mRNA_P-wetherbeei_contig1675.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1675.1.1
Unique NamemRNA_P-wetherbeei_contig1675.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1675.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1675contigP-wetherbeei_contig1675:2..1708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1490
Hectar predicted targeting categorymitochondrion
Exons2
Cds size765
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186096.2032962-UTR-P-wetherbeei_contig1675:1..4841683186096.2032962-UTR-P-wetherbeei_contig1675:1..484Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1675 2..484 -
1683186096.2451937-UTR-P-wetherbeei_contig1675:1466..17081683186096.2451937-UTR-P-wetherbeei_contig1675:1466..1708Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1675 1467..1708 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186096.2167363-CDS-P-wetherbeei_contig1675:484..12281683186096.2167363-CDS-P-wetherbeei_contig1675:484..1228Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1675 485..1228 -
1683186096.2343066-CDS-P-wetherbeei_contig1675:1445..14661683186096.2343066-CDS-P-wetherbeei_contig1675:1445..1466Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1675 1446..1466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1675.1.1prot_P-wetherbeei_contig1675.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1675 485..1466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1675.1.1

>prot_P-wetherbeei_contig1675.1.1 ID=prot_P-wetherbeei_contig1675.1.1|Name=mRNA_P-wetherbeei_contig1675.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=255bp
MAASTNLVTPGRGRLPGLLPLPVRLPLPRSPSSLHAGASEPTSPVERWSA
GGSGSGGRRSSDGSLGASGGSGGSGDSSTGNDTGSGEHRDSSRTRPARAS
RATKRGRIPDPLAMALQADCVKEEEDGEADARLLRSVRARITPPTSLGQD
AFGSFAWPSLPTPPPPPPLSPPLRAALQVMAFRAVVRTPPSALTQMTAPG
AAASPPLALQPPLLVLPLPTTAHAGAAQLFPASGVPVQSFPLFSGTSHTA
GAKA*
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mRNA from alignment at P-wetherbeei_contig1675:2..1708-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1675.1.1 ID=mRNA_P-wetherbeei_contig1675.1.1|Name=mRNA_P-wetherbeei_contig1675.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1707bp|location=Sequence derived from alignment at P-wetherbeei_contig1675:2..1708- (Phaeothamnion wetherbeei SAG_119_79)
CGGCGGGGGCGGATGCGGTGGCTACAGCGGCGAAAGTGGCAGGCATAGTG
AGGCGGCTGCGGGCCGAGCTGACCGCGTCGGAAGAGGAGCGGGATGCGGG
CGTCGAAACGGTGAAGCGGCTTGCAGCGGAACTGGCGAAAGCGCGGACAG
CTCTGGGGGAGGCTGCAAGTCAAGCAGGTGTGCCGGAGGCGCCCTCACCG
GGAGCGGTGTCAGCGCCAAGAGCGCCAGCTTTGGCAGCAAAGATGGCCGC
TTCGACCAATTTGGTGAGTGAAGCGCTAAGCGAAGACCGATCGGTCCTCG
TTGTTTGGTGGTGTGCACACGTCGGTTGAAGAAATGATTCCGTATTTTCT
ATTCGCGTATTGTGGAACCCTTTCTTCTCTTTGGAAATGAAAATCTTGTC
TCACGAAGTCTCGATGTTGCCTCGCACTTTCTTCCCGGGTGGCGGGAGCG
GGGCGGCGGGTGCATGTCACGACCCTAAAGGTCACGCCGGGACGGGGCCG
TCTGCCGGGGCTGCTTCCGCTGCCAGTGCGGTTGCCGCTACCGCGGTCGC
CGTCATCGCTCCATGCTGGCGCATCCGAGCCGACATCGCCTGTTGAAAGA
TGGAGCGCCGGGGGCAGCGGCAGTGGCGGCCGCCGCTCCTCTGATGGAAG
TCTTGGCGCCAGCGGCGGCAGCGGCGGCAGCGGCGACAGCAGCACCGGCA
ACGACACTGGGAGCGGCGAGCACAGGGACTCCAGTCGAACTCGGCCGGCA
AGGGCGTCACGCGCGACCAAGCGCGGGCGCATTCCGGACCCTCTCGCAAT
GGCGTTGCAGGCTGACTGTGTGAAGGAGGAAGAAGACGGGGAAGCCGACG
CCCGCCTTCTGCGGAGCGTTCGGGCGCGCATCACCCCTCCTACCTCGTTG
GGGCAGGATGCATTCGGCAGCTTCGCTTGGCCGTCGCTGCCGACGCCGCC
ACCACCGCCGCCGCTGTCGCCGCCACTGCGGGCGGCGCTGCAAGTCATGG
CTTTCCGCGCCGTAGTGCGGACGCCGCCGTCAGCATTGACGCAAATGACG
GCTCCAGGCGCCGCAGCATCACCGCCTCTGGCGCTGCAGCCCCCGCTGTT
GGTGCTGCCGCTGCCCACGACGGCGCATGCTGGCGCGGCACAGCTGTTCC
CGGCTTCTGGAGTTCCCGTACAAAGCTTTCCCTTGTTCAGTGGGACCTCG
CACACCGCAGGCGCCAAAGCGTAGCATGCTAGCAGCCCCAGCGCCGCTGA
TGTCCTGGGGCGGATTCCCGTGCATTGGTTGCTGCTCTTGGCATCGCCGG
CACGCCCGCCTGCCATCAAAGCGGCATTCTTCGAAGGATGAAGCGGCTGC
TGCGAAATTTGGCGAGGGAAAGGCCATAGATTTTTCTGCAACCAAAACGG
AAAAAGGGAAGGACTAGGGAAAAGCATCAGCGAGGGGGCTGCTGTGTTTG
CATCGATTGTTCACAATCACTATGGGAGGTGAAGTTTCTGCTGTTTGATT
TTATGCCGGCGAAGGCGGCGGCGGCGGCGGTAGTGGCGGTGACGGCGGTG
GTGGTGGCATGCTCGATAGGAGCAGAGACGGCGGCGGCGGTCTCGAGGAG
GATACAGGAAAATTAGCTATGGTATTATAGCGGCAGCGGCGTCTCGAGAA
CAGTATAGGAAAGCTAGTCATAGTATTATAGTAGCGGCGGCGGCGGTCTC
GGGGAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1675:2..1708-

>mRNA_P-wetherbeei_contig1675.1.1 ID=mRNA_P-wetherbeei_contig1675.1.1|Name=mRNA_P-wetherbeei_contig1675.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=765bp|location=Sequence derived from alignment at P-wetherbeei_contig1675:2..1708- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGCTTCGACCAATTTGGTCACGCCGGGACGGGGCCGTCTGCCGGG
GCTGCTTCCGCTGCCAGTGCGGTTGCCGCTACCGCGGTCGCCGTCATCGC
TCCATGCTGGCGCATCCGAGCCGACATCGCCTGTTGAAAGATGGAGCGCC
GGGGGCAGCGGCAGTGGCGGCCGCCGCTCCTCTGATGGAAGTCTTGGCGC
CAGCGGCGGCAGCGGCGGCAGCGGCGACAGCAGCACCGGCAACGACACTG
GGAGCGGCGAGCACAGGGACTCCAGTCGAACTCGGCCGGCAAGGGCGTCA
CGCGCGACCAAGCGCGGGCGCATTCCGGACCCTCTCGCAATGGCGTTGCA
GGCTGACTGTGTGAAGGAGGAAGAAGACGGGGAAGCCGACGCCCGCCTTC
TGCGGAGCGTTCGGGCGCGCATCACCCCTCCTACCTCGTTGGGGCAGGAT
GCATTCGGCAGCTTCGCTTGGCCGTCGCTGCCGACGCCGCCACCACCGCC
GCCGCTGTCGCCGCCACTGCGGGCGGCGCTGCAAGTCATGGCTTTCCGCG
CCGTAGTGCGGACGCCGCCGTCAGCATTGACGCAAATGACGGCTCCAGGC
GCCGCAGCATCACCGCCTCTGGCGCTGCAGCCCCCGCTGTTGGTGCTGCC
GCTGCCCACGACGGCGCATGCTGGCGCGGCACAGCTGTTCCCGGCTTCTG
GAGTTCCCGTACAAAGCTTTCCCTTGTTCAGTGGGACCTCGCACACCGCA
GGCGCCAAAGCGTAG
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