mRNA_P-wetherbeei_contig1672.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1672.4.1
Unique NamemRNA_P-wetherbeei_contig1672.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1672.4.1 vs. uniprot
Match: D8LK31_ECTSI (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK31_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 3.410e-49
Identity = 124/359 (34.54%), Postives = 162/359 (45.13%), Query Frame = 1
Query:   10 PRTAEEIDAVNAKAASYTKIMTAVWAKRKAKASDPDAMDLLAKVIRLNPDSYSLWNYRREAVLSLLSQIGDEQPANGAAVAG------------------------IYQTELSLAXXXXXXXXXXXXXXXXXXXALERGLEAVGGADALDRELEXXXXXXXXXXXXXXXXXXXXXXVRLRGLPVAEDFAFTTGKIAQNFSNYSAFHHRSELLPFVAAERGSQEGRWQLLAEELDMAHQAMYTEPADQSAWWYHQFLIRWAGAGCPVAASPXXXXXXXXXADVPLAATSGPTTAFGAEAKDGNGGSSGDNCGDENSSGGEPEDGAGTVERYEAVLHAEAACMRELVELDDGGKWPTLTLL 1014
            P+T EE DAV AK ++Y K++ A+  KR     D +   LL K++RL+PD YS+WN+R+EAVL+ LS+I D     G +  G                        IY+ EL+L+                   ALERGL+ +GG  AL  +L                           GL   E+F FTT KI QNFSNYSAFH RS++LP +  E G    RWQLL++ELD+ H AM+TEPADQS WWYH FL+ WA  G                                            D+C D               ERYE +L AEAA + EL+E++   KW  + LL
Sbjct:   10 PQTKEEKDAVRAKISNYKKVVGAIRHKRATGQMDAEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSRIEDAHSRQGGSDDGDKAAEEISSGTLLSPSVQEQQKKKIYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAGDLALCATFLELDGRNFHCWAHRMWVAERMGLSAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHD--RWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDGT-------------------------------------------DSCSDS--------------ERYENILRAEAATLGELIEVEVRCKWAEVALL 309          
BLAST of mRNA_P-wetherbeei_contig1672.4.1 vs. uniprot
Match: A0A835Z1Z5_9STRA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z5_9STRA)

HSP 1 Score: 172 bits (436), Expect = 1.600e-45
Identity = 103/249 (41.37%), Postives = 136/249 (54.62%), Query Frame = 1
Query:   10 PRTAEEIDAVNAKAASYTKIMTAVWAKRKAKASDPDA------MDLLAKVIRLNPDSYSLWNYRREAVLSLLSQIGDEQPANGAAVAGIYQT-------ELSLAXXXXXXXXXXXXXXXXXXXALERGLEAVGGADALDRELEXXXXXXXXXXXXXXXXXXXXXXVRLRGLPVAEDFAFTTGKIAQNFSNYSAFHHRSELLPFVAAERGSQEGRWQLLAEELDMAHQAMYTEPADQSAWWYHQFLIRWA 717
            PR+ EE+ A+ AK  +Y+K++ A    R+   + P A      +D++ KV+R+NPD YS+WNYR+EA L +L      + A G A  G+ +        EL+LA                    LERG +A+GG  A  RELE                      V   GL   EDFAFTT KI +NFSNYSAFH+RS+LLP VA  RG+  G   L+ +EL+M HQA +TEP DQSAWWYH+FL+ WA
Sbjct:   10 PRSEEELAAIRAKVLNYSKVVAATNQLRRELLAHPSAQTQKTLLDVVDKVVRVNPDYYSMWNYRKEAALPIL------EAAEGQAKVGVQERRAQVVEQELALAAAAFKRNPKCYSAWHHRRWVLERGADAIGGEAAYRRELELCRQFLLLDSRNFHCWAYRGWVVEQAGLSAEEDFAFTTEKILENFSNYSAFHYRSKLLPAVAEARGAG-GVLTLVEQELEMVHQAFFTEPDDQSAWWYHRFLVGWA 251          
BLAST of mRNA_P-wetherbeei_contig1672.4.1 vs. uniprot
Match: A0A7R9U2X8_9STRA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2X8_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 6.140e-19
Identity = 90/232 (38.79%), Postives = 127/232 (54.74%), Query Frame = 1
Query:   13 RTAEEIDAVNAKAASYTKIMTAVWAKRKAKASDPDAMDLLAKVIRLNPDSYSLWNYRREAVLSLLSQIGDEQPANGAAVAGIYQTELSLAXXXXXXXXXXXXXXXXXXXALERGLEAVGGADALDRELEXXXXXXXXXXXXXXXXXXXXXXVRLRGLPVAEDFAFTTGKIAQNFSNYSAFHHRSELLPFVAAERGSQEGRWQLLAEELDMAHQAMYTEPADQSAWWYHQFLI 708
            R+ EE+  +  K+  Y ++ + ++  R        A DL A+++R+NPD+YS+WNYRR+    +L   G+  P +  A   + Q EL ++                    L+R LE+ G    L  E  XXXXXXXXXXXXXXXXXXX     L G+   E++ +T  ++  NFSNYSAFH RS +L  +A E G  E +   L +ELD   Q   T P DQSAWWY++FL+
Sbjct:   26 RSEEELAKLQEKSKLYRRLESTIFDLRDKGTFTSAAKDLTAQLLRVNPDNYSVWNYRRQ----ILFASGETAPESWKAPPDVAQEELVMSAEALKRQPKSYPAWYHRKWILDR-LES-GRERTLQSEXXXXXXXXXXXXXXXXXXXXXRYVAHLAGVTPEENYEYTEDRLNANFSNYSAFHERSRILASLA-EYG--EDKISTLQQELDFVQQITVTAPDDQSAWWYYRFLL 248          
BLAST of mRNA_P-wetherbeei_contig1672.4.1 vs. uniprot
Match: A0A0M0JE27_9EUKA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JE27_9EUKA)

HSP 1 Score: 99.0 bits (245), Expect = 6.630e-19
Identity = 76/237 (32.07%), Postives = 103/237 (43.46%), Query Frame = 1
Query:   46 KAASYTKIMTAVWAKRKAKASDPDAMDLLAKVIRLNPDSYSLWNYRREAVLSLLSQIGDEQPANGAAVAGIYQTELSLAXXXXXXXXXXXXXXXXXXXALERGLEAVGGADALDRELEXXXXXXXXXXXXXXXXXXXXXXVRLRGLPVAEDFAFTTGKIAQNFSNYSAFHHRSELLPFVAAERGSQEGRWQL---LAEELDMAHQAMYTEPADQSAWWYHQFLIRWAGAGCPVAASP 747
            +AASY     A   +R AK  D  +++ +AKV+  NPD  ++WN+RRE VL  +    D      A +A    T+  L                      E              EL+                      VR+ G+    + AFTT KI  NFSNYSA+H+RS+LLP V A  G+ EG  QL   L  EL++   A +T P D SAW+YH++LI     G   A  P
Sbjct:   22 RAASYRSRSAAAMERRAAKVYDAASLEAVAKVVTENPDFATMWNFRRE-VLGHMFPDADVAARKAACLAEFALTQECLGINPKSYPVWYHREWVLLWGECEWQWPV---------ELKLTAKLLALDDRNFHCWTYRRNVVRVAGVTAEAELAFTTTKIQANFSNYSAWHYRSKLLPAVHASAGA-EGAAQLGAVLRNELELVRNAFFTAPEDSSAWFYHRWLIAQLAPGAAAALPP 247          
BLAST of mRNA_P-wetherbeei_contig1672.4.1 vs. uniprot
Match: A0A7S1TWU3_9STRA (Geranylgeranyl transferase type-2 subunit alpha (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWU3_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 9.540e-19
Identity = 95/237 (40.08%), Postives = 125/237 (52.74%), Query Frame = 1
Query:   13 RTAEEIDAVNAKAASYTKIMTAVWAKRKAKASDPDAMDLLAKVIRLNPDSYSLWNYRREAVLSLLSQIGDEQPANGAA-----VAGIYQTELSLAXXXXXXXXXXXXXXXXXXXALERGLEAVGGADALDRELEXXXXXXXXXXXXXXXXXXXXXXVRLRGLPVAEDFAFTTGKIAQNFSNYSAFHHRSELLPFVAAERGSQEGRWQLLAEELDMAHQAMYTEPADQSAWWYHQFLI 708
            RT EE+    AKA  Y  +  A+   R+   +   A+DL A+++R+NPD+YS WN+RRE + +  +    E    GA       A +   EL L                     LER   A     A      XXXXXXXXXXXXXXXXXXXXX   + G+   E+ A+T  ++  NFSNYSAFH RS++LP + A R   E    +LAEEL +      TEP DQSAWWY++FL+
Sbjct:   57 RTEEELAKRAAKAKQYKALEAALQDVRRRGDNSDAAVDLGAQLLRVNPDAYSAWNHRREMLFARTTAAAGETEGGGAGGAWELAADVAAGELRLTAEALRRQPKSYPAWHHRRWVLER--LAGDRETAFAEXXXXXXXXXXXXXXXXXXXXXXXXAAAVAGVTPEENLAYTQDRLDVNFSNYSAFHERSQVLPRLEAYR---EDPLAVLAEELMLVQNITVTEPEDQSAWWYYRFLL 288          
BLAST of mRNA_P-wetherbeei_contig1672.4.1 vs. uniprot
Match: M2Y9D7_GALSU (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y9D7_GALSU)

HSP 1 Score: 95.5 bits (236), Expect = 5.770e-18
Identity = 64/205 (31.22%), Postives = 100/205 (48.78%), Query Frame = 1
Query:  118 AMDLLAKVIRLNPDSYSLWNYRREAVLSLLSQIGDEQPAN-GAAVAGIYQTELSLAXXXXXXXXXXXXXXXXXXXALERG---LEAVGGADALDRELEXXXXXXXXXXXXXXXXXXXXXXVRLRGL-PVAEDFAFTTGKIAQNFSNYSAFHHRSELLPFVAAERGSQEGRWQLLAEELDMAHQAMYTEPADQSAWWYHQFLIRWA 717
            A+ L+ +V+ LNPD YSLWNY +  VL+ + +I + +PA+   A   ++ +E  L                     L+     L +        +ELE                        +RGL P  E+  F T +I  NFSNYSA+HHRS +LP +  ++  Q   +  + E+L++  QA++TEP DQSAW+Y ++L+R A
Sbjct:   38 ALSLVNRVLELNPDEYSLWNYHKRFVLNEIEKIMNYEPASFQEAAEQLFDSEFELTQRALYRHPKAYSAWQHRIFLLKTAKYHLPSKIYEGYFKKELEICAKLLDLDDRNFHGWAHRMRVGDIRGLQPSREELQFVTERIYGNFSNYSAWHHRSRILPILFKDQRDQ--YYLAVQEDLELVKQAIFTEPEDQSAWFYFRWLLRGA 240          
BLAST of mRNA_P-wetherbeei_contig1672.4.1 vs. uniprot
Match: V4C0L0_LOTGI (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4C0L0_LOTGI)

HSP 1 Score: 94.0 bits (232), Expect = 1.540e-17
Identity = 70/225 (31.11%), Postives = 107/225 (47.56%), Query Frame = 1
Query:   58 YTKIMTAVWAKRKAKASDPDAMDLLAKVIRLNPDSYSLWNYRREAVLSLLSQIGDEQPANGAAVAGIYQTELSLAXXXXXXXXXXXXXXXXXXXALERGLEAVGGADALDRELEXXXXXXXXXXXXXXXXXXXXXXVRLRGLPVAEDFAFTTGKIAQNFSNYSAFHHRSELLPFVAAERGSQEG-RWQLLAEELDMAHQAMYTEPADQSAWWYHQFLIRWAGAGC 729
            YT      + KR+ K  D +A+ +  +++ +NPD YSLWN+R+E  L     +   +  N      +Y  E  L                     +              REL+              XXXXXXXXV+   +P  ++F FTT KIA NFSNYS++H+RS+LLP +  +     G +  +L +E +    A +T+P DQS+W+YH++L+   G GC
Sbjct:   28 YTAATQRTFQKRENKEYDEEALKITGEILSVNPDFYSLWNFRKEIFLHF-KDVKPTEELNKLFEEELYFLESCLKVNPKSYGTWHHRCFVMTTMPIPDWT----------RELQLCNKFLEYDERNFHXXXXXXXXVKTSNVPAKDEFDFTTAKIASNFSNYSSWHYRSKLLPQLYPDSHHSSGVQEDILLQEFETVQNAFFTDPNDQSSWFYHRWLL---GRGC 238          
BLAST of mRNA_P-wetherbeei_contig1672.4.1 vs. uniprot
Match: A9SYY6_PHYPA (Geranylgeranyl transferase type-2 subunit alpha n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9SYY6_PHYPA)

HSP 1 Score: 96.7 bits (239), Expect = 2.150e-17
Identity = 84/198 (42.42%), Postives = 116/198 (58.59%), Query Frame = 1
Query:  118 AMDLLAKVIRLNPDSYSLWNYRREAVLSLLSQIGDEQPANGAAVAGIYQTELSLAXXXXXXXXXXXXXXXXXXXALERGLEAVGGADALDRELEXXXXXXXXXXXXXXXXXXXXXXVRLRGLPVAEDFAFTTGKIAQNFSNYSAFHHRSELLPFVAAERGSQEGRWQ-LLAEELDMAHQAMYTEPADQSAWWYHQFLI 708
            A+D  A+++ LNP+ YS WNYR+ AV  LL+   DE+         I QTEL +  XXXXXXXXXXXXXXXXX  ++ GL        +D E                XXXXXX   + +G+ V ++  FTT KI +NFSNYSA+H+RS LL  ++    ++ GR Q  L EE ++   + YT+P DQS W+Y+ +L+
Sbjct:   48 ALDQNARLLELNPEFYSAWNYRKRAVRHLLNLESDEEVRKR-----IVQTELDVVVXXXXXXXXXXXXXXXXXWVIQFGLSP------MDAEFLLLKKLLKLDARNFHXXXXXXFVAKTKGVAVEDELLFTTDKINENFSNYSAWHNRSALLSEISKNEAAENGRVQERLQEEYELVKNSFYTDPDDQSGWFYYSWLL 234          
BLAST of mRNA_P-wetherbeei_contig1672.4.1 vs. uniprot
Match: UPI00112B5183 (geranylgeranyl transferase type-2 subunit alpha isoform X1 n=4 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112B5183)

HSP 1 Score: 96.3 bits (238), Expect = 2.170e-17
Identity = 64/219 (29.22%), Postives = 104/219 (47.49%), Query Frame = 1
Query:   58 YTKIMTAVWAKRKAKASDPDAMDLLAKVIRLNPDSYSLWNYRREAVLSLLSQIGDEQPANGAAVAGIYQTELSLAXXXXXXXXXXXXXXXXXXXALERGLEAVGGADALDRELEXXXXXXXXXXXXXXXXXXXXXXVRLRGLPVAEDFAFTTGKIAQNFSNYSAFHHRSELLPFVAAERGSQEGRW--QLLAEELDMAHQAMYTEPADQSAWWYHQFLI 708
            YT   + ++ KR+++  D + ++L  +++  NPD  +LWN+RRE  L L  +  +++      +  +Y  EL                       LER  +         RELE                           +P  E+ AFT G I +NFSNYS++H+RS+LLP +  +   Q GR   ++L  EL++A  A +T+P+DQSAW YH++L+
Sbjct:   29 YTATTSTIFQKRESQELDQEVLELTNQILGANPDFATLWNFRREIFLHLEKEKSEDE------LQSLYTGELFHLDSCLRVNPKSYGSWHHRCWVLERMPQP-----DWSRELELCSRFLELDERNFHCWDYRRFVAHRSEVPAEEELAFTHGLITRNFSNYSSWHYRSKLLPLIHPDPQRQ-GRVTEEVLLRELELAQNAFFTDPSDQSAWLYHRWLL 235          
BLAST of mRNA_P-wetherbeei_contig1672.4.1 vs. uniprot
Match: R1DKV6_EMIHU (Geranylgeranyl transferase type-2 subunit alpha n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DKV6_EMIHU)

HSP 1 Score: 93.2 bits (230), Expect = 4.330e-17
Identity = 88/229 (38.43%), Postives = 121/229 (52.84%), Query Frame = 1
Query:   46 KAASYTKIMTAVWAKRKAKASDPDAMDLLAKVIRLNPDSYSLWNYRREAVLSL--LSQIGDEQPANGAAVAGIYQTELSLAXXXXXXXXXXXXXXXXXXXALERGLEAVGGADALDRELEXXXXXXXXXXXXXXXXXXXXXXVRLRGLPVAEDFAFTTGKIAQNFSNYSAFHHRSELLPFV------AAERGSQEGRWQLLAEELDMAHQAMYTEPADQSAWWYHQFLI 708
            +AASY+ +  A +A+R A   D  +++  A+V+ +NPD   +WN+RRE + SL   S   D       AV    + EL+L                     L  G    G   A  REL XXXXXXXXXXXXXXXXXXX   V+L  +    +  FTT K+  NFSNYSA+H+RS+LLP +      AA   +       L  EL++   A +T P DQSAW+YH++++
Sbjct:   24 RAASYSALSRAAFARRAAGLWDAASLEAAARVLEVNPDMAPIWNFRRECLQSLHGASVPPDAAAEPAGAVRAACEAELALTQACLGANPKSYPVWYHRTWVLTWG----GCGWAYARELXXXXXXXXXXXXXXXXXXXXRFVVQLSKVTAEAELRFTTQKVEANFSNYSAWHYRSKLLPAMHAAADPAATAAASGALRAALLAELELLRNAFFTAPEDQSAWFYHRWVL 248          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1672.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK31_ECTSI3.410e-4934.54Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A835Z1Z5_9STRA1.600e-4541.37Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A7R9U2X8_9STRA6.140e-1938.79Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A0M0JE27_9EUKA6.630e-1932.07Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A7S1TWU3_9STRA9.540e-1940.08Geranylgeranyl transferase type-2 subunit alpha (F... [more]
M2Y9D7_GALSU5.770e-1831.22Geranylgeranyl transferase type-2 subunit alpha n=... [more]
V4C0L0_LOTGI1.540e-1731.11Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A9SYY6_PHYPA2.150e-1742.42Geranylgeranyl transferase type-2 subunit alpha n=... [more]
UPI00112B51832.170e-1729.22geranylgeranyl transferase type-2 subunit alpha is... [more]
R1DKV6_EMIHU4.330e-1738.43Geranylgeranyl transferase type-2 subunit alpha n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1672contigP-wetherbeei_contig1672:4245..5826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LK31
Preferred nameRABGGTA
PFAMsLRR_9,PPTA,RabGGT_insert
Model size1582
Max annot lvl2759|Eukaryota
KEGG koko:K14050,ko:K20306
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0003674,GO:0003824,GO:0004659,GO:0004661,GO:0004663,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005777,GO:0005829,GO:0005886,GO:0005968,GO:0006464,GO:0006605,GO:0006612,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0007600,GO:0007601,GO:0008104,GO:0008150,GO:0008152,GO:0008318,GO:0009987,GO:0010035,GO:0010038,GO:0010941,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016740,GO:0016765,GO:0017016,GO:0017137,GO:0018342,GO:0018344,GO:0019538,GO:0019899,GO:0022607,GO:0031267,GO:0031974,GO:0031981,GO:0032501,GO:0032991,GO:0033036,GO:0034613,GO:0036211,GO:0042221,GO:0042579,GO:0042886,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046686,GO:0046907,GO:0046982,GO:0046983,GO:0048193,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050953,GO:0051020,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090150,GO:0097354,GO:0140096,GO:1901564,GO:1902494,GO:1990234,GO:1990778
Exons1
Evalue1.28e-44
EggNOG OGsCOG5536@1|root,KOG0529@2759|Eukaryota
Ec32 ortholog descriptionProtein prenyltransferase, alpha subunit
Ec32 orthologEc-06_007980.1
EC2.5.1.60
Descriptionprotein geranylgeranylation
Cds size1179
COG categoryO
BRITEko00000,ko01000,ko01006,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186095.6191723-UTR-P-wetherbeei_contig1672:4244..43131683186095.6191723-UTR-P-wetherbeei_contig1672:4244..4313Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1672 4245..4313 +
1683186095.6397755-UTR-P-wetherbeei_contig1672:5492..58261683186095.6397755-UTR-P-wetherbeei_contig1672:5492..5826Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1672 5493..5826 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186095.630189-CDS-P-wetherbeei_contig1672:4313..54921683186095.630189-CDS-P-wetherbeei_contig1672:4313..5492Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1672 4314..5492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1672.4.1prot_P-wetherbeei_contig1672.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1672 4314..5492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1672.4.1

>prot_P-wetherbeei_contig1672.4.1 ID=prot_P-wetherbeei_contig1672.4.1|Name=mRNA_P-wetherbeei_contig1672.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=393bp
MTAVWAKRKAKASDPDAMDLLAKVIRLNPDSYSLWNYRREAVLSLLSQIG
DEQPANGAAVAGIYQTELSLAAAAIRRNPKSYATWHHRRWALERGLEAVG
GADALDRELELCTQLLELDARNFHCWRHRKWAVRLRGLPVAEDFAFTTGK
IAQNFSNYSAFHHRSELLPFVAAERGSQEGRWQLLAEELDMAHQAMYTEP
ADQSAWWYHQFLIRWAGAGCPVAASPAPAPAAAAAADVPLAATSGPTTAF
GAEAKDGNGGSSGDNCGDENSSGGEPEDGAGTVERYEAVLHAEAACMREL
VELDDGGKWPTLTLLSLLLLLSKRAQAARSAAAGSDGGGGCGGGGGDISC
GAAAGTAGAAGAERERKREWRQLQMARWQLRKKQHGRRSAPS*
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mRNA from alignment at P-wetherbeei_contig1672:4245..5826+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1672.4.1 ID=mRNA_P-wetherbeei_contig1672.4.1|Name=mRNA_P-wetherbeei_contig1672.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1582bp|location=Sequence derived from alignment at P-wetherbeei_contig1672:4245..5826+ (Phaeothamnion wetherbeei SAG_119_79)
AGCGGCGCGCCCAGGACGGCCGAGGAGATTGATGCAGTCAACGCCAAAGC GGCGAGCTATACGAAGATCATGACTGCAGTCTGGGCGAAGCGGAAAGCAA AAGCGAGCGATCCCGACGCGATGGACTTGCTGGCGAAGGTAATTCGCCTC AATCCGGACAGCTACAGCCTGTGGAACTACAGACGAGAGGCGGTGCTCAG CCTGCTGAGCCAGATCGGTGACGAGCAGCCCGCAAACGGTGCCGCTGTCG CAGGCATCTATCAAACGGAGCTGTCGCTGGCCGCCGCCGCAATCAGACGC AATCCAAAATCGTACGCCACGTGGCACCATCGGCGCTGGGCGCTGGAGCG CGGGCTCGAAGCAGTCGGCGGCGCCGATGCCCTAGACCGCGAACTGGAGC TCTGCACCCAACTGCTCGAGCTCGACGCTCGCAACTTCCACTGCTGGCGG CACCGCAAATGGGCGGTGCGCCTGCGGGGCCTGCCAGTGGCAGAAGATTT TGCCTTTACCACCGGGAAGATTGCACAAAACTTTAGTAACTACAGTGCGT TCCACCACCGAAGCGAGCTCCTTCCCTTTGTCGCGGCCGAGCGCGGCTCG CAGGAGGGCCGCTGGCAGCTGCTGGCGGAGGAGCTCGACATGGCCCACCA GGCCATGTACACGGAGCCCGCCGACCAGAGCGCCTGGTGGTACCACCAGT TCCTCATCCGGTGGGCCGGTGCCGGCTGCCCAGTGGCGGCGTCACCTGCA CCGGCACCGGCGGCTGCTGCCGCTGCAGATGTGCCCTTAGCTGCTACATC AGGACCCACCACAGCCTTCGGCGCCGAAGCAAAAGACGGGAACGGCGGCA GCAGCGGCGACAATTGCGGCGATGAAAATAGCAGCGGCGGCGAACCGGAG GACGGCGCCGGCACCGTGGAGCGTTACGAGGCCGTGCTTCACGCCGAGGC GGCCTGCATGCGGGAGCTGGTGGAGCTGGACGACGGCGGCAAATGGCCGA CACTGACGCTGCTGTCCCTGCTGCTGTTGCTGAGCAAGCGCGCCCAGGCC GCCCGCTCGGCGGCAGCCGGCAGCGACGGCGGCGGCGGCTGCGGCGGCGG CGGCGGCGATATTAGCTGTGGCGCAGCGGCGGGAACGGCGGGAGCGGCGG GAGCGGAGCGGGAGCGGAAGCGGGAGTGGCGTCAGCTGCAGATGGCACGG TGGCAGCTGCGAAAGAAGCAGCATGGGCGACGGAGTGCGCCGAGCTGACG AGACGACTCTGCGAAGTCGACCCGATGCATACGAACCGGTATAAATGCAT GCTTCGGCCGTGATGGTTTTTCCTCCAGAATTGGCGGAAGGTAACCCTGC GCTCTTGGAGCGACGACGCAACCACCACGCTGCGACGACGTTCATGACCG CCAAATTCTCTTCAGTTCAGCGTTTGGTGTCAGGTTTACTGCGTCAGGGT TACTGTGATAGGAGATGACAAAACACCCAGGCAAGAAGCTGTCTCTAGGA GGTGAAGTGTGATTTGCGCTTTGCTTGCTGTATATCCCCCAGGTCATCCG CCTATGTTCTGCCTCCCCACCGCTACTCGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1672:4245..5826+

>mRNA_P-wetherbeei_contig1672.4.1 ID=mRNA_P-wetherbeei_contig1672.4.1|Name=mRNA_P-wetherbeei_contig1672.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1179bp|location=Sequence derived from alignment at P-wetherbeei_contig1672:4245..5826+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACTGCAGTCTGGGCGAAGCGGAAAGCAAAAGCGAGCGATCCCGACGC
GATGGACTTGCTGGCGAAGGTAATTCGCCTCAATCCGGACAGCTACAGCC
TGTGGAACTACAGACGAGAGGCGGTGCTCAGCCTGCTGAGCCAGATCGGT
GACGAGCAGCCCGCAAACGGTGCCGCTGTCGCAGGCATCTATCAAACGGA
GCTGTCGCTGGCCGCCGCCGCAATCAGACGCAATCCAAAATCGTACGCCA
CGTGGCACCATCGGCGCTGGGCGCTGGAGCGCGGGCTCGAAGCAGTCGGC
GGCGCCGATGCCCTAGACCGCGAACTGGAGCTCTGCACCCAACTGCTCGA
GCTCGACGCTCGCAACTTCCACTGCTGGCGGCACCGCAAATGGGCGGTGC
GCCTGCGGGGCCTGCCAGTGGCAGAAGATTTTGCCTTTACCACCGGGAAG
ATTGCACAAAACTTTAGTAACTACAGTGCGTTCCACCACCGAAGCGAGCT
CCTTCCCTTTGTCGCGGCCGAGCGCGGCTCGCAGGAGGGCCGCTGGCAGC
TGCTGGCGGAGGAGCTCGACATGGCCCACCAGGCCATGTACACGGAGCCC
GCCGACCAGAGCGCCTGGTGGTACCACCAGTTCCTCATCCGGTGGGCCGG
TGCCGGCTGCCCAGTGGCGGCGTCACCTGCACCGGCACCGGCGGCTGCTG
CCGCTGCAGATGTGCCCTTAGCTGCTACATCAGGACCCACCACAGCCTTC
GGCGCCGAAGCAAAAGACGGGAACGGCGGCAGCAGCGGCGACAATTGCGG
CGATGAAAATAGCAGCGGCGGCGAACCGGAGGACGGCGCCGGCACCGTGG
AGCGTTACGAGGCCGTGCTTCACGCCGAGGCGGCCTGCATGCGGGAGCTG
GTGGAGCTGGACGACGGCGGCAAATGGCCGACACTGACGCTGCTGTCCCT
GCTGCTGTTGCTGAGCAAGCGCGCCCAGGCCGCCCGCTCGGCGGCAGCCG
GCAGCGACGGCGGCGGCGGCTGCGGCGGCGGCGGCGGCGATATTAGCTGT
GGCGCAGCGGCGGGAACGGCGGGAGCGGCGGGAGCGGAGCGGGAGCGGAA
GCGGGAGTGGCGTCAGCTGCAGATGGCACGGTGGCAGCTGCGAAAGAAGC
AGCATGGGCGACGGAGTGCGCCGAGCTGA
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