mRNA_P-wetherbeei_contig16746.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16746.1.1
Unique NamemRNA_P-wetherbeei_contig16746.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16746.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16746contigP-wetherbeei_contig16746:2..1489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1221
Hectar predicted targeting categoryother localisation
Exons2
Cds size864
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186096.0787723-UTR-P-wetherbeei_contig16746:1..3381683186096.0787723-UTR-P-wetherbeei_contig16746:1..338Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16746 2..338 +
1683186096.1109486-UTR-P-wetherbeei_contig16746:1469..14891683186096.1109486-UTR-P-wetherbeei_contig16746:1469..1489Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16746 1470..1489 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186096.089538-CDS-P-wetherbeei_contig16746:338..4251683186096.089538-CDS-P-wetherbeei_contig16746:338..425Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16746 339..425 +
1683186096.102298-CDS-P-wetherbeei_contig16746:692..14691683186096.102298-CDS-P-wetherbeei_contig16746:692..1469Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16746 693..1469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16746.1.1prot_P-wetherbeei_contig16746.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16746 339..1469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16746.1.1

>prot_P-wetherbeei_contig16746.1.1 ID=prot_P-wetherbeei_contig16746.1.1|Name=mRNA_P-wetherbeei_contig16746.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=288bp
MHALGKGGQWRRAVALLDEMRVNGLMPNHVAFTAAIGACSAAGRWREGLD
LLALMKAEGCSPTLMTFGTCIASCARAGESGAAIALLAEMRAAGLQPDVV
AFGAALHACARAATEDGVGVGGASGGSRVGGEEGEDDDDERGKGSGGKSE
REMAAGAAEATFAVATAAGSAAWDGHGASLPPGVFGVAPVMRASQRTSAA
VAAAAATALLEDMRAHDLRPNVVCWTNAIAAFGKAGDKGAVDGAVRAMAA
DGVVPDTRSLNAALAACERNGWWPEALALLRSGGTVM*
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mRNA from alignment at P-wetherbeei_contig16746:2..1489+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16746.1.1 ID=mRNA_P-wetherbeei_contig16746.1.1|Name=mRNA_P-wetherbeei_contig16746.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1488bp|location=Sequence derived from alignment at P-wetherbeei_contig16746:2..1489+ (Phaeothamnion wetherbeei SAG_119_79)
GGAAGATGCGGTGGACCTCCTCGATCGCATGTGGTGAGTTCTGCAATGCA
ATGGCTGCAACGCCGGCATTTTCTCCGCTGGCGGCAGTGGCGGCGGTGGT
GGTGGCAGCAGTAATGGCGGGCGCCGAAAACATGCTACGGGCCCTGTGGT
CGGCGACTGATGCCTTTTCCTTCTCGCTTTCGCCCGGGTGCGGACCGTGA
AAGCATTGCCATCCATTCATACGCGCTCTTTTTCAACGCTTCTTGGCGGA
TTCCGACGCCGCCGCCAAACTTCGAACCCGGAAAACCGCTGCAGGGACGA
GGCGTACGGTGCAGACGTGGCGAGCTACACGTGCGCGATGCACGCCCTCG
GCAAGGGCGGGCAGTGGCGGCGGGCCGTGGCGCTCCTCGACGAGATGCGC
GTCAACGGCCTAATGCCCAACCACGTGAGCCGATCGCTCGCTCATGCGGC
TTGTCTTTTTGGGGGGAGAGGGGACCACCATTTCCTGCTTTTTGAAGCGA
AAAAGTTCTCTGAGTGCTCTCGTTCTCTTCCCTTTGGTACGTTTGCTGGC
AAAAGTATAGGTGGGAAGGCCTTCTGCAAACCGTTGCATTGTGGGCCATC
TCGGCTGACGTCTTCGTCCCTCCCGTTTCGTTCGCTTCTCTCGTCCAAAA
AACTTATTTTGTCATAACACGCCACTGCATCCCGTCCTCAGGTGGCCTTC
ACGGCGGCTATCGGCGCCTGCTCCGCCGCCGGCCGCTGGCGCGAAGGCCT
CGACCTGCTGGCGCTCATGAAGGCGGAGGGTTGCTCGCCGACCCTCATGA
CCTTCGGCACGTGCATCGCCTCATGCGCCCGCGCTGGAGAGTCGGGAGCC
GCCATCGCGCTGCTGGCGGAAATGCGGGCGGCGGGGCTGCAGCCAGACGT
CGTGGCGTTCGGCGCGGCGCTCCACGCGTGCGCGCGCGCCGCTACGGAGG
ACGGTGTCGGCGTCGGCGGTGCCAGCGGCGGCAGCAGGGTTGGCGGCGAA
GAAGGAGAAGACGATGACGACGAAAGAGGGAAGGGTAGCGGCGGAAAGAG
TGAGCGCGAAATGGCGGCGGGCGCTGCGGAGGCGACCTTTGCGGTGGCGA
CGGCAGCGGGCAGTGCGGCATGGGACGGTCACGGTGCATCGCTGCCACCT
GGCGTCTTTGGCGTGGCGCCTGTGATGCGTGCATCGCAGCGGACTTCGGC
GGCGGTCGCTGCCGCCGCCGCGACGGCGCTGCTCGAAGACATGCGCGCGC
ACGACCTCAGACCGAACGTGGTCTGCTGGACGAATGCGATCGCGGCCTTT
GGCAAGGCCGGCGACAAAGGCGCCGTCGACGGCGCTGTGCGGGCGATGGC
TGCGGACGGCGTCGTCCCGGACACGCGCTCTCTGAATGCGGCACTGGCGG
CGTGCGAGCGGAACGGCTGGTGGCCGGAGGCGCTGGCACTGCTGCGGTCC
GGCGGAACCGTGATGTAGGGCGGAGAGGCCGAAGCTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16746:2..1489+

>mRNA_P-wetherbeei_contig16746.1.1 ID=mRNA_P-wetherbeei_contig16746.1.1|Name=mRNA_P-wetherbeei_contig16746.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=864bp|location=Sequence derived from alignment at P-wetherbeei_contig16746:2..1489+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCACGCCCTCGGCAAGGGCGGGCAGTGGCGGCGGGCCGTGGCGCTCCT
CGACGAGATGCGCGTCAACGGCCTAATGCCCAACCACGTGGCCTTCACGG
CGGCTATCGGCGCCTGCTCCGCCGCCGGCCGCTGGCGCGAAGGCCTCGAC
CTGCTGGCGCTCATGAAGGCGGAGGGTTGCTCGCCGACCCTCATGACCTT
CGGCACGTGCATCGCCTCATGCGCCCGCGCTGGAGAGTCGGGAGCCGCCA
TCGCGCTGCTGGCGGAAATGCGGGCGGCGGGGCTGCAGCCAGACGTCGTG
GCGTTCGGCGCGGCGCTCCACGCGTGCGCGCGCGCCGCTACGGAGGACGG
TGTCGGCGTCGGCGGTGCCAGCGGCGGCAGCAGGGTTGGCGGCGAAGAAG
GAGAAGACGATGACGACGAAAGAGGGAAGGGTAGCGGCGGAAAGAGTGAG
CGCGAAATGGCGGCGGGCGCTGCGGAGGCGACCTTTGCGGTGGCGACGGC
AGCGGGCAGTGCGGCATGGGACGGTCACGGTGCATCGCTGCCACCTGGCG
TCTTTGGCGTGGCGCCTGTGATGCGTGCATCGCAGCGGACTTCGGCGGCG
GTCGCTGCCGCCGCCGCGACGGCGCTGCTCGAAGACATGCGCGCGCACGA
CCTCAGACCGAACGTGGTCTGCTGGACGAATGCGATCGCGGCCTTTGGCA
AGGCCGGCGACAAAGGCGCCGTCGACGGCGCTGTGCGGGCGATGGCTGCG
GACGGCGTCGTCCCGGACACGCGCTCTCTGAATGCGGCACTGGCGGCGTG
CGAGCGGAACGGCTGGTGGCCGGAGGCGCTGGCACTGCTGCGGTCCGGCG
GAACCGTGATGTAG
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