mRNA_P-wetherbeei_contig1672.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1672.4.1 vs. uniprot
Match: D8LK31_ECTSI (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK31_ECTSI) HSP 1 Score: 184 bits (466), Expect = 3.410e-49 Identity = 124/359 (34.54%), Postives = 162/359 (45.13%), Query Frame = 1
Query: 10 PRTAEEIDAVNAKAASYTKIMTAVWAKRKAKASDPDAMDLLAKVIRLNPDSYSLWNYRREAVLSLLSQIGDEQPANGAAVAG------------------------IYQTELSLAXXXXXXXXXXXXXXXXXXXALERGLEAVGGADALDRELEXXXXXXXXXXXXXXXXXXXXXXVRLRGLPVAEDFAFTTGKIAQNFSNYSAFHHRSELLPFVAAERGSQEGRWQLLAEELDMAHQAMYTEPADQSAWWYHQFLIRWAGAGCPVAASPXXXXXXXXXADVPLAATSGPTTAFGAEAKDGNGGSSGDNCGDENSSGGEPEDGAGTVERYEAVLHAEAACMRELVELDDGGKWPTLTLL 1014
P+T EE DAV AK ++Y K++ A+ KR D + LL K++RL+PD YS+WN+R+EAVL+ LS+I D G + G IY+ EL+L+ ALERGL+ +GG AL +L GL E+F FTT KI QNFSNYSAFH RS++LP + E G RWQLL++ELD+ H AM+TEPADQS WWYH FL+ WA G D+C D ERYE +L AEAA + EL+E++ KW + LL
Sbjct: 10 PQTKEEKDAVRAKISNYKKVVGAIRHKRATGQMDAEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSRIEDAHSRQGGSDDGDKAAEEISSGTLLSPSVQEQQKKKIYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAGDLALCATFLELDGRNFHCWAHRMWVAERMGLSAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHD--RWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDGT-------------------------------------------DSCSDS--------------ERYENILRAEAATLGELIEVEVRCKWAEVALL 309
BLAST of mRNA_P-wetherbeei_contig1672.4.1 vs. uniprot
Match: A0A835Z1Z5_9STRA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z5_9STRA) HSP 1 Score: 172 bits (436), Expect = 1.600e-45 Identity = 103/249 (41.37%), Postives = 136/249 (54.62%), Query Frame = 1
Query: 10 PRTAEEIDAVNAKAASYTKIMTAVWAKRKAKASDPDA------MDLLAKVIRLNPDSYSLWNYRREAVLSLLSQIGDEQPANGAAVAGIYQT-------ELSLAXXXXXXXXXXXXXXXXXXXALERGLEAVGGADALDRELEXXXXXXXXXXXXXXXXXXXXXXVRLRGLPVAEDFAFTTGKIAQNFSNYSAFHHRSELLPFVAAERGSQEGRWQLLAEELDMAHQAMYTEPADQSAWWYHQFLIRWA 717
PR+ EE+ A+ AK +Y+K++ A R+ + P A +D++ KV+R+NPD YS+WNYR+EA L +L + A G A G+ + EL+LA LERG +A+GG A RELE V GL EDFAFTT KI +NFSNYSAFH+RS+LLP VA RG+ G L+ +EL+M HQA +TEP DQSAWWYH+FL+ WA
Sbjct: 10 PRSEEELAAIRAKVLNYSKVVAATNQLRRELLAHPSAQTQKTLLDVVDKVVRVNPDYYSMWNYRKEAALPIL------EAAEGQAKVGVQERRAQVVEQELALAAAAFKRNPKCYSAWHHRRWVLERGADAIGGEAAYRRELELCRQFLLLDSRNFHCWAYRGWVVEQAGLSAEEDFAFTTEKILENFSNYSAFHYRSKLLPAVAEARGAG-GVLTLVEQELEMVHQAFFTEPDDQSAWWYHRFLVGWA 251
BLAST of mRNA_P-wetherbeei_contig1672.4.1 vs. uniprot
Match: A0A7R9U2X8_9STRA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2X8_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 6.140e-19 Identity = 90/232 (38.79%), Postives = 127/232 (54.74%), Query Frame = 1
Query: 13 RTAEEIDAVNAKAASYTKIMTAVWAKRKAKASDPDAMDLLAKVIRLNPDSYSLWNYRREAVLSLLSQIGDEQPANGAAVAGIYQTELSLAXXXXXXXXXXXXXXXXXXXALERGLEAVGGADALDRELEXXXXXXXXXXXXXXXXXXXXXXVRLRGLPVAEDFAFTTGKIAQNFSNYSAFHHRSELLPFVAAERGSQEGRWQLLAEELDMAHQAMYTEPADQSAWWYHQFLI 708
R+ EE+ + K+ Y ++ + ++ R A DL A+++R+NPD+YS+WNYRR+ +L G+ P + A + Q EL ++ L+R LE+ G L E XXXXXXXXXXXXXXXXXXX L G+ E++ +T ++ NFSNYSAFH RS +L +A E G E + L +ELD Q T P DQSAWWY++FL+
Sbjct: 26 RSEEELAKLQEKSKLYRRLESTIFDLRDKGTFTSAAKDLTAQLLRVNPDNYSVWNYRRQ----ILFASGETAPESWKAPPDVAQEELVMSAEALKRQPKSYPAWYHRKWILDR-LES-GRERTLQSEXXXXXXXXXXXXXXXXXXXXXRYVAHLAGVTPEENYEYTEDRLNANFSNYSAFHERSRILASLA-EYG--EDKISTLQQELDFVQQITVTAPDDQSAWWYYRFLL 248
BLAST of mRNA_P-wetherbeei_contig1672.4.1 vs. uniprot
Match: A0A0M0JE27_9EUKA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JE27_9EUKA) HSP 1 Score: 99.0 bits (245), Expect = 6.630e-19 Identity = 76/237 (32.07%), Postives = 103/237 (43.46%), Query Frame = 1
Query: 46 KAASYTKIMTAVWAKRKAKASDPDAMDLLAKVIRLNPDSYSLWNYRREAVLSLLSQIGDEQPANGAAVAGIYQTELSLAXXXXXXXXXXXXXXXXXXXALERGLEAVGGADALDRELEXXXXXXXXXXXXXXXXXXXXXXVRLRGLPVAEDFAFTTGKIAQNFSNYSAFHHRSELLPFVAAERGSQEGRWQL---LAEELDMAHQAMYTEPADQSAWWYHQFLIRWAGAGCPVAASP 747
+AASY A +R AK D +++ +AKV+ NPD ++WN+RRE VL + D A +A T+ L E EL+ VR+ G+ + AFTT KI NFSNYSA+H+RS+LLP V A G+ EG QL L EL++ A +T P D SAW+YH++LI G A P
Sbjct: 22 RAASYRSRSAAAMERRAAKVYDAASLEAVAKVVTENPDFATMWNFRRE-VLGHMFPDADVAARKAACLAEFALTQECLGINPKSYPVWYHREWVLLWGECEWQWPV---------ELKLTAKLLALDDRNFHCWTYRRNVVRVAGVTAEAELAFTTTKIQANFSNYSAWHYRSKLLPAVHASAGA-EGAAQLGAVLRNELELVRNAFFTAPEDSSAWFYHRWLIAQLAPGAAAALPP 247
BLAST of mRNA_P-wetherbeei_contig1672.4.1 vs. uniprot
Match: A0A7S1TWU3_9STRA (Geranylgeranyl transferase type-2 subunit alpha (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWU3_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 9.540e-19 Identity = 95/237 (40.08%), Postives = 125/237 (52.74%), Query Frame = 1
Query: 13 RTAEEIDAVNAKAASYTKIMTAVWAKRKAKASDPDAMDLLAKVIRLNPDSYSLWNYRREAVLSLLSQIGDEQPANGAA-----VAGIYQTELSLAXXXXXXXXXXXXXXXXXXXALERGLEAVGGADALDRELEXXXXXXXXXXXXXXXXXXXXXXVRLRGLPVAEDFAFTTGKIAQNFSNYSAFHHRSELLPFVAAERGSQEGRWQLLAEELDMAHQAMYTEPADQSAWWYHQFLI 708
RT EE+ AKA Y + A+ R+ + A+DL A+++R+NPD+YS WN+RRE + + + E GA A + EL L LER A A XXXXXXXXXXXXXXXXXXXXX + G+ E+ A+T ++ NFSNYSAFH RS++LP + A R E +LAEEL + TEP DQSAWWY++FL+
Sbjct: 57 RTEEELAKRAAKAKQYKALEAALQDVRRRGDNSDAAVDLGAQLLRVNPDAYSAWNHRREMLFARTTAAAGETEGGGAGGAWELAADVAAGELRLTAEALRRQPKSYPAWHHRRWVLER--LAGDRETAFAEXXXXXXXXXXXXXXXXXXXXXXXXAAAVAGVTPEENLAYTQDRLDVNFSNYSAFHERSQVLPRLEAYR---EDPLAVLAEELMLVQNITVTEPEDQSAWWYYRFLL 288
BLAST of mRNA_P-wetherbeei_contig1672.4.1 vs. uniprot
Match: M2Y9D7_GALSU (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y9D7_GALSU) HSP 1 Score: 95.5 bits (236), Expect = 5.770e-18 Identity = 64/205 (31.22%), Postives = 100/205 (48.78%), Query Frame = 1
Query: 118 AMDLLAKVIRLNPDSYSLWNYRREAVLSLLSQIGDEQPAN-GAAVAGIYQTELSLAXXXXXXXXXXXXXXXXXXXALERG---LEAVGGADALDRELEXXXXXXXXXXXXXXXXXXXXXXVRLRGL-PVAEDFAFTTGKIAQNFSNYSAFHHRSELLPFVAAERGSQEGRWQLLAEELDMAHQAMYTEPADQSAWWYHQFLIRWA 717
A+ L+ +V+ LNPD YSLWNY + VL+ + +I + +PA+ A ++ +E L L+ L + +ELE +RGL P E+ F T +I NFSNYSA+HHRS +LP + ++ Q + + E+L++ QA++TEP DQSAW+Y ++L+R A
Sbjct: 38 ALSLVNRVLELNPDEYSLWNYHKRFVLNEIEKIMNYEPASFQEAAEQLFDSEFELTQRALYRHPKAYSAWQHRIFLLKTAKYHLPSKIYEGYFKKELEICAKLLDLDDRNFHGWAHRMRVGDIRGLQPSREELQFVTERIYGNFSNYSAWHHRSRILPILFKDQRDQ--YYLAVQEDLELVKQAIFTEPEDQSAWFYFRWLLRGA 240
BLAST of mRNA_P-wetherbeei_contig1672.4.1 vs. uniprot
Match: V4C0L0_LOTGI (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4C0L0_LOTGI) HSP 1 Score: 94.0 bits (232), Expect = 1.540e-17 Identity = 70/225 (31.11%), Postives = 107/225 (47.56%), Query Frame = 1
Query: 58 YTKIMTAVWAKRKAKASDPDAMDLLAKVIRLNPDSYSLWNYRREAVLSLLSQIGDEQPANGAAVAGIYQTELSLAXXXXXXXXXXXXXXXXXXXALERGLEAVGGADALDRELEXXXXXXXXXXXXXXXXXXXXXXVRLRGLPVAEDFAFTTGKIAQNFSNYSAFHHRSELLPFVAAERGSQEG-RWQLLAEELDMAHQAMYTEPADQSAWWYHQFLIRWAGAGC 729
YT + KR+ K D +A+ + +++ +NPD YSLWN+R+E L + + N +Y E L + REL+ XXXXXXXXV+ +P ++F FTT KIA NFSNYS++H+RS+LLP + + G + +L +E + A +T+P DQS+W+YH++L+ G GC
Sbjct: 28 YTAATQRTFQKRENKEYDEEALKITGEILSVNPDFYSLWNFRKEIFLHF-KDVKPTEELNKLFEEELYFLESCLKVNPKSYGTWHHRCFVMTTMPIPDWT----------RELQLCNKFLEYDERNFHXXXXXXXXVKTSNVPAKDEFDFTTAKIASNFSNYSSWHYRSKLLPQLYPDSHHSSGVQEDILLQEFETVQNAFFTDPNDQSSWFYHRWLL---GRGC 238
BLAST of mRNA_P-wetherbeei_contig1672.4.1 vs. uniprot
Match: A9SYY6_PHYPA (Geranylgeranyl transferase type-2 subunit alpha n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9SYY6_PHYPA) HSP 1 Score: 96.7 bits (239), Expect = 2.150e-17 Identity = 84/198 (42.42%), Postives = 116/198 (58.59%), Query Frame = 1
Query: 118 AMDLLAKVIRLNPDSYSLWNYRREAVLSLLSQIGDEQPANGAAVAGIYQTELSLAXXXXXXXXXXXXXXXXXXXALERGLEAVGGADALDRELEXXXXXXXXXXXXXXXXXXXXXXVRLRGLPVAEDFAFTTGKIAQNFSNYSAFHHRSELLPFVAAERGSQEGRWQ-LLAEELDMAHQAMYTEPADQSAWWYHQFLI 708
A+D A+++ LNP+ YS WNYR+ AV LL+ DE+ I QTEL + XXXXXXXXXXXXXXXXX ++ GL +D E XXXXXX + +G+ V ++ FTT KI +NFSNYSA+H+RS LL ++ ++ GR Q L EE ++ + YT+P DQS W+Y+ +L+
Sbjct: 48 ALDQNARLLELNPEFYSAWNYRKRAVRHLLNLESDEEVRKR-----IVQTELDVVVXXXXXXXXXXXXXXXXXWVIQFGLSP------MDAEFLLLKKLLKLDARNFHXXXXXXFVAKTKGVAVEDELLFTTDKINENFSNYSAWHNRSALLSEISKNEAAENGRVQERLQEEYELVKNSFYTDPDDQSGWFYYSWLL 234
BLAST of mRNA_P-wetherbeei_contig1672.4.1 vs. uniprot
Match: UPI00112B5183 (geranylgeranyl transferase type-2 subunit alpha isoform X1 n=4 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112B5183) HSP 1 Score: 96.3 bits (238), Expect = 2.170e-17 Identity = 64/219 (29.22%), Postives = 104/219 (47.49%), Query Frame = 1
Query: 58 YTKIMTAVWAKRKAKASDPDAMDLLAKVIRLNPDSYSLWNYRREAVLSLLSQIGDEQPANGAAVAGIYQTELSLAXXXXXXXXXXXXXXXXXXXALERGLEAVGGADALDRELEXXXXXXXXXXXXXXXXXXXXXXVRLRGLPVAEDFAFTTGKIAQNFSNYSAFHHRSELLPFVAAERGSQEGRW--QLLAEELDMAHQAMYTEPADQSAWWYHQFLI 708
YT + ++ KR+++ D + ++L +++ NPD +LWN+RRE L L + +++ + +Y EL LER + RELE +P E+ AFT G I +NFSNYS++H+RS+LLP + + Q GR ++L EL++A A +T+P+DQSAW YH++L+
Sbjct: 29 YTATTSTIFQKRESQELDQEVLELTNQILGANPDFATLWNFRREIFLHLEKEKSEDE------LQSLYTGELFHLDSCLRVNPKSYGSWHHRCWVLERMPQP-----DWSRELELCSRFLELDERNFHCWDYRRFVAHRSEVPAEEELAFTHGLITRNFSNYSSWHYRSKLLPLIHPDPQRQ-GRVTEEVLLRELELAQNAFFTDPSDQSAWLYHRWLL 235
BLAST of mRNA_P-wetherbeei_contig1672.4.1 vs. uniprot
Match: R1DKV6_EMIHU (Geranylgeranyl transferase type-2 subunit alpha n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DKV6_EMIHU) HSP 1 Score: 93.2 bits (230), Expect = 4.330e-17 Identity = 88/229 (38.43%), Postives = 121/229 (52.84%), Query Frame = 1
Query: 46 KAASYTKIMTAVWAKRKAKASDPDAMDLLAKVIRLNPDSYSLWNYRREAVLSL--LSQIGDEQPANGAAVAGIYQTELSLAXXXXXXXXXXXXXXXXXXXALERGLEAVGGADALDRELEXXXXXXXXXXXXXXXXXXXXXXVRLRGLPVAEDFAFTTGKIAQNFSNYSAFHHRSELLPFV------AAERGSQEGRWQLLAEELDMAHQAMYTEPADQSAWWYHQFLI 708
+AASY+ + A +A+R A D +++ A+V+ +NPD +WN+RRE + SL S D AV + EL+L L G G A REL XXXXXXXXXXXXXXXXXXX V+L + + FTT K+ NFSNYSA+H+RS+LLP + AA + L EL++ A +T P DQSAW+YH++++
Sbjct: 24 RAASYSALSRAAFARRAAGLWDAASLEAAARVLEVNPDMAPIWNFRRECLQSLHGASVPPDAAAEPAGAVRAACEAELALTQACLGANPKSYPVWYHRTWVLTWG----GCGWAYARELXXXXXXXXXXXXXXXXXXXXRFVVQLSKVTAEAELRFTTQKVEANFSNYSAWHYRSKLLPAMHAAADPAATAAASGALRAALLAELELLRNAFFTAPEDQSAWFYHRWVL 248 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1672.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1672.4.1 >prot_P-wetherbeei_contig1672.4.1 ID=prot_P-wetherbeei_contig1672.4.1|Name=mRNA_P-wetherbeei_contig1672.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=393bp MTAVWAKRKAKASDPDAMDLLAKVIRLNPDSYSLWNYRREAVLSLLSQIGback to top mRNA from alignment at P-wetherbeei_contig1672:4245..5826+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1672.4.1 ID=mRNA_P-wetherbeei_contig1672.4.1|Name=mRNA_P-wetherbeei_contig1672.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1582bp|location=Sequence derived from alignment at P-wetherbeei_contig1672:4245..5826+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1672:4245..5826+ >mRNA_P-wetherbeei_contig1672.4.1 ID=mRNA_P-wetherbeei_contig1672.4.1|Name=mRNA_P-wetherbeei_contig1672.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1179bp|location=Sequence derived from alignment at P-wetherbeei_contig1672:4245..5826+ (Phaeothamnion wetherbeei SAG_119_79)back to top |