mRNA_P-wetherbeei_contig16781.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16781.2.1
Unique NamemRNA_P-wetherbeei_contig16781.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16781.2.1 vs. uniprot
Match: A0A7Y3M6V5_9DELT (Regulator (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y3M6V5_9DELT)

HSP 1 Score: 190 bits (482), Expect = 5.320e-60
Identity = 86/103 (83.50%), Postives = 96/103 (93.20%), Query Frame = 1
Query:   28 FNLYDHAITWLPFAGIENLELTLCDIDEERRVVDLLVRFAPNKTVTMHNHLAQTNMFIVQGELRIYEPDGSIREVRAAGHYFRGRTNDAHSEGGGPAGAVVLY 336
            F++YDH I W PFAGIENLEL+LCDIDEER+VVDL+VRFAPNKTVT+HNHLAQTNMFI+QGELR+YEPDGS+REVR AG Y+RGRTNDAHSEGGGP GAVV Y
Sbjct:   12 FDMYDHEIRWQPFAGIENLELSLCDIDEERKVVDLIVRFAPNKTVTLHNHLAQTNMFIIQGELRMYEPDGSVREVRPAGRYYRGRTNDAHSEGGGPQGAVVFY 114          
BLAST of mRNA_P-wetherbeei_contig16781.2.1 vs. uniprot
Match: A0A1Z9U9I5_9GAMM (Uncharacterized protein n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9U9I5_9GAMM)

HSP 1 Score: 155 bits (392), Expect = 8.680e-46
Identity = 73/146 (50.00%), Postives = 103/146 (70.55%), Query Frame = 1
Query:    1 IAMNAAQPSFNLYDHA-ITWLPFAGIENLELTLCDIDEERRVVDLLVRFAPNKTVTMHNHLAQTNMFIVQGELRIYEPDGSIREVRAAGHYFRGRTNDAHSEGGGPAGAVVLYSMRCDDAYNVLEIMDEQQRVLATLNMDDIRAAW 435
            +A N    S  L+D + I W  F  +EN E +L D DE R+++DL+ +F  +K +T+H H+AQTNMFIV GELRIYE DGSI+E+R AG Y  G+ +D HSEGGGP GAVV YS+R D    +L +++E++ ++AT+ +DD+RA W
Sbjct:    2 VASNLKSASNFLFDDSRIDWGAFPYVENAEFSLYDFDEXRQIIDLIFKFEADKKITIHTHIAQTNMFIVSGELRIYETDGSIKEIRQAGQYXXGKKDDTHSEGGGPDGAVVFYSLRGDGRQELLNVIEEEE-IIATIKLDDVRAMW 146          
BLAST of mRNA_P-wetherbeei_contig16781.2.1 vs. uniprot
Match: A0A520XRQ3_9ACTN (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A520XRQ3_9ACTN)

HSP 1 Score: 139 bits (350), Expect = 1.560e-39
Identity = 65/130 (50.00%), Postives = 91/130 (70.00%), Query Frame = 1
Query:   61 PFAGIENLELTLCDIDEERRVVDLLVRFAPNKTVTMHNHLAQTNMFIVQGELRIYEPDGSIREVRAAGHYFRGRTNDAHSEGGGPAGAVVLYSMRCDDAYNVLEIMDEQQRVLATLNMDDIRAAWAAQQA 450
            P   IE LE+ + D+D +R++ D + RF PN+ V MH H++QTNM I+ GEL+I+E DGSIR+ R AG Y+RG  +DAH+EGGGP GA+VLYS+R      ++EI+D++  VL  L  +D+ A  AAQ A
Sbjct:   14 PMPAIEGLEVRVLDVDLDRQIADAVFRFPPNQLVAMHRHVSQTNMMILDGELQIFEEDGSIRDRRTAGKYYRGTRDDAHTEGGGPDGAIVLYSVRGHGVAEIIEILDDKGDVLGALTFNDVAAIEAAQSA 143          
BLAST of mRNA_P-wetherbeei_contig16781.2.1 vs. uniprot
Match: A0A848V0U6_9PROT (Uncharacterized protein n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V0U6_9PROT)

HSP 1 Score: 130 bits (326), Expect = 6.020e-36
Identity = 59/130 (45.38%), Postives = 87/130 (66.92%), Query Frame = 1
Query:   40 DHAITWLPFAGIENLELTLCDIDEERRVVDLLVRFAPNKTVTMHNHLAQTNMFIVQGELRIYEPDGSIREVRAAGHYFRGRTNDAHSEGGGPAGAVVLYSMRCDDAYNVLEIMDEQQRVLATLNMDDIRA 429
            D    ++P  G+E LE+ + D+D  R++ D + RFAP+K +  H H++QTNM I+ GEL IYE DGS+R+ R AG+Y+RG+ +D+H EGGGP GA+V YS+R      ++EI+ E   VL  L   D++A
Sbjct:    5 DLTFQFIPMPGVEGLEICVLDVDLARQIADAVFRFAPDKMIANHRHVSQTNMLILSGELIIYEDDGSVRDRRTAGNYYRGKRDDSHLEGGGPDGAIVFYSVRGHGDDTIIEILGEGDIVLGKLTFADVKA 134          
BLAST of mRNA_P-wetherbeei_contig16781.2.1 vs. uniprot
Match: A0A7Y3GWD1_9DELT (Regulator n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y3GWD1_9DELT)

HSP 1 Score: 119 bits (299), Expect = 1.320e-31
Identity = 60/137 (43.80%), Postives = 80/137 (58.39%), Query Frame = 1
Query:   40 DHAITWLPFAGIENLELTLCDIDEERRVVDLLVRFAPNKTVTMHNHLAQTNMFIVQGELRIYEPDGSIREVRAAGHYFRGRTNDAHSEGGGPAGAVVLYSMRCDDAYNVL-EIMDEQQRVLATLNMDDIRAAWAAQQ 447
            D  I W      E+ +  + D DE+RRV DL  +F PNK + +H H   TN F++QGE R+YEP+G+++EVR  G Y      + H EGGG  GAVV YS+R      VL E+MD+   V ATL + D   A+A QQ
Sbjct:   15 DRNIHWFELGEFEHFKAAIFDFDEDRRVFDLAAKFEPNKQIFLHRHATLTNTFVLQGEHRLYEPNGALKEVRPCGTYTSSLPGEPHREGGGDDGAVVFYSIRAGAGDEVLFEVMDDALNVTATLTVSDFLEAFAEQQ 151          
BLAST of mRNA_P-wetherbeei_contig16781.2.1 vs. uniprot
Match: A0A545TB78_9PROT (Regulator n=1 Tax=Denitrobaculum tricleocarpae TaxID=2591009 RepID=A0A545TB78_9PROT)

HSP 1 Score: 119 bits (298), Expect = 1.570e-31
Identity = 54/138 (39.13%), Postives = 88/138 (63.77%), Query Frame = 1
Query:   40 DHAITWLPFAGIENLELTLCDIDEERRVVDLLVRFAPNKTVTMHNHLAQTNMFIVQGELRIYEPDGSIREVRAAGHYFRGRTN-DAHSEGGGPAGAVVLYSMRCDDAYNVLEIMDEQQRVLATLNMDDIRAAWAAQQA 450
            D  I W P    ++    + D+D +RR+VD ++++ P++ + MH H+ QTN  ++QGE R+YEPDG++++VR  G Y     + D H+EGGG  GA+VLYS+R D    + EI+D++  V+ TL M D+  A+  Q++
Sbjct:   16 DSNIKWFPLGDFKHFVFAVLDVDNDRRIVDAVLKYEPSQKIFMHRHIQQTNTLVLQGEHRLYEPDGTLKDVRPVGRYTATPADPDPHTEGGGAEGAIVLYSIRADGDL-LFEILDDKLEVVGTLTMQDLNGAFEMQRS 152          
BLAST of mRNA_P-wetherbeei_contig16781.2.1 vs. uniprot
Match: UPI0003B79A98 (hypothetical protein n=1 Tax=Nevskia ramosa TaxID=64002 RepID=UPI0003B79A98)

HSP 1 Score: 116 bits (290), Expect = 2.080e-30
Identity = 58/136 (42.65%), Postives = 83/136 (61.03%), Query Frame = 1
Query:   40 DHAITWLPFAGIENLELTLCDIDEERRVVDLLVRFAPNKTVTMHNHLAQTNMFIVQGELRIYEPDGSIREVRAAGHYFRGRTN-DAHSEGGGPAGAVVLYSMRCDDAYNVLEIMDEQQRVLATLNMDDIRAAWAAQ 444
            D  I W    GI +LE T+  ID  R+  D+L RFA N+ + +H HLA  + F+VQGE R+YEPDG I+E+R  G Y     N + H EGGG    +VL+S+R  D   + E++D+ + ++ TL M D+ A +AAQ
Sbjct:    8 DRQIQWSRLDGIAHLEYTVLSIDPPRQTADVLFRFAANEQIVLHRHLALNHTFVVQGEHRLYEPDGRIKEIRPTGSYTISPPNPEPHREGGGAEDVIVLFSIRGSDGL-LYELLDDARNIIGTLTMQDLTALYAAQ 142          
BLAST of mRNA_P-wetherbeei_contig16781.2.1 vs. uniprot
Match: UPI00142B1AEF (regulator n=1 Tax=Candidatus Methylobacter favarea TaxID=2707345 RepID=UPI00142B1AEF)

HSP 1 Score: 115 bits (288), Expect = 4.290e-30
Identity = 58/142 (40.85%), Postives = 85/142 (59.86%), Query Frame = 1
Query:   25 SFNLYDHAITWLPFAGIENLELTLCDIDEERRVVDLLVRFAPNKTVTMHNHLAQTNMFIVQGELRIYEPDGSIREVRAAGHYFRGR-TNDAHSEGGGPAGAVVLYSMRCDDAYNVLEIMDEQQRVLATLNMDDIRAAWAAQQ 447
            S+   D  I W    G +NL  ++ DIDE  +++D+L +FA N+ + +H HLA  N F++QGE R+YE DG+++EVR  G Y     ++D H EGGG   A+V +S+R  D     EI+D+   V+ATL M D+     AQQ
Sbjct:    3 SYLFDDCNIQWQHLEGFDNLAYSILDIDENNKIIDVLFKFAANRRIVLHRHLALNNTFVIQGEHRLYEADGALKEVRPVGRYTSSPPSDDPHREGGGDMDAIVFFSIRGSDGV-CYEILDDDLTVIATLGMQDLIGLCKAQQ 143          
BLAST of mRNA_P-wetherbeei_contig16781.2.1 vs. uniprot
Match: A0A4Q0MQQ2_9HYPH (Regulator n=1 Tax=Hansschlegelia zhihuaiae TaxID=405005 RepID=A0A4Q0MQQ2_9HYPH)

HSP 1 Score: 114 bits (286), Expect = 7.900e-30
Identity = 55/142 (38.73%), Postives = 83/142 (58.45%), Query Frame = 1
Query:   22 PSFNLYDHAITWLPFAGIENLELTLCDIDEERRVVDLLVRFAPNKTVTMHNHLAQTNMFIVQGELRIYEPDGSIREVRAAGHYFRGRTN-DAHSEGGGPAGAVVLYSMRCDDAYNVLEIMDEQQRVLATLNMDDIRAAWAAQ 444
            P F   D  ITW    G +++   +  +DEE R+VDLL RFA N+ + +H H+A    F+VQGELRIY PDG+++E+R  G Y       + H EGGG   A+V ++ R  D   + EI+D++  ++AT  + + +A   AQ
Sbjct:    2 PEFGFDDSDITWRTIEGFDHIAYCILSVDEEARIVDLLFRFAANERIALHRHMADYRTFVVQGELRIYRPDGTLKEIRPVGSYVAAAAGGEPHREGGGDRDAIVYFTNRNVDG-PIYEILDDRHDIIATFGVPEFKALLEAQ 142          
BLAST of mRNA_P-wetherbeei_contig16781.2.1 vs. uniprot
Match: A0A0Q7CW99_9BURK (Regulator n=2 Tax=Methylibium sp. Root1272 TaxID=1736441 RepID=A0A0Q7CW99_9BURK)

HSP 1 Score: 114 bits (285), Expect = 1.570e-29
Identity = 54/142 (38.03%), Postives = 85/142 (59.86%), Query Frame = 1
Query:   25 SFNLYDHAITWLPFAGIENLELTLCDIDEERRVVDLLVRFAPNKTVTMHNHLAQTNMFIVQGELRIYEPDGSIREVRAAGHYFRGRTNDA-HSEGGGPAGAVVLYSMRCDDAYNVLEIMDEQQRVLATLNMDDIRAAWAAQQ 447
            ++   D    W    G ++L  ++ +IDE R   D+L +FA N+ + +H H+A  N F++QGE R+YEPDG ++EVR  G Y     N A H EGGG    V+L+S+R +D   + E++D+ Q  +AT++M D+ A +  QQ
Sbjct:    3 AYQFDDRNTRWNTLGGFQHLAYSILNIDEARLTADVLFKFAANQKIALHRHMALNNTFVIQGEHRLYEPDGRLKEVRPVGSYTSSPANPAPHREGGGDQDVVILFSIRGNDGV-LYEVLDDDQNTIATISMQDLAALYQLQQ 143          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16781.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y3M6V5_9DELT5.320e-6083.50Regulator (Fragment) n=1 Tax=Myxococcales bacteriu... [more]
A0A1Z9U9I5_9GAMM8.680e-4650.00Uncharacterized protein n=3 Tax=Gammaproteobacteri... [more]
A0A520XRQ3_9ACTN1.560e-3950.00Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]
A0A848V0U6_9PROT6.020e-3645.38Uncharacterized protein n=1 Tax=Hellea sp. TaxID=2... [more]
A0A7Y3GWD1_9DELT1.320e-3143.80Regulator n=1 Tax=Myxococcales bacterium TaxID=202... [more]
A0A545TB78_9PROT1.570e-3139.13Regulator n=1 Tax=Denitrobaculum tricleocarpae Tax... [more]
UPI0003B79A982.080e-3042.65hypothetical protein n=1 Tax=Nevskia ramosa TaxID=... [more]
UPI00142B1AEF4.290e-3040.85regulator n=1 Tax=Candidatus Methylobacter favarea... [more]
A0A4Q0MQQ2_9HYPH7.900e-3038.73Regulator n=1 Tax=Hansschlegelia zhihuaiae TaxID=4... [more]
A0A0Q7CW99_9BURK1.570e-2938.03Regulator n=2 Tax=Methylibium sp. Root1272 TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16781contigP-wetherbeei_contig16781:906..1358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1122603.ATVI01000005_gene2899
Model size453
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.18e-31
EggNOG OGsCOG1917@1|root,COG1917@2|Bacteria,1RGY6@1224|Proteobacteria,1SQH1@1236|Gammaproteobacteria
DescriptionCupin 2, conserved barrel domain protein
Cds size447
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186097.395807-UTR-P-wetherbeei_contig16781:905..9111683186097.395807-UTR-P-wetherbeei_contig16781:905..911Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16781 906..911 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186097.4062963-CDS-P-wetherbeei_contig16781:911..13581683186097.4062963-CDS-P-wetherbeei_contig16781:911..1358Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16781 912..1358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16781.2.1prot_P-wetherbeei_contig16781.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16781 912..1358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16781.2.1

>prot_P-wetherbeei_contig16781.2.1 ID=prot_P-wetherbeei_contig16781.2.1|Name=mRNA_P-wetherbeei_contig16781.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
MNAAQPSFNLYDHAITWLPFAGIENLELTLCDIDEERRVVDLLVRFAPNK
TVTMHNHLAQTNMFIVQGELRIYEPDGSIREVRAAGHYFRGRTNDAHSEG
GGPAGAVVLYSMRCDDAYNVLEIMDEQQRVLATLNMDDIRAAWAAQQA*
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mRNA from alignment at P-wetherbeei_contig16781:906..1358+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16781.2.1 ID=mRNA_P-wetherbeei_contig16781.2.1|Name=mRNA_P-wetherbeei_contig16781.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig16781:906..1358+ (Phaeothamnion wetherbeei SAG_119_79)
ATCGCCATGAACGCAGCACAACCAAGCTTCAATCTTTACGATCATGCCAT CACCTGGTTGCCGTTCGCCGGTATCGAGAATCTCGAACTCACACTGTGCG ATATCGATGAGGAGAGGCGCGTGGTCGACCTCCTGGTGCGCTTCGCGCCG AACAAGACCGTGACCATGCACAACCATCTGGCGCAGACCAATATGTTCAT CGTGCAGGGCGAACTGCGCATCTATGAACCAGACGGCAGCATCCGTGAAG TGCGCGCGGCAGGCCACTATTTTCGCGGCCGCACCAACGATGCTCACAGC GAAGGTGGCGGCCCCGCTGGCGCGGTGGTGCTCTACAGCATGCGCTGCGA CGATGCGTATAACGTGCTTGAAATCATGGACGAGCAGCAGCGCGTGCTCG CAACCTTGAACATGGATGACATTCGCGCGGCGTGGGCAGCGCAGCAGGCT TGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16781:906..1358+

>mRNA_P-wetherbeei_contig16781.2.1 ID=mRNA_P-wetherbeei_contig16781.2.1|Name=mRNA_P-wetherbeei_contig16781.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig16781:906..1358+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACGCAGCACAACCAAGCTTCAATCTTTACGATCATGCCATCACCTG
GTTGCCGTTCGCCGGTATCGAGAATCTCGAACTCACACTGTGCGATATCG
ATGAGGAGAGGCGCGTGGTCGACCTCCTGGTGCGCTTCGCGCCGAACAAG
ACCGTGACCATGCACAACCATCTGGCGCAGACCAATATGTTCATCGTGCA
GGGCGAACTGCGCATCTATGAACCAGACGGCAGCATCCGTGAAGTGCGCG
CGGCAGGCCACTATTTTCGCGGCCGCACCAACGATGCTCACAGCGAAGGT
GGCGGCCCCGCTGGCGCGGTGGTGCTCTACAGCATGCGCTGCGACGATGC
GTATAACGTGCTTGAAATCATGGACGAGCAGCAGCGCGTGCTCGCAACCT
TGAACATGGATGACATTCGCGCGGCGTGGGCAGCGCAGCAGGCTTGA
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