mRNA_P-wetherbeei_contig1676.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1676.4.1
Unique NamemRNA_P-wetherbeei_contig1676.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1676.4.1 vs. uniprot
Match: A0A3C0TSE2_9PROT (DNA polymerase III subunit delta n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TSE2_9PROT)

HSP 1 Score: 470 bits (1209), Expect = 8.200e-163
Identity = 233/362 (64.36%), Postives = 286/362 (79.01%), Query Frame = 1
Query:   16 TSDSAGIIESDRLEGFPHPRETSTIVGHQAAMADVAGAIMSGRMHHAWLVSGPKGIGKATLAYRMARTLLKHGAGAAVPPDLAVPVDDPVFRKVMALSHPDLLLLRRPVDKTDRIQGVMPVDEVRKAFDFFSLSAGEGGWRVCIVDSADDMNIAAANALLKILEEPPKQSIFLLISHSPGRLLPTIRSRCRKLMLSSLNDRDLLQVIAAHFPELNKDELHLAAQLAEGRPGSALALARDGGLDLFREMIALLMALPQPDLAALHALGDRLSRVNAGQSYETMMEMLTAWLARMVRLGAAGAMPPDRVAGEGALMQRLLAAAPLDQWTQVWENINSLLRRADSVNLSRKQVILSIFSRLAQTA 1101
            +S    + ES RLE FPHPR  + + GH AAMA+ A A+ +GRMHHAWL+SGP+GIGKATLA+RMAR +LK+GAG+ V  DLA+  DDPVFRK+ ALSHPD LLLRRPVDK+ R+QGV+PV+E+RKA  FF+LSAGEGGWRVC++DSADDMNI+AANALLKILEEPP+ ++ LLISH+PGRLLPTIRSRCRKL L  L  + L +V+ AHFP+L+ D+  L A+L++G PG ALALA + GL ++REM  LL++LP      LH   +RL+R  A Q+YETM  +LT+WLARM+R  AAG +  D VAGE ALM+RL+ AA L+QW  VWEN  +LLRRADSVNL RKQVILSIFS LAQTA
Sbjct:   22 SSSDEELSESGRLENFPHPRRVAQLTGHDAAMAEFAAALRTGRMHHAWLLSGPQGIGKATLAFRMARAILKYGAGSGVADDLAMSPDDPVFRKITALSHPDFLLLRRPVDKSGRLQGVLPVEEIRKAASFFALSAGEGGWRVCVIDSADDMNISAANALLKILEEPPRNAMILLISHAPGRLLPTIRSRCRKLALRPLGVKALAEVVGAHFPDLSPDDFRLVARLSDGAPGRALALAHEDGLRIYREMTELLLSLPAVSAPVLHGFAERLARPAAEQNYETMTRLLTSWLARMIRDAAAGGIFEDWVAGEAALMRRLMGAATLEQWAVVWENTVNLLRRADSVNLGRKQVILSIFSSLAQTA 383          
BLAST of mRNA_P-wetherbeei_contig1676.4.1 vs. uniprot
Match: A0A353LRU7_9PROT (DNA polymerase III subunit delta n=6 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LRU7_9PROT)

HSP 1 Score: 413 bits (1062), Expect = 1.120e-140
Identity = 215/368 (58.42%), Postives = 268/368 (72.83%), Query Frame = 1
Query:    1 MAR-RPTSDSAGIIESDRLEGFPHPRETSTIVGHQAAMADVAGAIMSGRMHHAWLVSGPKGIGKATLAYRMARTLLKHGAGAAVPPDLAVPVDDPVFRKVMALSHPDLLLLRRPVD---KTDRIQGVMPVDEVRKAFDFFSLSAGEGGWRVCIVDSADDMNIAAANALLKILEEPPKQSIFLLISHSPGRLLPTIRSRCRKLMLSSLNDRDLLQVIAAHFPELNKDELHLAAQLAEGRPGSALALARDGGLDLFREMIALLMALPQPDLAALHALGDRLSRVNAGQSYETMMEMLTAWLARMVRLGAAGAMPPDRVAGEGALMQRLLAAAPLDQWTQVWENINSLLRRADSVNLSRKQVILSIFSRLA 1092
            MAR R   + A + E+DR+  FPHPRET  +VGH AA+A  A AI SGRMHHAWL++GP+GIGKATLAYR+AR +L HG G AVP DL++    P +R+V    H DLLLLRRP D   +  R +  +PVDEVR+A  FFS+SAGEGGWRVCIVDSAD++N  AANALLKILEEPP++++FLLISH+PGRLLPTIRSRCRKL +  L D ++ Q++A H P+ +   L    +L  G PG+ALALA  GG+D++RE+   L  LPQPD+ ALHALGDRLSR     +Y +++ +L  WLA M+R  A GA P      E ALMQ+L AAAPLDQW +VW+NI  L  RAD+VNL RKQVIL+IF+ LA
Sbjct:    1 MARARQIEEPADLPEADRIGDFPHPRETRHLVGHDAALACFAEAIASGRMHHAWLLTGPRGIGKATLAYRVARIVLAHGVGRAVPRDLSLDEGHPCYRRVATGGHGDLLLLRRPWDASARPARFKTAIPVDEVRRAGSFFSMSAGEGGWRVCIVDSADELNPNAANALLKILEEPPQRALFLLISHAPGRLLPTIRSRCRKLPMQPLGDSEMQQLLAQHLPDSDAATLAALTRLGRGSPGAALALADQGGVDVYRELTGFLAQLPQPDIIALHALGDRLSRREGEAAYRSLVTLLRQWLADMMRAQATGAFPEGADKAEIALMQQLGAAAPLDQWLEVWDNIGQLAARADAVNLDRKQVILNIFTSLA 368          
BLAST of mRNA_P-wetherbeei_contig1676.4.1 vs. uniprot
Match: A0A6N6VH88_9HYPH (DNA polymerase III subunit delta n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VH88_9HYPH)

HSP 1 Score: 380 bits (976), Expect = 1.010e-127
Identity = 199/364 (54.67%), Postives = 254/364 (69.78%), Query Frame = 1
Query:   34 IIESDRLEGFPHPRETSTIVGHQAAMADVAGAIMSGRMHHAWLVSGPKGIGKATLAYRMARTLLKHG----AGAAVPPDLAVPVDDPVFRKVMALSHPDLLLLRRPVD-KTDRIQGVMPVDEVRKAFDFFSLSAGEGGWRVCIVDSADDMNIAAANALLKILEEPPKQSIFLLISHSPGRLLPTIRSRCRKLMLSSLNDRDLLQVIAAHFPELNKDELHLAAQLAEGRPGSALALARDGGLDLFREMIALLMALPQPDLAALHALGDRLSRVNAGQSYETMMEMLTAWLARMVRLGAAGAMPPDRVAGEGALMQRLLAAAPLDQWTQVWENINSLLRRADSVNLSRKQVILSIFSRLAQTAQRR 1110
            I ESDRL  FPHPRE ST++G   A   V  A M GRMHHAWL++GPKGIGKATLAYR+AR LL++G    A AA   DL+VP DD VFR++ A SHP+LL++RRP D K  R++ V+PV+EVR+  +FF +SAG GGWRV IVD+ADDMN+ A NALLKILEEPP + +F+L+SH PGRLLPTIRSRCR L L  L+   +  V+AA+    N +E     +LAEG  G AL +A  GGLDL+RE++ALLM LP+ ++  +HAL D++ R  A ++YET  ++L+ WL R+VR GA      D VAGEGA M RL     LD+W +VWE IN  + RA+++N  RK VIL+ FS L   A  R
Sbjct:    4 IPESDRLGDFPHPREVSTLIGQDEAERAVFDAFMGGRMHHAWLLTGPKGIGKATLAYRIARFLLRYGEPEVARAARAHDLSVPGDDAVFRQIAAQSHPNLLVIRRPYDDKAKRLKTVIPVEEVRRTSNFFGMSAGAGGWRVAIVDAADDMNVNAENALLKILEEPPARGLFILVSHQPGRLLPTIRSRCRVLTLKPLDAPHIADVLAANETRANAEERVAIGRLAEGSAGRALTIAAGGGLDLYRELVALLMPLPRLNVKGIHALADKVGRRGADEAYETFTDLLSDWLQRLVRTGAGADATGDIVAGEGAAMARLAGGTGLDRWVEVWEKINQSVARAEALNTDRKLVILNAFSMLESVAGER 367          
BLAST of mRNA_P-wetherbeei_contig1676.4.1 vs. uniprot
Match: A0A845QCN4_9HYPH (DNA polymerase III subunit delta n=1 Tax=Pyruvatibacter mobilis TaxID=1712261 RepID=A0A845QCN4_9HYPH)

HSP 1 Score: 372 bits (954), Expect = 2.400e-124
Identity = 195/374 (52.14%), Postives = 256/374 (68.45%), Query Frame = 1
Query:    1 MARRPTSDSAGIIESDRLEGFPHPRETSTIVGHQAAMADVAGAIMSGRMHHAWLVSGPKGIGKATLAYRMARTLLKHG----AGAAVPPDLAVPVDDPVFRKVMALSHPDLLLLRRPVD-KTDRIQGVMPVDEVRKAFDFFSLSAGEGGWRVCIVDSADDMNIAAANALLKILEEPPKQSIFLLISHSPGRLLPTIRSRCRKLMLSSLNDRDLLQVIAAHFPELNKDELHLAAQLAEGRPGSALALARDGGLDLFREMIALLMALPQPDLAALHALGDRLSRVNAGQSYETMMEMLTAWLARMVRLGAAG-AMPPDRVAGEGALMQRLLAAAPLDQWTQVWENINSLLRRADSVNLSRKQVILSIFSRLAQTAQ 1104
            MAR P  +   I E D LEGFPHPRET  + GHQ A   +  A M+GR+HHAWLV+GP GIGKATLAYR AR LLK+G    A A     L VP +DPVFR++ A  H ++L LR+P D +  + + V+ VDEVR+   FF + AGEGGWR+CIVD+ADDMN  AANALLK+LEEPP Q++F+++++ PGRLLPTIRSRCR+L L+ L+   LL  +  H  ++   ++   A+LA+G  G AL LA  GGL+L+RE+  ++ +LP+PD+ A+HAL D+L+R  A QSY    E+L+ WL RMVR  A G AM  + +AGE  +M RL A APLD+W +VWEN      RAD++NL RKQVIL  F+ L   A+
Sbjct:    1 MARTP--EPVDIPEPDSLEGFPHPRETEILYGHQQAEDALRQAFMAGRLHHAWLVTGPIGIGKATLAYRFARFLLKYGDPRGAEATGVSTLHVPPEDPVFRRIAARGHANVLTLRKPWDDRAKKFKTVLTVDEVRRTSAFFGMKAGEGGWRICIVDTADDMNANAANALLKVLEEPPAQTVFMVLANHPGRLLPTIRSRCRQLPLTPLSHDQLLSAVHGHLGDMADGDMEAIARLAQGSVGRALLLAGGGGLELYRELFTVMSSLPRPDVPAIHALADKLARRGADQSYAMFRELLSDWLVRMVRQAAGGPAMTDEVIAGEADVMNRLAAGAPLDRWVEVWENTARNAERADALNLDRKQVILGTFAALETAAR 372          
BLAST of mRNA_P-wetherbeei_contig1676.4.1 vs. uniprot
Match: A0A2Z4UHS4_9HYPH (DNA polymerase III subunit tau n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2Z4UHS4_9HYPH)

HSP 1 Score: 358 bits (919), Expect = 4.470e-119
Identity = 184/361 (50.97%), Postives = 248/361 (68.70%), Query Frame = 1
Query:   34 IIESDRLEGFPHPRETSTIVGHQAAMADVAGAIMSGRMHHAWLVSGPKGIGKATLAYRMARTLLKHG----AGAAVPPDLAVPVDDPVFRKVMALSHPDLLLLRRPVD-KTDRIQGVMPVDEVRKAFDFFSLSAGEGGWRVCIVDSADDMNIAAANALLKILEEPPKQSIFLLISHSPGRLLPTIRSRCRKLMLSSLNDRDLLQVIAAHFPELNKDELHLAAQLAEGRPGSALALARDGGLDLFREMIALLMALPQPDLAALHALGDRLSRVNAGQSYETMMEMLTAWLARMVRLGAAGAMPPDRVAGEGALMQRLLAAAPLDQWTQVWENINSLLRRADSVNLSRKQVILSIFSRLAQTA 1101
            + E DRL  F HPRET+ + GH  A   +  A MSGRMHHAWL++GPKGIGK TLAYRMA+ +L +     A A    +L+V  D P  R+++A  HPDLL++RRPVD KT + + V+PVD+VRK   FF  SAG GGWRVCIVDSAD+MN  +ANALLK+LEEPP +S+FLL+SH PGRLLPTIRSRCR+L + +L+   + QV+ A+  +L+ D++     LAEG  G AL +A   GL+L+R M+ L+  LP+PD+AA+HAL D+ +R  A Q+++ +++++  W+AR VR GA G   PD V GE   M  L+    LD+W +VWE I  L  RA+++N+ RK VIL+ FS L   A
Sbjct:    4 LPEPDRLGDFKHPRETNVLYGHSHAEEALFDAFMSGRMHHAWLLTGPKGIGKTTLAYRMAKFVLTYSDAEKARAMGAENLSVSEDMPAARQILAQGHPDLLVIRRPVDEKTKKAKSVIPVDQVRKTSGFFGKSAGAGGWRVCIVDSADEMNANSANALLKVLEEPPAKSLFLLVSHQPGRLLPTIRSRCRQLPMPALSSSAMDQVLGANGADLSADDIAAIDVLAEGSAGRALTIASGDGLELYRSMVGLICQLPRPDIAAMHALADKAARRGAEQTFDILVDLMRDWVARAVRQGAGGPANPDIVPGEATAMAMLVHGQNLDRWVEVWEKIGELATRAEALNMDRKLVILNAFSMLEAAA 364          
BLAST of mRNA_P-wetherbeei_contig1676.4.1 vs. uniprot
Match: A0A2A4SAV0_9HYPH (DNA polymerase III subunit delta n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A4SAV0_9HYPH)

HSP 1 Score: 356 bits (913), Expect = 3.740e-118
Identity = 181/363 (49.86%), Postives = 253/363 (69.70%), Query Frame = 1
Query:   34 IIESDRLEGFPHPRETSTIVGHQAAMADVAGAIMSGRMHHAWLVSGPKGIGKATLAYRMARTLLKHG----AGAAVPPDLAVPVDDPVFRKVMALSHPDLLLLRRPVD-KTDRIQGVMPVDEVRKAFDFFSLSAGEGGWRVCIVDSADDMNIAAANALLKILEEPPKQSIFLLISHSPGRLLPTIRSRCRKLMLSSLNDRDLLQVIAAHFPELNKDELHLAAQLAEGRPGSALALARDGGLDLFREMIALLMALPQPDLAALHALGDRLSRVNAGQSYETMMEMLTAWLARMVRLGAA-GAMPPDRVAGEGALMQRLLAAAPLDQWTQVWENINSLLRRADSVNLSRKQVILSIFSRLAQTAQ 1104
            + E+DR    P PRET  ++G + A + +  A M GRMHHAWL++GPKG+GKATLAY++ R +LK+G    A A     L VP DDPV R++++LSHPDLLLLRRP D KT +++ V+PVDEVR+   FF  S+G GGWRVC+VDSAD+MN  AANALLK+LEEPP +++F+L+SH PGRLLPTIRSRCR+L +  L    +  ++A H   L   +  L A+LAEG  G AL++++ GGL+L++ M+ ++ +LP+ D+ ALH L D   R  A   + T+M++LT W+AR++R+GA  GA+    + GE  ++      APLD+W QVWE IN L+ RA++VN+ RK VIL+ FS L +T +
Sbjct:    4 LPEADREGELPSPRETFELIGQETAQSTLFDAFMGGRMHHAWLLTGPKGVGKATLAYQLTRFVLKYGDRDTASAFNATSLFVPEDDPVSRQLVSLSHPDLLLLRRPADPKTKKLKSVIPVDEVRRTTKFFGQSSGAGGWRVCLVDSADEMNANAANALLKVLEEPPARALFILLSHQPGRLLPTIRSRCRQLPVPPLKGEAVNAILAKHGVTLEGTQAALIAELAEGSAGRALSISQGGGLELYQSMVQVISSLPRLDVPALHKLADIAGRRGANDKFATLMDLLTDWIARLIRVGAQKGAVQAVGLPGEAEMILEFARIAPLDRWVQVWEKINDLVGRAEAVNMDRKLVILNAFSLLERTVR 366          
BLAST of mRNA_P-wetherbeei_contig1676.4.1 vs. uniprot
Match: A0A2D4VN81_9HYPH (DNA polymerase III subunit delta n=2 Tax=Parvibaculum TaxID=256616 RepID=A0A2D4VN81_9HYPH)

HSP 1 Score: 353 bits (906), Expect = 4.020e-117
Identity = 187/359 (52.09%), Postives = 249/359 (69.36%), Query Frame = 1
Query:   40 ESDRLEGFPHPRETSTIVGHQAAMADVAGAIMSGRMHHAWLVSGPKGIGKATLAYRMARTLLKHG----AGAAVPPDLAVPVDDPVFRKVMALSHPDLLLLRRPVD-KTDRIQGVMPVDEVRKAFDFFSLSAGEGGWRVCIVDSADDMNIAAANALLKILEEPPKQSIFLLISHSPGRLLPTIRSRCRKLMLSSLNDRDLLQVIAAHFPELNKDELHLAAQLAEGRPGSALALARDGGLDLFREMIALLMALPQPDLAALHALGDRLSRVNAGQSYETMMEMLTAWLARMVRLGAAGAMPPDRVAGEGALMQRLLAAAPLDQWTQVWENINSLLRRADSVNLSRKQVILSIFSRLAQTA 1101
            ESDRL  FPHPRET+ ++G   A   +  A MSGRMHHAWL++GPKGIGKATLA+RMA+ +L++G    A AA    L +  DDPVFR+ +A S  DLL++RRP D K+ R++ ++PV+EVR+   FF +SAG GGWRV I+DSAD+MN  AANALLK+LEEPP  S+FL+ISH PGRLLPTIRSRCR L L  L+   + +V+AA+  E   D+    A+LAEG  G AL+L+  GGLDL++ +  +LM LP+ D+ A+H LGD++ R  A  +Y   +E+LT WL R++R G+      D V GEGA M RL   + LD+W +VWE I+  + RA+++N  RK VIL+IFS L   A
Sbjct:    6 ESDRLGDFPHPRETAGLIGQDEAEQVLFDAFMSGRMHHAWLLTGPKGIGKATLAHRMAKFVLRYGSPEAARAAGATGLYLREDDPVFRQGLAQSLSDLLVIRRPYDDKSKRLKTIIPVEEVRRTAGFFGMSAGAGGWRVTIIDSADEMNANAANALLKVLEEPPANSLFLVISHQPGRLLPTIRSRCRTLPLKPLSHDAIAEVLAANEAEAAPDDREAIARLAEGSAGRALSLSAGGGLDLYKRVTNILMGLPKLDVEAVHELGDKVGRRGAEDAYFATVELLTDWLQRLIRAGSGLDTGADIVVGEGAAMARLAKGSRLDRWVEVWEKISQTVARAEALNTDRKLVILTIFSMLENAA 364          
BLAST of mRNA_P-wetherbeei_contig1676.4.1 vs. uniprot
Match: A7HXT6_PARL1 (ATPase involved in DNA replication n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) TaxID=402881 RepID=A7HXT6_PARL1)

HSP 1 Score: 346 bits (888), Expect = 3.720e-114
Identity = 195/379 (51.45%), Postives = 248/379 (65.44%), Query Frame = 1
Query:   34 IIESDRLEGFPHPRETSTIVGHQAAMADVAGAIMSGRMHHAWLVSGPKGIGKATLAYRMARTLLKHG----AGAAVPPDLAVPVDDPVFRKVMALSHPDLLLLRRPVD-KTDRIQGVMPVDEVRKAFDFFSLSAGE-GGWRVCIVDSADDMNIAAANALLKILEEPPKQSIFLLISHSPGRLLPTIRSRCRKLMLSSLNDRDLLQVIA-------AHFPELNKD-------ELHLAAQLAEGRPGSALALARDGGLDLFREMIALLMALPQPDLAALHALGDRLSRVNAGQSYETMMEMLTAWLARMVRLGAAGAMPPDRVAGEGALMQRLLAAAPLDQWTQVWENINSLLRRADSVNLSRKQVILSIFSRLAQTAQRR 1110
            I ESDRL  FPHPRE + +VG +AA   +  A MSGRMHHAWL++GPKGIGKATLAYRMAR  L +G    A AA   DL +  D+ VF +V A SHP+LL +RRP D KT +++ V+PVDEVR+   FF L+A E G WRV I+DSAD+MN  +ANALLK LEEPP   +FL++SH PG+LLPTIRSRCR L ++ L + D++ ++        A   E  +        E    AQLAEG  G AL++A  GGL L++E+  LL  LP+ D+AA+HA  D+  R  A  +YETM+E+LT WL R+VR GA     PD VAGEGA M RL A   LD+W +VWE IN    R +++N  RK VIL++FS L   A  R
Sbjct:    6 IPESDRLGDFPHPREAAALVGQEAAERALFEAFMSGRMHHAWLLTGPKGIGKATLAYRMARFALHYGTAEAARAAGARDLNISPDEGVFHQVAAGSHPNLLTVRRPWDDKTKKLKTVIPVDEVRRIGHFFGLTATERGAWRVVIIDSADEMNANSANALLKALEEPPPNGLFLVLSHQPGQLLPTIRSRCRTLRMTPLAEGDIVSMMEPAERQAEARAKEAKRKFAMTPAAERQPIAQLAEGSAGRALSIAAGGGLGLYKELAGLLAGLPRLDIAAVHAFADKAGRKGADDAYETMIELLTHWLQRLVRTGAGLHPGPDIVAGEGAAMARLAAGGSLDRWVEVWEKINQSTARGEALNTDRKLVILNVFSMLEAAASER 384          
BLAST of mRNA_P-wetherbeei_contig1676.4.1 vs. uniprot
Match: UPI00115D38BC (DNA polymerase III subunit delta' n=1 Tax=Telmatospirillum sp. J64-1 TaxID=2502183 RepID=UPI00115D38BC)

HSP 1 Score: 345 bits (885), Expect = 4.800e-114
Identity = 182/358 (50.84%), Postives = 245/358 (68.44%), Query Frame = 1
Query:   61 FPHPRETSTIVGHQAAMADVAGAIMSGRMHHAWLVSGPKGIGKATLAYRMARTLLKHGA--------GAAVPPDLAVPVDDPVFRKVMALSHPDLLLLRR--PVDKTDRIQGVMPVDEVRKAFDFFSLSAGEGGWRVCIVDSADDMNIAAANALLKILEEPPKQSIFLLISHSPGRLLPTIRSRCRKLMLSSLNDRDLLQVIAAHFPELNKDELHLAAQLAEGRPGSALALARDGGLDLFREMIALLMALPQPDLAALHALGDRLSRVNAGQSYETMMEMLTAWLARMVRLGAAGAMPPDRVAGEGALMQRLLAAAPLDQWTQVWENINSLLRRADSVNLSRKQVILSIFSRLAQTAQ 1104
             P PRET  ++GH AA   +  A  SGRM HAWL+ GP+GIGKATLAYR AR +L  GA        G AVPP L +  D PVFR+V A  H DL ++ R    DK  R +G + V++VR    F SL+A EGGWRV I+D+AD+MN ++ANA+LK+LEEPP+ ++ LL++HSPGRLLPTIRSRCR+LML  L++  +L+++  + P+L+ D+    A+L EG  G ALALA +GGLDL+R+M+ LL  LP+ D+ ALHA GDR+SR  A Q++ T+ E+   WLAR++R G A     + V GE  + +RLL+AA LDQW +VWE   SL  RAD+VNL RKQV+L+ F  + + A+
Sbjct:    5 IPLPRETPLLLGHAAAERALVDAWSSGRMAHAWLICGPRGIGKATLAYRFARFVLSGGAAEQGGGLFGDAVPPGLDMAADHPVFRRVAAGGHADLKVVERGWSDDKQTRRRGEIVVEDVRGVGAFLSLTAAEGGWRVVIIDAADEMNRSSANAVLKVLEEPPRNALLLLVAHSPGRLLPTIRSRCRRLMLQPLSETTVLELLRRNRPDLSDDDARALARLGEGSVGRALALAGEGGLDLYRDMVGLLQGLPRLDIPALHAFGDRVSRSGADQAWRTVTELFGWWLARVIRTGGARQSIAEVVPGEAEVAERLLSAASLDQWVEVWEKNTSLFARADAVNLDRKQVVLNAFQTVERLAR 362          
BLAST of mRNA_P-wetherbeei_contig1676.4.1 vs. uniprot
Match: A0A2N3EMG4_9PROT (DNA polymerase III subunit delta n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12 TaxID=2013658 RepID=A0A2N3EMG4_9PROT)

HSP 1 Score: 344 bits (883), Expect = 2.120e-113
Identity = 191/379 (50.40%), Postives = 247/379 (65.17%), Query Frame = 1
Query:   34 IIESDRLEGFPHPRETSTIVGHQAAMADVAGAIMSGRMHHAWLVSGPKGIGKATLAYRMARTLLKHG----AGAAVPPDLAVPVDDPVFRKVMALSHPDLLLLRRPVD-KTDRIQGVMPVDEVRKAFDFFSLSAGE-GGWRVCIVDSADDMNIAAANALLKILEEPPKQSIFLLISHSPGRLLPTIRSRCRKLMLSSLNDRDLLQVIAA--------------HFPELNKDELHLAAQLAEGRPGSALALARDGGLDLFREMIALLMALPQPDLAALHALGDRLSRVNAGQSYETMMEMLTAWLARMVRLGAAGAMPPDRVAGEGALMQRLLAAAPLDQWTQVWENINSLLRRADSVNLSRKQVILSIFSRLAQTAQRR 1110
            I ESDRL  FPHPRE + ++G  AA  D+  A MSGRM HAWL++GPKGIGKATLAYRMAR +L++G    A  A   DL++  D  VF +V A SHP+LL +RRP D KT +++ V+PVDE+R+   FF L+A E G WR+ I+DSAD+MN  AANALLK LEEPP   +FL++SH PGRLLPTIRSRCR L ++ LN+ D++ ++                 F      E    AQLAEG  G AL++A  GGL L+R++  LL  LP+ D+AA+HA  D+  R  A  +YETM+E+LT WL R+VR GA     PD V GEGA M+ L +A  LD+W +VWE I+    R +++N  RK VIL+IFS L   A  R
Sbjct:    6 IPESDRLGAFPHPREATDLIGQDAAERDLFDAFMSGRMQHAWLLTGPKGIGKATLAYRMARFVLEYGTPEAARLAGARDLSLAEDTSVFHRVAANSHPNLLAVRRPYDDKTKKLKTVIPVDEIRRIGHFFELTATERGAWRIVIIDSADEMNPNAANALLKALEEPPPNGLFLVLSHQPGRLLPTIRSRCRTLRMTPLNEADIVAMMGTAEQAAEARVKNTRGKFTPTAISEHAPIAQLAEGSAGRALSIAAGGGLALYRDLSTLLTGLPRLDIAAVHAFADKAGRKGADDTYETMIELLTHWLQRLVRAGAGLDPGPDIVVGEGAAMRGLASAGSLDRWVEVWEKISQSTARGEALNTDRKLVILNIFSMLEAVAGER 384          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1676.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TSE2_9PROT8.200e-16364.36DNA polymerase III subunit delta n=1 Tax=Alphaprot... [more]
A0A353LRU7_9PROT1.120e-14058.42DNA polymerase III subunit delta n=6 Tax=Alphaprot... [more]
A0A6N6VH88_9HYPH1.010e-12754.67DNA polymerase III subunit delta n=1 Tax=Parvibacu... [more]
A0A845QCN4_9HYPH2.400e-12452.14DNA polymerase III subunit delta n=1 Tax=Pyruvatib... [more]
A0A2Z4UHS4_9HYPH4.470e-11950.97DNA polymerase III subunit tau n=2 Tax=Hyphomicrob... [more]
A0A2A4SAV0_9HYPH3.740e-11849.86DNA polymerase III subunit delta n=1 Tax=Rhodobiac... [more]
A0A2D4VN81_9HYPH4.020e-11752.09DNA polymerase III subunit delta n=2 Tax=Parvibacu... [more]
A7HXT6_PARL13.720e-11451.45ATPase involved in DNA replication n=1 Tax=Parviba... [more]
UPI00115D38BC4.800e-11450.84DNA polymerase III subunit delta' n=1 Tax=Telmatos... [more]
A0A2N3EMG4_9PROT2.120e-11350.40DNA polymerase III subunit delta n=1 Tax=Alphaprot... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1676contigP-wetherbeei_contig1676:4164..5276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1282876.BAOK01000001_gene2131
Preferred nameholB
PFAMsDNA_pol3_delta2
Model size1113
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC02795
KEGG koko:K02341
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440
KEGG ModuleM00260
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.65e-120
EggNOG OGsCOG0470@1|root,COG0470@2|Bacteria,1MY1W@1224|Proteobacteria,2TV3E@28211|Alphaproteobacteria,4BQBV@82117|unclassified Alphaproteobacteria
EC2.7.7.7
DescriptionDNA polymerase III, delta subunit
Cds size1113
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186096.6669028-CDS-P-wetherbeei_contig1676:4163..52761683186096.6669028-CDS-P-wetherbeei_contig1676:4163..5276Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1676 4164..5276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1676.4.1prot_P-wetherbeei_contig1676.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1676 4164..5276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1676.4.1

>prot_P-wetherbeei_contig1676.4.1 ID=prot_P-wetherbeei_contig1676.4.1|Name=mRNA_P-wetherbeei_contig1676.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=371bp
MARRPTSDSAGIIESDRLEGFPHPRETSTIVGHQAAMADVAGAIMSGRMH
HAWLVSGPKGIGKATLAYRMARTLLKHGAGAAVPPDLAVPVDDPVFRKVM
ALSHPDLLLLRRPVDKTDRIQGVMPVDEVRKAFDFFSLSAGEGGWRVCIV
DSADDMNIAAANALLKILEEPPKQSIFLLISHSPGRLLPTIRSRCRKLML
SSLNDRDLLQVIAAHFPELNKDELHLAAQLAEGRPGSALALARDGGLDLF
REMIALLMALPQPDLAALHALGDRLSRVNAGQSYETMMEMLTAWLARMVR
LGAAGAMPPDRVAGEGALMQRLLAAAPLDQWTQVWENINSLLRRADSVNL
SRKQVILSIFSRLAQTAQRR*
back to top

mRNA from alignment at P-wetherbeei_contig1676:4164..5276-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1676.4.1 ID=mRNA_P-wetherbeei_contig1676.4.1|Name=mRNA_P-wetherbeei_contig1676.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1113bp|location=Sequence derived from alignment at P-wetherbeei_contig1676:4164..5276- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCAGACGCCCCACCAGCGATAGCGCCGGCATCATCGAGTCTGATCG GCTGGAAGGATTTCCGCATCCACGCGAAACATCCACTATTGTGGGCCATC AGGCGGCAATGGCGGATGTGGCCGGCGCCATCATGTCTGGCCGCATGCAT CATGCCTGGCTTGTGTCCGGCCCCAAGGGTATTGGCAAAGCCACGCTGGC CTACCGCATGGCGCGCACTTTGCTGAAACATGGCGCGGGGGCAGCGGTTC CACCGGATCTGGCGGTGCCAGTTGATGACCCGGTGTTTCGCAAGGTCATG GCGTTATCGCATCCCGACCTGCTGTTGTTGCGACGCCCCGTAGATAAGAC GGATCGCATTCAGGGTGTCATGCCGGTGGATGAAGTGCGCAAGGCGTTTG ATTTCTTTTCCCTGAGTGCGGGTGAAGGCGGCTGGCGCGTATGCATTGTG GATAGTGCGGATGATATGAACATCGCCGCAGCCAACGCCTTGCTGAAAAT ACTTGAAGAACCACCGAAGCAGTCCATATTTTTGCTGATCAGTCATTCGC CGGGGCGGTTGTTGCCAACCATCCGGTCGCGTTGCCGTAAGCTAATGCTC AGTTCGCTGAATGATCGTGATCTGTTGCAGGTTATTGCCGCGCATTTTCC GGAATTGAACAAGGATGAATTGCACCTTGCAGCACAGCTTGCGGAGGGGC GCCCCGGCAGTGCACTGGCGCTGGCACGCGACGGCGGGCTGGATCTTTTC CGGGAAATGATCGCGCTGTTAATGGCGCTGCCACAACCTGATCTGGCGGC GCTGCATGCGCTGGGGGACCGCCTGTCCCGGGTCAATGCCGGGCAAAGCT ACGAAACCATGATGGAAATGCTGACCGCATGGCTGGCGCGGATGGTGCGT CTGGGCGCGGCCGGCGCCATGCCGCCCGATCGCGTGGCGGGCGAGGGGGC GTTGATGCAGCGTTTGCTGGCTGCGGCCCCCCTTGATCAATGGACGCAGG TATGGGAAAACATCAACAGTCTTTTGCGGCGCGCGGATAGCGTAAATCTC AGCCGCAAACAGGTGATTTTGAGCATTTTTTCACGACTGGCCCAAACGGC GCAACGCCGTTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1676:4164..5276-

>mRNA_P-wetherbeei_contig1676.4.1 ID=mRNA_P-wetherbeei_contig1676.4.1|Name=mRNA_P-wetherbeei_contig1676.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1113bp|location=Sequence derived from alignment at P-wetherbeei_contig1676:4164..5276- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCAGACGCCCCACCAGCGATAGCGCCGGCATCATCGAGTCTGATCG
GCTGGAAGGATTTCCGCATCCACGCGAAACATCCACTATTGTGGGCCATC
AGGCGGCAATGGCGGATGTGGCCGGCGCCATCATGTCTGGCCGCATGCAT
CATGCCTGGCTTGTGTCCGGCCCCAAGGGTATTGGCAAAGCCACGCTGGC
CTACCGCATGGCGCGCACTTTGCTGAAACATGGCGCGGGGGCAGCGGTTC
CACCGGATCTGGCGGTGCCAGTTGATGACCCGGTGTTTCGCAAGGTCATG
GCGTTATCGCATCCCGACCTGCTGTTGTTGCGACGCCCCGTAGATAAGAC
GGATCGCATTCAGGGTGTCATGCCGGTGGATGAAGTGCGCAAGGCGTTTG
ATTTCTTTTCCCTGAGTGCGGGTGAAGGCGGCTGGCGCGTATGCATTGTG
GATAGTGCGGATGATATGAACATCGCCGCAGCCAACGCCTTGCTGAAAAT
ACTTGAAGAACCACCGAAGCAGTCCATATTTTTGCTGATCAGTCATTCGC
CGGGGCGGTTGTTGCCAACCATCCGGTCGCGTTGCCGTAAGCTAATGCTC
AGTTCGCTGAATGATCGTGATCTGTTGCAGGTTATTGCCGCGCATTTTCC
GGAATTGAACAAGGATGAATTGCACCTTGCAGCACAGCTTGCGGAGGGGC
GCCCCGGCAGTGCACTGGCGCTGGCACGCGACGGCGGGCTGGATCTTTTC
CGGGAAATGATCGCGCTGTTAATGGCGCTGCCACAACCTGATCTGGCGGC
GCTGCATGCGCTGGGGGACCGCCTGTCCCGGGTCAATGCCGGGCAAAGCT
ACGAAACCATGATGGAAATGCTGACCGCATGGCTGGCGCGGATGGTGCGT
CTGGGCGCGGCCGGCGCCATGCCGCCCGATCGCGTGGCGGGCGAGGGGGC
GTTGATGCAGCGTTTGCTGGCTGCGGCCCCCCTTGATCAATGGACGCAGG
TATGGGAAAACATCAACAGTCTTTTGCGGCGCGCGGATAGCGTAAATCTC
AGCCGCAAACAGGTGATTTTGAGCATTTTTTCACGACTGGCCCAAACGGC
GCAACGCCGTTAG
back to top