mRNA_P-wetherbeei_contig16715.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16715.2.1
Unique NamemRNA_P-wetherbeei_contig16715.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16715.2.1 vs. uniprot
Match: K6YH63_9ALTE (GST-like protein n=1 Tax=Aliiglaciecola lipolytica E3 TaxID=1127673 RepID=K6YH63_9ALTE)

HSP 1 Score: 136 bits (343), Expect = 4.960e-38
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 1
Query:    1 IADMAIWPWYGALVKGTLYEAGEFIEAHSYTNVIRWTDAIAERAAVKRGRIVNRTWGAPESQLPERHDASDFKSKT 228
            IAD+A WPWYGALVKG +YEA EFIEAH+YTNVIRWTD IA+R AVKRGR+VNRTWG PESQL ERHDASDF +KT
Sbjct:  206 IADIATWPWYGALVKGLVYEAAEFIEAHTYTNVIRWTDQIAQRPAVKRGRMVNRTWGEPESQLHERHDASDFDTKT 281          
BLAST of mRNA_P-wetherbeei_contig16715.2.1 vs. uniprot
Match: UPI000379F7D8 (glutathione S-transferase C-terminal domain-containing protein n=1 Tax=Henriciella marina TaxID=453851 RepID=UPI000379F7D8)

HSP 1 Score: 130 bits (328), Expect = 7.050e-38
Identity = 59/76 (77.63%), Postives = 67/76 (88.16%), Query Frame = 1
Query:    1 IADMAIWPWYGALVKGTLYEAGEFIEAHSYTNVIRWTDAIAERAAVKRGRIVNRTWGAPESQLPERHDASDFKSKT 228
            IADMAIWPWYGALVKG +YEAGEF++ H Y NVIRWTD +AERAAV+RGR+VNRT+G P SQL ERHDASDF +KT
Sbjct:   27 IADMAIWPWYGALVKGIVYEAGEFLQVHEYKNVIRWTDQLAERAAVQRGRMVNRTFGDPSSQLRERHDASDFDTKT 102          
BLAST of mRNA_P-wetherbeei_contig16715.2.1 vs. uniprot
Match: A0A081B6A1_9HYPH (Glutathione S-transferase family protein n=1 Tax=Tepidicaulis marinus TaxID=1333998 RepID=A0A081B6A1_9HYPH)

HSP 1 Score: 133 bits (335), Expect = 8.210e-37
Identity = 59/76 (77.63%), Postives = 64/76 (84.21%), Query Frame = 1
Query:    1 IADMAIWPWYGALVKGTLYEAGEFIEAHSYTNVIRWTDAIAERAAVKRGRIVNRTWGAPESQLPERHDASDFKSKT 228
            IADMAIWPWYGAL KG LYEAGEF+  H Y NVIRWTD ++ER AVKRGR+VNR WG P SQLPERHDASDF +KT
Sbjct:  205 IADMAIWPWYGALAKGLLYEAGEFLSVHEYKNVIRWTDQLSERPAVKRGRMVNRVWGEPASQLPERHDASDFDTKT 280          
BLAST of mRNA_P-wetherbeei_contig16715.2.1 vs. uniprot
Match: A0A553L3B4_9ALTE (Glutathione-dependent disulfide-bond oxidoreductase n=1 Tax=Aliiglaciecola sp. M165 TaxID=2593649 RepID=A0A553L3B4_9ALTE)

HSP 1 Score: 133 bits (335), Expect = 9.010e-37
Identity = 59/76 (77.63%), Postives = 67/76 (88.16%), Query Frame = 1
Query:    1 IADMAIWPWYGALVKGTLYEAGEFIEAHSYTNVIRWTDAIAERAAVKRGRIVNRTWGAPESQLPERHDASDFKSKT 228
            IADMA+WPWYGALVK  +YEA EFIEAH+YTNV+RWTD IA+R  VKRGR+VNRTWG PE+QL ERHDASDF +KT
Sbjct:  207 IADMAVWPWYGALVKNKVYEAAEFIEAHTYTNVLRWTDEIAQREPVKRGRMVNRTWGEPETQLHERHDASDFDTKT 282          
BLAST of mRNA_P-wetherbeei_contig16715.2.1 vs. uniprot
Match: A0A2N3DZH6_9PROT (Glutathione-dependent disulfide-bond oxidoreductase (Fragment) n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12 TaxID=2013658 RepID=A0A2N3DZH6_9PROT)

HSP 1 Score: 129 bits (324), Expect = 1.800e-36
Identity = 58/73 (79.45%), Postives = 62/73 (84.93%), Query Frame = 1
Query:    1 IADMAIWPWYGALVKGTLYEAGEFIEAHSYTNVIRWTDAIAERAAVKRGRIVNRTWGAPESQLPERHDASDFK 219
            +ADMAIWPWYGAL KG LY A EF+  H Y +V RWTDAIAER AVKRGRIVNRTWG PESQLPERHDASDF+
Sbjct:   93 VADMAIWPWYGALAKGLLYGAAEFLSVHEYKHVNRWTDAIAERPAVKRGRIVNRTWGEPESQLPERHDASDFE 165          
BLAST of mRNA_P-wetherbeei_contig16715.2.1 vs. uniprot
Match: A0A139DG11_9GAMM (GST-like protein n=1 Tax=Marinobacter sp. T13-3 TaxID=1794906 RepID=A0A139DG11_9GAMM)

HSP 1 Score: 126 bits (317), Expect = 1.850e-36
Identity = 55/76 (72.37%), Postives = 66/76 (86.84%), Query Frame = 1
Query:    1 IADMAIWPWYGALVKGTLYEAGEFIEAHSYTNVIRWTDAIAERAAVKRGRIVNRTWGAPESQLPERHDASDFKSKT 228
            IADMAIWPWYGA+VK  +Y+A EF+EAH+YTNVIRW D IA+R AVKRGR+VN+TWG P +QL ERHDASDF+ +T
Sbjct:    7 IADMAIWPWYGAVVKNIVYDAAEFLEAHTYTNVIRWADEIAQRPAVKRGRMVNKTWGEPATQLHERHDASDFELRT 82          
BLAST of mRNA_P-wetherbeei_contig16715.2.1 vs. uniprot
Match: A0A359LWC9_9BACT (Glutathione-dependent disulfide-bond oxidoreductase (Fragment) n=1 Tax=Bryobacterales bacterium TaxID=2026791 RepID=A0A359LWC9_9BACT)

HSP 1 Score: 126 bits (317), Expect = 3.060e-36
Identity = 54/76 (71.05%), Postives = 64/76 (84.21%), Query Frame = 1
Query:    1 IADMAIWPWYGALVKGTLYEAGEFIEAHSYTNVIRWTDAIAERAAVKRGRIVNRTWGAPESQLPERHDASDFKSKT 228
            IAD+A+WPWYGAL KG LYEAGEF++ H+YTNV+RW D IA+R A +RGR VNRTWG P SQL ERHDASDF ++T
Sbjct:   24 IADIAVWPWYGALAKGQLYEAGEFLQVHTYTNVVRWADRIAQRPAAQRGRKVNRTWGEPSSQLHERHDASDFDTRT 99          
BLAST of mRNA_P-wetherbeei_contig16715.2.1 vs. uniprot
Match: A0A7Y3M7U8_9DELT (Glutathione-dependent disulfide-bond oxidoreductase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y3M7U8_9DELT)

HSP 1 Score: 131 bits (330), Expect = 5.280e-36
Identity = 60/76 (78.95%), Postives = 67/76 (88.16%), Query Frame = 1
Query:    1 IADMAIWPWYGALVKGTLYEAGEFIEAHSYTNVIRWTDAIAERAAVKRGRIVNRTWGAPESQLPERHDASDFKSKT 228
            IADMAIWPWYGALV G LYEAGEF++A SY +V RWT  IAER AVKRGR+VNRTWG PESQLPERHDASDF+++T
Sbjct:  207 IADMAIWPWYGALVSGLLYEAGEFLDAGSYAHVNRWTKNIAERPAVKRGRMVNRTWGKPESQLPERHDASDFETRT 282          
BLAST of mRNA_P-wetherbeei_contig16715.2.1 vs. uniprot
Match: A0A2E5BTQ9_9HYPH (Glutathione-dependent disulfide-bond oxidoreductase n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2E5BTQ9_9HYPH)

HSP 1 Score: 131 bits (329), Expect = 6.490e-36
Identity = 58/76 (76.32%), Postives = 65/76 (85.53%), Query Frame = 1
Query:    1 IADMAIWPWYGALVKGTLYEAGEFIEAHSYTNVIRWTDAIAERAAVKRGRIVNRTWGAPESQLPERHDASDFKSKT 228
            IADMAIWPWYG LVKG LYEAGEFIEAH+Y NVIRW D + ER AV+RGR+VNR WG P++QL ERHDASDF +KT
Sbjct:  205 IADMAIWPWYGGLVKGVLYEAGEFIEAHTYKNVIRWADQLGERKAVQRGRMVNRVWGEPDTQLMERHDASDFDTKT 280          
BLAST of mRNA_P-wetherbeei_contig16715.2.1 vs. uniprot
Match: A0A8B6LZ48_9BURK (Disulfide-bond oxidoreductase YghU n=2 Tax=unclassified Variovorax TaxID=663243 RepID=A0A8B6LZ48_9BURK)

HSP 1 Score: 130 bits (328), Expect = 1.030e-35
Identity = 55/76 (72.37%), Postives = 68/76 (89.47%), Query Frame = 1
Query:    1 IADMAIWPWYGALVKGTLYEAGEFIEAHSYTNVIRWTDAIAERAAVKRGRIVNRTWGAPESQLPERHDASDFKSKT 228
            IADMA+WPWYG LVKG LYEAGEF++ H YT+V+RWTDAIA+R AV+RGR+VNR+WG P SQL ERHDA+DF+++T
Sbjct:  208 IADMAVWPWYGTLVKGQLYEAGEFLQVHEYTHVLRWTDAIAQRPAVRRGRMVNRSWGQPSSQLHERHDATDFETRT 283          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16715.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K6YH63_9ALTE4.960e-3881.58GST-like protein n=1 Tax=Aliiglaciecola lipolytica... [more]
UPI000379F7D87.050e-3877.63glutathione S-transferase C-terminal domain-contai... [more]
A0A081B6A1_9HYPH8.210e-3777.63Glutathione S-transferase family protein n=1 Tax=T... [more]
A0A553L3B4_9ALTE9.010e-3777.63Glutathione-dependent disulfide-bond oxidoreductas... [more]
A0A2N3DZH6_9PROT1.800e-3679.45Glutathione-dependent disulfide-bond oxidoreductas... [more]
A0A139DG11_9GAMM1.850e-3672.37GST-like protein n=1 Tax=Marinobacter sp. T13-3 Ta... [more]
A0A359LWC9_9BACT3.060e-3671.05Glutathione-dependent disulfide-bond oxidoreductas... [more]
A0A7Y3M7U8_9DELT5.280e-3678.95Glutathione-dependent disulfide-bond oxidoreductas... [more]
A0A2E5BTQ9_9HYPH6.490e-3676.32Glutathione-dependent disulfide-bond oxidoreductas... [more]
A0A8B6LZ48_9BURK1.030e-3572.37Disulfide-bond oxidoreductase YghU n=2 Tax=unclass... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16715contigP-wetherbeei_contig16715:1187..1417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1127673.GLIP_3344
Preferred nameyghU
PFAMsGST_C,GST_C_2,GST_N
Model size231
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K11209
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.79e-36
EggNOG OGsCOG0625@1|root,COG0625@2|Bacteria,1MUN3@1224|Proteobacteria,1RMF7@1236|Gammaproteobacteria,464IW@72275|Alteromonadaceae
DescriptionGlutathione S-transferase
Cds size222
COG categoryO
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186095.4480274-CDS-P-wetherbeei_contig16715:1186..14081683186095.4480274-CDS-P-wetherbeei_contig16715:1186..1408Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16715 1187..1408 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186095.4568417-UTR-P-wetherbeei_contig16715:1408..14171683186095.4568417-UTR-P-wetherbeei_contig16715:1408..1417Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16715 1409..1417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16715.2.1prot_P-wetherbeei_contig16715.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16715 1187..1408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16715.2.1

>prot_P-wetherbeei_contig16715.2.1 ID=prot_P-wetherbeei_contig16715.2.1|Name=mRNA_P-wetherbeei_contig16715.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=74bp
MAIWPWYGALVKGTLYEAGEFIEAHSYTNVIRWTDAIAERAAVKRGRIVN
RTWGAPESQLPERHDASDFKSKT*
back to top

mRNA from alignment at P-wetherbeei_contig16715:1187..1417-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16715.2.1 ID=mRNA_P-wetherbeei_contig16715.2.1|Name=mRNA_P-wetherbeei_contig16715.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig16715:1187..1417- (Phaeothamnion wetherbeei SAG_119_79)
ATCGCCGATATGGCCATCTGGCCCTGGTACGGCGCGCTCGTCAAAGGCAC GCTCTATGAGGCGGGCGAATTTATCGAGGCGCATAGCTACACCAATGTTA TCCGGTGGACGGACGCCATCGCGGAACGTGCGGCGGTCAAACGCGGCCGC ATCGTGAACCGCACCTGGGGCGCGCCGGAAAGCCAGCTTCCAGAACGCCA CGACGCCAGCGATTTCAAGAGCAAGACCTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig16715:1187..1417-

>mRNA_P-wetherbeei_contig16715.2.1 ID=mRNA_P-wetherbeei_contig16715.2.1|Name=mRNA_P-wetherbeei_contig16715.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig16715:1187..1417- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCATCTGGCCCTGGTACGGCGCGCTCGTCAAAGGCACGCTCTATGA
GGCGGGCGAATTTATCGAGGCGCATAGCTACACCAATGTTATCCGGTGGA
CGGACGCCATCGCGGAACGTGCGGCGGTCAAACGCGGCCGCATCGTGAAC
CGCACCTGGGGCGCGCCGGAAAGCCAGCTTCCAGAACGCCACGACGCCAG
CGATTTCAAGAGCAAGACCTGA
back to top