mRNA_P-wetherbeei_contig16725.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16725.2.1
Unique NamemRNA_P-wetherbeei_contig16725.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16725.2.1 vs. uniprot
Match: A0A835YSN6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSN6_9STRA)

HSP 1 Score: 196 bits (498), Expect = 8.740e-60
Identity = 97/144 (67.36%), Postives = 112/144 (77.78%), Query Frame = 1
Query:   73 KVAVSTEPKCYIDTGICAVTFQKDKVRQASLYVFPSGIVFGLFWLGALYEIIEPFINLNPIFILALAAPPTYVTSKWFTENVFLRDDPLVTSGPCPSCGFKNRVFFGTIVGVEGFTEEATVKCSNCKEEIVIRRRDLRARTLPK 504
            KVAVSTEPKCYIDTGIC VTFQ+DK R+A+LYV P GI   LF LGALYE++EP  ++NP+  L LA  PTY  +K+FT+NVF  +DP +  GPCPSCG  N VFFG ++GVEG  EEA  KCSNCKEEI IRRRDLRART PK
Sbjct:  142 KVAVSTEPKCYIDTGICTVTFQEDKFREATLYV-PVGIPTLLFSLGALYELLEPLRSVNPLVTLVLATLPTYFFTKFFTDNVFATNDPKIAYGPCPSCGASNHVFFGNVLGVEGPGEEANFKCSNCKEEITIRRRDLRARTSPK 284          
BLAST of mRNA_P-wetherbeei_contig16725.2.1 vs. uniprot
Match: A0A835Z693_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z693_9STRA)

HSP 1 Score: 189 bits (480), Expect = 1.330e-56
Identity = 96/169 (56.80%), Postives = 117/169 (69.23%), Query Frame = 1
Query:    1 LQGAPIMTDAEFDVLKQSLRETGSKVAVSTEPKCYIDTGICAVTFQKDKVRQASLYVFPSGIVFGLFWLGALYEIIEPFINLNPIFILALAAPPTYVTSKWFTENVFLRDDPLVTSGPCPSCGFKNRVFFGTIVGVEGFTEEATVKCSNCKEEIVIRRRDLRARTLPKV 507
            L+G P +T          LR+ GSKVAVSTEPKCYIDTGIC VTFQ+DK R+A+LY  P GI   LF LGALYE+ EP  ++NP+  L LA  PT+  +K FT++VF+ ++  V  GPCPSCG  N VFFG ++GV G  + A  KCS CKE+I IRRRDLRART P V
Sbjct:  156 LKGEPFLTXXXXXXXXXXLRDAGSKVAVSTEPKCYIDTGICTVTFQEDKFRRATLYT-PVGIPTLLFTLGALYEVFEPLRSVNPLVTLILATIPTWAFTKAFTDSVFITNEAKVAYGPCPSCGATNHVFFGNVLGVVGPGDTAEFKCSKCKEQITIRRRDLRARTAPSV 323          
BLAST of mRNA_P-wetherbeei_contig16725.2.1 vs. uniprot
Match: A0A7S3QAK1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QAK1_9STRA)

HSP 1 Score: 173 bits (439), Expect = 1.830e-50
Identity = 84/166 (50.60%), Postives = 113/166 (68.07%), Query Frame = 1
Query:    7 GAPIMTDAEFDVLKQSLRETGSKVAVSTEPKCYIDTGICAVTFQKDKVRQASLYVFPSGIVFGLFWLGALYEIIEPFINLNPIFILALAAPPTYVTSKWFTENVFLRDDPLVTSGPCPSCGFKNRVFFGTIVGVEGFTEEATVKCSNCKEEIVIRRRDLRARTLPK 504
            G P+M+D EFD LK  L+E  SK AV+TEPKCYID+GIC VT  +DK R   LY+ P+G+   + WLG  +EIIEPFI +NPI ++AL  P  +  SK  TE+     + +V  GPCPSC  +NR++FG I+ VEGF + AT+KC +CK +  ++R  LRA T+PK
Sbjct:  158 GTPMMSDVEFDALKTELKEEKSKFAVTTEPKCYIDSGICTVTMDEDKFRNNLLYL-PAGVALFIGWLGIGFEIIEPFIRVNPILLIALGTPGIFAGSKIITEDYLFPKNKIVY-GPCPSCEAENRIYFGDILTVEGFDDVATIKCPSCKVQFSVQRESLRASTVPK 321          
BLAST of mRNA_P-wetherbeei_contig16725.2.1 vs. uniprot
Match: A0A7S0SSR4_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SSR4_9STRA)

HSP 1 Score: 168 bits (425), Expect = 3.040e-48
Identity = 78/166 (46.99%), Postives = 117/166 (70.48%), Query Frame = 1
Query:    4 QGAPIMTDAEFDVLKQSLRETGSKVAVSTEPKCYIDTGICAVTFQKDKVRQASLYVFPSGIVFGLFWLGALYEIIEPF-INLNPIFILALAAPPTYVTSKWFTENVFLRDDPLVTSGPCPSCGFKNRVFFGTIVGVEGFTEEATVKCSNCKEEIVIRRRDLRARTL 498
            +G P++TD++FD LK  L+ET SK+AVS EPKCY+DTG+C VT++KD +R  SL  FP+  +  L +LG  YE++    ++ NP+ +L   + P Y++S   T+ +F +D PLV +G CP+CG +N+VFFG ++G+EG  EE++VKC+NCK  + I+R  LR  TL
Sbjct:  153 KGTPVLTDSQFDELKSYLKETNSKLAVSNEPKCYVDTGVCKVTWEKDVIRTLSLS-FPAVAIVTLLYLGIFYELLALIDVSANPLLLLLAGSYPIYLSSDKITKEIFFKD-PLVAAGKCPNCGVENKVFFGGVLGIEGDVEESSVKCTNCKTNLTIKRSSLRVSTL 316          
BLAST of mRNA_P-wetherbeei_contig16725.2.1 vs. uniprot
Match: D7FM52_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM52_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 9.740e-47
Identity = 82/144 (56.94%), Postives = 104/144 (72.22%), Query Frame = 1
Query:   76 VAVSTEPKCYIDTGICAVTFQKDKVRQASLYVFPSGIVFGLFWLGALYEIIEPFINLNPIFILALAAPPTYVTSKWFTENVFLRDDPLVTSGPCPSCGFKNRVFFGTIVGVEGFTEEATVKCSNCKEEIVIRRRDLRARTLPKV 507
            VAVSTEPKCYIDTGIC VTFQ+D  R+ + Y+ P+  +FGL +LGA ++IIEP   LNP+  L L   PT   SK FT+    +D+  V SGPCPSCG +NRVFFG+++GV+G  +++  KC NC E I IRR DLRARTLPK+
Sbjct:  205 VAVSTEPKCYIDTGICTVTFQEDLFRRFATYL-PANFIFGLAFLGASWQIIEPIRYLNPLATLLLLTAPTIAASKKFTDLCLYQDNGTVASGPCPSCGAQNRVFFGSMLGVKGNIDDSEFKCDNCGEIIKIRRADLRARTLPKL 347          
BLAST of mRNA_P-wetherbeei_contig16725.2.1 vs. uniprot
Match: A0A448Z6R2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z6R2_9STRA)

HSP 1 Score: 158 bits (399), Expect = 2.130e-44
Identity = 75/144 (52.08%), Postives = 98/144 (68.06%), Query Frame = 1
Query:   73 KVAVSTEPKCYIDTGICAVTFQKDKVRQASLYVFPSGIVFGLFWLGALYEIIEPFINLNPIFILALAAPPTYVTSKWFTENVFLRDDPLVTSGPCPSCGFKNRVFFGTIVGVEGFTEEATVKCSNCKEEIVIRRRDLRARTLPK 504
            K AV TEPKCYID+G+C VT Q+DK R   LY+ P+G+   + WLG  +E+IEPFI +NPI + AL  P     SK  TE +   D  L+  GPCPSC ++NR++FG I+GVEGF +E +VKC NCK    ++R+ LRA TLPK
Sbjct:  187 KFAVDTEPKCYIDSGVCKVTLQEDKFRSNLLYL-PAGLTLSVVWLGLAFELIEPFIRVNPIILFALGLPLIVDGSKKITEELIFTDK-LIAYGPCPSCEYENRIYFGDILGVEGFGDEGSVKCPNCKTVFTVQRKTLRASTLPK 328          
BLAST of mRNA_P-wetherbeei_contig16725.2.1 vs. uniprot
Match: A0A8J9WZ54_PHATR (Hypothetical protein n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9WZ54_PHATR)

HSP 1 Score: 149 bits (377), Expect = 2.090e-42
Identity = 71/144 (49.31%), Postives = 97/144 (67.36%), Query Frame = 1
Query:   73 KVAVSTEPKCYIDTGICAVTFQKDKVRQASLYVFPSGIVFGLFWLGALYEIIEPFINLNPIFILALAAPPTYVTSKWFTENVFLRDDPLVTSGPCPSCGFKNRVFFGTIVGVEGFTEEATVKCSNCKEEIVIRRRDLRARTLPK 504
            K AV TEPKCYIDTGIC VT Q+DK R   LY+ P+ I+  + W+G  +E++EPFI +NP+ +  +  P  Y+ ++  TE  F+ ++  +  GPCPSC  +NRV+FG I+GVEGFT+ A  KC NCK    ++R  LRA TLPK
Sbjct:   71 KFAVQTEPKCYIDTGICKVTLQEDKFRSNLLYL-PATIIGVVAWIGFGFEVLEPFIRINPVVLTLMGTPLIYLGARTLTEE-FIFENKFLAYGPCPSCQAENRVYFGNILGVEGFTDVANAKCPNCKTTFTVQRNTLRASTLPK 212          
BLAST of mRNA_P-wetherbeei_contig16725.2.1 vs. uniprot
Match: A0A7S4N636_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N636_9STRA)

HSP 1 Score: 152 bits (385), Expect = 3.390e-42
Identity = 76/143 (53.15%), Postives = 98/143 (68.53%), Query Frame = 1
Query:   76 VAVSTEPKCYIDTGICAVTFQKDKVRQASLYVFPSGIVFGLFWLGALYEIIEPFINLNPIFILALAAPPTYVTSKWFTENVFLRDDPLVTSGPCPSCGFKNRVFFGTIVGVEGFTEEATVKCSNCKEEIVIRRRDLRARTLPK 504
            +AVST+PKCYID+GIC VTFQKD  R   LY+ P G +F + WLG  +E IEP I LNPI +L L A P Y  S  FT+  F+  +  +  GPCPSC  +NRV+FG I+GVEG+ E A +KC NCK  I ++++ LRA +LPK
Sbjct:  198 IAVSTDPKCYIDSGICRVTFQKDNFRNNLLYL-PLGAIFTVVWLGLGFEFIEPLIRLNPIVLLGLGAYPIYKYSIEFTDK-FIFPNNSIAYGPCPSCEAENRVYFGDILGVEGYNEVAEIKCKNCKAVIEVQQKTLRASSLPK 338          
BLAST of mRNA_P-wetherbeei_contig16725.2.1 vs. uniprot
Match: A0A1E7FKP9_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKP9_9STRA)

HSP 1 Score: 148 bits (374), Expect = 3.930e-41
Identity = 74/144 (51.39%), Postives = 94/144 (65.28%), Query Frame = 1
Query:   73 KVAVSTEPKCYIDTGICAVTFQKDKVRQASLYVFPSGIVFGLFWLGALYEIIEPFINLNPIFILALAAPPTYVTSKWFTENVFLRDDPLVTSGPCPSCGFKNRVFFGTIVGVEGFTEEATVKCSNCKEEIVIRRRDLRARTLPK 504
            K AV T+PKCYIDTG+C VT QKDK R   LY+ P+G +  + WL   +EIIEP I LNPI + AL  P     +   TE+ +L  + LV  GPCPSC ++NR++FG ++GVEGF  E  VKC NCK    ++R  LRA TLPK
Sbjct:  143 KFAVDTDPKCYIDTGVCKVTLQKDKFRSNLLYL-PAGAILSIVWLALGFEIIEPIIRLNPIILFALGTPLITKGATVITED-YLFVNNLVAYGPCPSCEYENRLYFGDMLGVEGFGAEGNVKCPNCKTVFTVQRESLRASTLPK 284          
BLAST of mRNA_P-wetherbeei_contig16725.2.1 vs. uniprot
Match: B7FRN6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FRN6_PHATC)

HSP 1 Score: 149 bits (376), Expect = 5.490e-41
Identity = 70/144 (48.61%), Postives = 97/144 (67.36%), Query Frame = 1
Query:   73 KVAVSTEPKCYIDTGICAVTFQKDKVRQASLYVFPSGIVFGLFWLGALYEIIEPFINLNPIFILALAAPPTYVTSKWFTENVFLRDDPLVTSGPCPSCGFKNRVFFGTIVGVEGFTEEATVKCSNCKEEIVIRRRDLRARTLPK 504
            K AV TEPKCYIDTGIC VT Q+DK R   LY+ P+ ++  + W+G  +E++EPFI +NP+ +  +  P  Y+ ++  TE  F+ ++  +  GPCPSC  +NRV+FG I+GVEGFT+ A  KC NCK    ++R  LRA TLPK
Sbjct:  183 KFAVQTEPKCYIDTGICKVTLQEDKFRSNLLYL-PATVIGVVAWIGFGFEVLEPFIRINPVVLTLMGTPLIYLGARTLTEE-FIFENKFLAYGPCPSCQAENRVYFGNILGVEGFTDVANAKCPNCKTTFTVQRNTLRASTLPK 324          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16725.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSN6_9STRA8.740e-6067.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z693_9STRA1.330e-5656.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3QAK1_9STRA1.830e-5050.60Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S0SSR4_9STRA3.040e-4846.99Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
D7FM52_ECTSI9.740e-4756.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A448Z6R2_9STRA2.130e-4452.08Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A8J9WZ54_PHATR2.090e-4249.31Hypothetical protein n=1 Tax=Phaeodactylum tricorn... [more]
A0A7S4N636_9STRA3.390e-4253.15Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1E7FKP9_9STRA3.930e-4151.39Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
B7FRN6_PHATC5.490e-4148.61Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16725contigP-wetherbeei_contig16725:337..1124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FM52
Model size510
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009767,GO:0009773,GO:0009987,GO:0015979,GO:0016020,GO:0016491,GO:0016730,GO:0019684,GO:0019904,GO:0022900,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0055114
Exons2
Evalue1.28e-47
EggNOG OGs2CE1K@1|root,2QRSK@2759|Eukaryota
Descriptionphotosynthetic electron transport in photosystem I
Cds size492
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186095.7508898-CDS-P-wetherbeei_contig16725:336..5441683186095.7508898-CDS-P-wetherbeei_contig16725:336..544Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16725 337..544 -
1683186095.7629616-CDS-P-wetherbeei_contig16725:822..11061683186095.7629616-CDS-P-wetherbeei_contig16725:822..1106Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16725 823..1106 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186095.7727273-UTR-P-wetherbeei_contig16725:1106..11241683186095.7727273-UTR-P-wetherbeei_contig16725:1106..1124Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16725 1107..1124 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16725.2.1prot_P-wetherbeei_contig16725.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16725 337..1106 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16725.2.1

>prot_P-wetherbeei_contig16725.2.1 ID=prot_P-wetherbeei_contig16725.2.1|Name=mRNA_P-wetherbeei_contig16725.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
MTDAEFDVLKQSLRETGSKVAVSTEPKCYIDTGICAVTFQKDKVRQASLY
VFPSGIVFGLFWLGALYEIIEPFINLNPIFILALAAPPTYVTSKWFTENV
FLRDDPLVTSGPCPSCGFKNRVFFGTIVGVEGFTEEATVKCSNCKEEIVI
RRRDLRARTLPKV*
back to top

mRNA from alignment at P-wetherbeei_contig16725:337..1124-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16725.2.1 ID=mRNA_P-wetherbeei_contig16725.2.1|Name=mRNA_P-wetherbeei_contig16725.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=788bp|location=Sequence derived from alignment at P-wetherbeei_contig16725:337..1124- (Phaeothamnion wetherbeei SAG_119_79)
CTGCAGGGCGCGCCGATCATGACGGACGCCGAGTTCGACGTGCTGAAGCA GAGCCTGCGCGAGACAGGCTCCAAGGTGGCCGTGAGCACCGAGCCGAAGT GCTACATCGACACGGGAATCTGCGCTGTCACCTTCCAGAAGGACAAGGTG CGGCAGGCGTCGCTGTACGTGTTCCCGTCCGGCATCGTTTTTGGGCTCTT CTGGCTGGGGGCACTGTACGAGATTATCGAGCCGTTCATCAACCTTAACC CCATCTTCATCCTGGCGCTCGCCGCGCCGCCGACCTACGTCACCTCCAAG TGGTGAGTTTTGCATACCTTTGCTTTGTGCTCGCTGTGATAGGCCGTTGC ACCGGTTGTCTTTTGAAAAGTTCCTTTTGTGTCTGAGGAAATTTCTGCGA AAGGCATGTCTTTTGGTGCATACGCCAGCAGAATCTGGAAATAATTGACC TATTATACATTGTCCAAACACACCTAGATGGTTGCCCGTTTTATTCTTTC TGGTAAACACGAACCCCTCGTCACCTTTCATCGTCTATCTGTATTTCTGG TTTTCCGGACGTTTTCTCTCGGCCGAAAAGGTTCACGGAGAACGTTTTTC TGCGGGACGACCCGCTGGTGACGTCCGGGCCGTGCCCATCGTGCGGCTTC AAGAACCGCGTCTTTTTCGGGACCATTGTCGGGGTGGAGGGCTTCACGGA GGAGGCCACGGTAAAGTGCTCCAACTGCAAGGAGGAGATCGTCATCCGCC GTCGCGACCTCCGTGCACGCACCCTGCCCAAGGTCTAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig16725:337..1124-

>mRNA_P-wetherbeei_contig16725.2.1 ID=mRNA_P-wetherbeei_contig16725.2.1|Name=mRNA_P-wetherbeei_contig16725.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig16725:337..1124- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGACGCCGAGTTCGACGTGCTGAAGCAGAGCCTGCGCGAGACAGG
CTCCAAGGTGGCCGTGAGCACCGAGCCGAAGTGCTACATCGACACGGGAA
TCTGCGCTGTCACCTTCCAGAAGGACAAGGTGCGGCAGGCGTCGCTGTAC
GTGTTCCCGTCCGGCATCGTTTTTGGGCTCTTCTGGCTGGGGGCACTGTA
CGAGATTATCGAGCCGTTCATCAACCTTAACCCCATCTTCATCCTGGCGC
TCGCCGCGCCGCCGACCTACGTCACCTCCAAGTGGTTCACGGAGAACGTT
TTTCTGCGGGACGACCCGCTGGTGACGTCCGGGCCGTGCCCATCGTGCGG
CTTCAAGAACCGCGTCTTTTTCGGGACCATTGTCGGGGTGGAGGGCTTCA
CGGAGGAGGCCACGGTAAAGTGCTCCAACTGCAAGGAGGAGATCGTCATC
CGCCGTCGCGACCTCCGTGCACGCACCCTGCCCAAGGTCTAA
back to top