCTCGGGAAAGATAT
CGTTGTGGCCATACAATCTGCGACGTGAAGCGAAAGATACCACTACAATC
GGCGCCGCCAAACACCAGCAAGAACTGCTGCGGCCGCAGGGGCCGGTTTA
CTTGCCTGCAAAGATTCGTGACATTTCGCTGTCCCAACACGATGCGAGCG
TGGGACTAAGCGACGACGGCCAAGAATTGGGCGATAGTATAGCTAAATTA
CAATGTTTTACACGAAGGGATAGCCCGCTACGCCAGAATGTTGCAGTCAC
AGCTACAACGGCATCGCCACAACAACGGGAGGACCGCCCACTAGCCGAGG
CGAAAGAAGCAAGACAATCTCCTTCGCGCAGCCCATCCCACTCGCATGCC
TGGGAAACGAAAGAAGAAATGCTGGCGAGAGTCGCTCAATCAAAGGCGGC
AAGAAAGAGCAGCAATTCGACCGCTACTCTGCTCGTTCAGGGCGACCGCA
CGCTCTGCCCTCTGGGCTGCGGCGATGAGCTGCGCGTGCGCGACGTCAAA
GCACACGAGGCAAAAGAATGCGAAATGCGCGTCATCTCCTGTCCGACGGG
CGGCTGTGCGGCGATGTTTCAGGCGCGGGAGCTGCCGGCGCATCTCGCGA
TGGAGTGCGCGGCGGCACGGCGGCGGGGC
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