mRNA_P-wetherbeei_contig1675.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1675.2.1
Unique NamemRNA_P-wetherbeei_contig1675.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1675.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1675contigP-wetherbeei_contig1675:1758..2911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size737
Hectar predicted targeting categoryother localisation
Exons2
Cds size648
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186096.2788389-CDS-P-wetherbeei_contig1675:1757..23571683186096.2788389-CDS-P-wetherbeei_contig1675:1757..2357Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1675 1758..2357 -
1683186096.287443-CDS-P-wetherbeei_contig1675:2776..28241683186096.287443-CDS-P-wetherbeei_contig1675:2776..2824Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1675 2777..2824 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186096.2949295-UTR-P-wetherbeei_contig1675:2824..29111683186096.2949295-UTR-P-wetherbeei_contig1675:2824..2911Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1675 2825..2911 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1675.2.1prot_P-wetherbeei_contig1675.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1675 1758..2824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1675.2.1

>prot_P-wetherbeei_contig1675.2.1 ID=prot_P-wetherbeei_contig1675.2.1|Name=mRNA_P-wetherbeei_contig1675.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=216bp
MASPARGRGRRPVRGRVAAQAAAEATQKNDASAAVFSGAAASCAFANHET
CLAAAQAVVRQLDDHLTAVTAQRDDALNQAAWLRLTLDAIWEIGGISQDE
NVGTRNMLASTTQDLQKAENMVAEVSRRHGRELGALRADHSRQQLQAMGE
VAEAKAEIRFLNSALIGLAAESDGSLERAATAIEPLHATLAAAHAYLARQ
RGLLDDASGRKGAATA
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mRNA from alignment at P-wetherbeei_contig1675:1758..2911-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1675.2.1 ID=mRNA_P-wetherbeei_contig1675.2.1|Name=mRNA_P-wetherbeei_contig1675.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1154bp|location=Sequence derived from alignment at P-wetherbeei_contig1675:1758..2911- (Phaeothamnion wetherbeei SAG_119_79)
CGCAGAGATTTTACCCGCTATAAGTCCATTCCGAGGAAGCACAAGCTTTC
TATGTTGCAGTAATTGTGTCTCCCAGGACAGGTCATAATGGCGTCTCCAG
CAAGAGGTCGTGGAAGAAGACCAGTCAGAGGAAGAGTAAGTTTGTTGTAA
AGGCGAATGTTAGCAGATTGATTATAGAAGACAGAGAGAGAAGTGAGCTT
TTGTTCACTGGCTGGCTCTGCTCCCTTCTCCAGTTTTCACCGATTGTCGC
AAATAGAAACTATCACGCCGAGACTTGCGCTGACTTCCTTGCTTCTTCAA
GTACTGGTTTGATACACACATGGACCGTTTTGGACCGCCATCGCTCTCAT
CGGGCTTTTGACGAGGGATAGATAACCAATGCATGCAGCCTTCCTTTGCC
CTTTGCACTTCCCGCGCGCACCTCTGGGCTAGACAACAAGTTACGTTTAA
GTACGTCTCTTGCTTGCTGGAGGAAACTGAAAGCGTGATGCTACGCATCG
GCGGTCTTTTCTCACATTACCCGGCCGTTAACGGGTAACTTAATGTTCTT
ACAGGTCGCGGCTCAGGCGGCGGCCGAGGCGACGCAGAAAAACGACGCTT
CCGCCGCTGTCTTCAGCGGCGCCGCCGCCAGCTGCGCGTTTGCGAATCAC
GAGACGTGCCTGGCGGCCGCACAAGCAGTGGTCAGGCAGCTTGACGACCA
TCTTACCGCGGTCACTGCACAACGTGACGACGCTTTGAACCAGGCGGCCT
GGCTGCGCCTTACGCTGGACGCCATCTGGGAAATAGGGGGCATATCCCAG
GACGAAAATGTTGGAACGCGCAACATGCTCGCCTCAACGACTCAAGATCT
GCAAAAGGCCGAGAATATGGTGGCGGAAGTTTCCAGGCGACACGGCCGGG
AGCTGGGCGCTTTGAGGGCGGATCATTCTCGGCAGCAGCTGCAGGCGATG
GGAGAGGTGGCGGAGGCCAAAGCCGAGATTCGCTTCCTAAATTCCGCGCT
AATCGGCTTGGCTGCGGAGTCAGACGGGAGTTTGGAGAGGGCCGCCACTG
CGATCGAGCCCCTGCACGCTACTCTCGCCGCAGCACATGCCTACCTTGCG
AGGCAGCGGGGCCTTTTGGACGACGCCAGCGGGCGCAAGGGTGCCGCGAC
TGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1675:1758..2911-

>mRNA_P-wetherbeei_contig1675.2.1 ID=mRNA_P-wetherbeei_contig1675.2.1|Name=mRNA_P-wetherbeei_contig1675.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=648bp|location=Sequence derived from alignment at P-wetherbeei_contig1675:1758..2911- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTCTCCAGCAAGAGGTCGTGGAAGAAGACCAGTCAGAGGAAGAGT
CGCGGCTCAGGCGGCGGCCGAGGCGACGCAGAAAAACGACGCTTCCGCCG
CTGTCTTCAGCGGCGCCGCCGCCAGCTGCGCGTTTGCGAATCACGAGACG
TGCCTGGCGGCCGCACAAGCAGTGGTCAGGCAGCTTGACGACCATCTTAC
CGCGGTCACTGCACAACGTGACGACGCTTTGAACCAGGCGGCCTGGCTGC
GCCTTACGCTGGACGCCATCTGGGAAATAGGGGGCATATCCCAGGACGAA
AATGTTGGAACGCGCAACATGCTCGCCTCAACGACTCAAGATCTGCAAAA
GGCCGAGAATATGGTGGCGGAAGTTTCCAGGCGACACGGCCGGGAGCTGG
GCGCTTTGAGGGCGGATCATTCTCGGCAGCAGCTGCAGGCGATGGGAGAG
GTGGCGGAGGCCAAAGCCGAGATTCGCTTCCTAAATTCCGCGCTAATCGG
CTTGGCTGCGGAGTCAGACGGGAGTTTGGAGAGGGCCGCCACTGCGATCG
AGCCCCTGCACGCTACTCTCGCCGCAGCACATGCCTACCTTGCGAGGCAG
CGGGGCCTTTTGGACGACGCCAGCGGGCGCAAGGGTGCCGCGACTGCC
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