mRNA_P-wetherbeei_contig16798.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16798.2.1
Unique NamemRNA_P-wetherbeei_contig16798.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16798.2.1 vs. uniprot
Match: UPI001E4A44B8 (hypothetical protein n=1 Tax=Leptospira sp. severe_002 TaxID=2838237 RepID=UPI001E4A44B8)

HSP 1 Score: 239 bits (611), Expect = 4.220e-78
Identity = 122/151 (80.79%), Postives = 133/151 (88.08%), Query Frame = 1
Query:    4 KSIAVWDVPMPVAIGGTFAIKVGGAKGAKVEVTYATGKVVASGALGSEPLAGTEGLYWTSLDVPSPAKAEVAQYTVRAGDATSLFSVAAAPKPEHTLTVTIVERETKEALGGVEIRLGAFHARTDKAGRAEVRIAKGDYQLKLWRNGHIAP 456
            KS+AVWDVPMPVAIG  F IKVGGAKGAKVEV+ A+GKVVASG +GSEPLAGTEGLYWTSLDVP+PAK EV +YTV A  A + F+VAAAPK EHTLTV+IVERET EAL GVEIRLGAFH RTDK GRA VR+AKG+YQLKLWRNGHIAP
Sbjct:    5 KSLAVWDVPMPVAIGENFPIKVGGAKGAKVEVSNASGKVVASGTIGSEPLAGTEGLYWTSLDVPAPAKEEVKEYTVHADGAETRFAVAAAPKAEHTLTVSIVERETSEALDGVEIRLGAFHTRTDKQGRASVRVAKGNYQLKLWRNGHIAP 155          
BLAST of mRNA_P-wetherbeei_contig16798.2.1 vs. uniprot
Match: A0A127END3_9HYPH (Uncharacterized protein n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127END3_9HYPH)

HSP 1 Score: 165 bits (418), Expect = 1.360e-48
Identity = 92/165 (55.76%), Postives = 111/165 (67.27%), Query Frame = 1
Query:    1 TKSIAVWDVPMPVAIGGTFAIKVGGAK-------GAKVEVTYATGKVVASGALGSEPLAGTEGLYWTSLDVPSPAKAEVAQYTVRAGDATSL-------FSVAAAPKPEHTLTVTIVERETKEALGGVEIRLGAFHARTDKAGRAEVRIAKGDYQLKLWRNGHIA 453
            T S+AVWDVPMPV  G  F IKVG          G +V VT A G + ASGALG  PL GTE LYWT+L+V +P + +  +Y VR     ++       FSVA APKPEH L VT+ ER++ EALG VEIRLG FHARTDK+GRAE+++ KGDYQL+LWR  HIA
Sbjct:    6 TISLAVWDVPMPVTAGEKFTIKVGAKSSSRRELDGYRVAVTDALGALAASGALGQTPLPGTEALYWTTLEVAAPTR-QANEYEVRLIPGATIDEAVATRFSVAMAPKPEHKLRVTVTERDSAEALGDVEIRLGPFHARTDKSGRAELQLCKGDYQLQLWRTAHIA 169          
BLAST of mRNA_P-wetherbeei_contig16798.2.1 vs. uniprot
Match: A0A2V8KZG0_9BACT (Uncharacterized protein n=6 Tax=unclassified Acidobacteria TaxID=305072 RepID=A0A2V8KZG0_9BACT)

HSP 1 Score: 109 bits (272), Expect = 1.290e-26
Identity = 63/156 (40.38%), Postives = 93/156 (59.62%), Query Frame = 1
Query:    7 SIAVWDVPMPVAIGGTFAIKVGG--AKGAK-----VEVTYATGKVVASGALGSEPLAGTEGLYWTSLDVPSPAKAEVAQYTVRA--GDATSLFSVAAAPKPEHTLTVTIVERETKEALGGVEIRLGAFHARTDKAGRAEVRIAKGDYQLKLWRNGH 447
            SIAVWD+  P+ IG T  +KVG   A G +     VE+  A+GK +A   LG  P  GT GLYWT ++ P+PA+A    +++ +  G A S FS  A   P+H++T+ + ++ TKE +  VEIRLG + + T+  G A V + KG Y L +W+ G+
Sbjct:   14 SIAVWDLVSPLVIGRTAKVKVGAKCAAGCQLTNHGVEIHDASGKTIARPVLGGTPWPGTSGLYWTDVEFPAPAEAGTHTFSLTSEHGGAHSEFSFIAVKPPDHSVTIQVHDKTTKETIADVEIRLGVYRSITNARGLATVDVPKGSYALTVWKLGY 169          
BLAST of mRNA_P-wetherbeei_contig16798.2.1 vs. uniprot
Match: A0A1F2S9H7_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18 TaxID=1797185 RepID=A0A1F2S9H7_9BACT)

HSP 1 Score: 97.4 bits (241), Expect = 6.680e-22
Identity = 59/169 (34.91%), Postives = 90/169 (53.25%), Query Frame = 1
Query:    7 SIAVWDVPMPVAIGGTFAIKVGGA-------KGAKVEVTYATGKVVASGALGSEPLAGTEGLYWTSLDVPSPAKAEVAQYT---------VRAGDATSLFSVAAAPKPEHTLTVTIVERETKEALGGVEIRLGAFHARTDKAGRAEVRIAKGDYQLKLWRNGH-IAPRT 462
            S+AVWD+P PV  G +F  KVG A        G  VEV    G  +  G LG  P  GT  LY   + + +PA   V  ++         V   DA++ F+   AP+P+H +T+++ ++ETK+ L  V++R+G + A TD  G A + + +G Y L  W+ G+  APR+
Sbjct:   14 SVAVWDLPSPVVAGASFTAKVGIACEVACPLAGQLVEVRDEAGARIGQGRLGETPWPGTAALYVAEVTLTAPAIEGVRSWSAVCRAPESGVPHADASATFTFRVAPRPDHRVTISVTDKETKKPLEDVDVRMGPYRASTDAGGVAHLAVPRGVYALDAWKLGYETAPRS 182          
BLAST of mRNA_P-wetherbeei_contig16798.2.1 vs. uniprot
Match: A0A2V8JNB0_9BACT (Uncharacterized protein n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8JNB0_9BACT)

HSP 1 Score: 95.9 bits (237), Expect = 2.080e-21
Identity = 57/156 (36.54%), Postives = 85/156 (54.49%), Query Frame = 1
Query:    7 SIAVWDVPMPVAIGGTFAIKVGGAKGAKVEVTY-------ATGKVVASGALGSEPLAGTEGLYWTSLDVPSPAKAEVAQYTVRA--GDATSLFSVAAAPKPEHTLTVTIVERETKEALGGVEIRLGAFHARTDKAGRAEVRIAKGDYQLKLWRNGH 447
            SIAVW++  P+ IG T  IKVG    A  ++T        A G+V+A    G+    GT GLYW  ++  +P +A    ++V    G+A S FS      PEH+LT+ I ++ TKE +  VEIRLG + + +++ G A +   KG Y L  W+ G+
Sbjct:   14 SIAVWELVSPLVIGRTTKIKVGAKCSAGCQLTDHEISIHDAAGQVIARAGFGATAWPGTSGLYWVDIEFRAPTEAGTHTFSVECEHGEAYSEFSFITVEPPEHSLTIQIYDKATKEPIPEVEIRLGVYRSISNERGLARIDAPKGSYTLTAWKLGY 169          
BLAST of mRNA_P-wetherbeei_contig16798.2.1 vs. uniprot
Match: A0A352VMU6_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A352VMU6_9BACT)

HSP 1 Score: 83.6 bits (205), Expect = 1.420e-16
Identity = 59/166 (35.54%), Postives = 78/166 (46.99%), Query Frame = 1
Query:    1 TKSIAVWDVPMPVAIGGTFAIKVG-------GAKGAKVEVTYATGKVVASGALGSEPLAGTEGLYWTSLDVPSPAKAEVAQYTV-------------RAGDATSLFSVAAAPKPEHTLTVTIVERETKEALGGVEIRLGAFHARTDKAGRAEVRIAKGDYQLKLWR 438
            T S+A+W VP P+  G  F + VG          G  VE+    G  +  G LG EP   T GLY   + + +P +  V   +V              AGD    F+      PEHT+TV +V  E    LG +E+RLG + A TD  G A V +AKG Y+L LWR
Sbjct:   16 TTSMAIWGVPTPMK-GSRFTVNVGIKCSALCPLGGQLVEIWDGEGVKLGEGRLGDEPRPDTVGLYEGEVTLTAPDRTGVFSASVGFSPDELDLPHVDTAGD----FTFRCVELPEHTVTVRVVHEEIDAPLGDIEVRLGPYQAMTDSEGVAGVAVAKGTYELSLWR 176          
BLAST of mRNA_P-wetherbeei_contig16798.2.1 vs. uniprot
Match: A0A8H9WPA6_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A8H9WPA6_9BACT)

HSP 1 Score: 83.6 bits (205), Expect = 6.770e-16
Identity = 59/166 (35.54%), Postives = 78/166 (46.99%), Query Frame = 1
Query:    1 TKSIAVWDVPMPVAIGGTFAIKVG-------GAKGAKVEVTYATGKVVASGALGSEPLAGTEGLYWTSLDVPSPAKAEVAQYTV-------------RAGDATSLFSVAAAPKPEHTLTVTIVERETKEALGGVEIRLGAFHARTDKAGRAEVRIAKGDYQLKLWR 438
            T S+A+W VP P+  G  F + VG          G  VE+    G  +  G LG EP   T GLY   + + +P +  V   +V              AGD    F+      PEHT+TV +V  E    LG +E+RLG + A TD  G A V +AKG Y+L LWR
Sbjct:  119 TTSMAIWGVPTPMK-GSRFTVNVGIKCSALCPLGGQLVEIWDGEGVKLGEGRLGDEPRPDTVGLYEGEVTLTAPDRTGVFSASVGFSPDELDLPHVDTAGD----FTFRCVELPEHTVTVRVVHEEIDAPLGDIEVRLGPYQAMTDSEGVAGVAVAKGTYELSLWR 279          
BLAST of mRNA_P-wetherbeei_contig16798.2.1 vs. uniprot
Match: A0A6L8DUZ3_9BACT (Carboxypeptidase regulatory-like domain-containing protein n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A6L8DUZ3_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 7.280e-7
Identity = 27/73 (36.99%), Postives = 43/73 (58.90%), Query Frame = 1
Query:  256 FSVAAAPKPEHTLTVTIVERETKEALGGVEIRLGAFHARTDKAGRAEVRIAKGDYQLKLWRNGHIAPRTGRSP 474
            F   A  +PEH +TVT+V+R+T+  + G E+R+G +   TD +G+A V +  G Y L + + G+  P   R P
Sbjct:  180 FGFRAVTRPEHRVTVTVVDRDTETRVAGAEVRVGVYRGTTDASGQAHVAVHPGSYDLYVRKAGY-QPHADRIP 251          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16798.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
UPI001E4A44B84.220e-7880.79hypothetical protein n=1 Tax=Leptospira sp. severe... [more]
A0A127END3_9HYPH1.360e-4855.76Uncharacterized protein n=1 Tax=Rhodoplanes sp. Z2... [more]
A0A2V8KZG0_9BACT1.290e-2640.38Uncharacterized protein n=6 Tax=unclassified Acido... [more]
A0A1F2S9H7_9BACT6.680e-2234.91Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A2V8JNB0_9BACT2.080e-2136.54Uncharacterized protein n=2 Tax=Acidobacteria bact... [more]
A0A352VMU6_9BACT1.420e-1635.54Uncharacterized protein (Fragment) n=1 Tax=Gemmati... [more]
A0A8H9WPA6_9BACT6.770e-1635.54Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A6L8DUZ3_9BACT7.280e-736.99Carboxypeptidase regulatory-like domain-containing... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16798contigP-wetherbeei_contig16798:713..1260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size548
Hectar predicted targeting categoryother localisation
Exons1
Cds size471
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186097.839839-UTR-P-wetherbeei_contig16798:712..7591683186097.839839-UTR-P-wetherbeei_contig16798:712..759Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16798 713..759 -
1683186097.8617682-UTR-P-wetherbeei_contig16798:1230..12601683186097.8617682-UTR-P-wetherbeei_contig16798:1230..1260Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16798 1231..1260 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186097.8497708-CDS-P-wetherbeei_contig16798:759..12301683186097.8497708-CDS-P-wetherbeei_contig16798:759..1230Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16798 760..1230 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16798.2.1prot_P-wetherbeei_contig16798.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16798 760..1230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16798.2.1

>prot_P-wetherbeei_contig16798.2.1 ID=prot_P-wetherbeei_contig16798.2.1|Name=mRNA_P-wetherbeei_contig16798.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
MPVAIGGTFAIKVGGAKGAKVEVTYATGKVVASGALGSEPLAGTEGLYWT
SLDVPSPAKAEVAQYTVRAGDATSLFSVAAAPKPEHTLTVTIVERETKEA
LGGVEIRLGAFHARTDKAGRAEVRIAKGDYQLKLWRNGHIAPRTGRSPST
ATRASR*
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mRNA from alignment at P-wetherbeei_contig16798:713..1260-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16798.2.1 ID=mRNA_P-wetherbeei_contig16798.2.1|Name=mRNA_P-wetherbeei_contig16798.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=548bp|location=Sequence derived from alignment at P-wetherbeei_contig16798:713..1260- (Phaeothamnion wetherbeei SAG_119_79)
ACAAAGAGTATTGCCGTTTGGGACGTGCCGATGCCGGTGGCGATCGGCGG GACGTTCGCGATCAAGGTCGGCGGCGCGAAGGGCGCCAAGGTCGAAGTGA CCTACGCGACCGGCAAGGTCGTGGCGTCGGGCGCGCTCGGCAGCGAGCCG CTGGCCGGGACCGAGGGGCTGTACTGGACGTCGCTCGATGTCCCCTCGCC CGCGAAGGCCGAGGTTGCGCAATACACGGTGCGCGCGGGCGATGCGACGT CGCTCTTCTCTGTTGCCGCGGCGCCGAAACCCGAGCACACGCTGACGGTG ACGATCGTCGAACGGGAAACGAAAGAGGCGCTCGGCGGCGTCGAGATCCG GCTCGGCGCGTTCCACGCCCGCACGGACAAGGCGGGCCGCGCCGAGGTGC GCATCGCCAAGGGCGACTATCAGCTCAAGCTCTGGCGCAACGGCCACATC GCGCCGAGAACCGGCCGGTCACCATCGACGGCGACGCGAGCCTCGCGCTG ACGATGCTGCATGTGCCGGAAGAGCACCCGGACGCGCGCTGGGTGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16798:713..1260-

>mRNA_P-wetherbeei_contig16798.2.1 ID=mRNA_P-wetherbeei_contig16798.2.1|Name=mRNA_P-wetherbeei_contig16798.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig16798:713..1260- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGTGGCGATCGGCGGGACGTTCGCGATCAAGGTCGGCGGCGCGAA
GGGCGCCAAGGTCGAAGTGACCTACGCGACCGGCAAGGTCGTGGCGTCGG
GCGCGCTCGGCAGCGAGCCGCTGGCCGGGACCGAGGGGCTGTACTGGACG
TCGCTCGATGTCCCCTCGCCCGCGAAGGCCGAGGTTGCGCAATACACGGT
GCGCGCGGGCGATGCGACGTCGCTCTTCTCTGTTGCCGCGGCGCCGAAAC
CCGAGCACACGCTGACGGTGACGATCGTCGAACGGGAAACGAAAGAGGCG
CTCGGCGGCGTCGAGATCCGGCTCGGCGCGTTCCACGCCCGCACGGACAA
GGCGGGCCGCGCCGAGGTGCGCATCGCCAAGGGCGACTATCAGCTCAAGC
TCTGGCGCAACGGCCACATCGCGCCGAGAACCGGCCGGTCACCATCGACG
GCGACGCGAGCCTCGCGCTGA
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