mRNA_P-wetherbeei_contig1670.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1670.1.1
Unique NamemRNA_P-wetherbeei_contig1670.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1670.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1670contigP-wetherbeei_contig1670:2926..5972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2073
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionArmadillo-like protein kinase
Ec32 orthologEc-10_004900.1
Cds size1620
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1670.1.1prot_P-wetherbeei_contig1670.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1670 3260..5853 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186094.9262903-UTR-P-wetherbeei_contig1670:2925..32591683186094.9262903-UTR-P-wetherbeei_contig1670:2925..3259Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1670 2926..3259 -
1683186095.0002766-UTR-P-wetherbeei_contig1670:5853..59721683186095.0002766-UTR-P-wetherbeei_contig1670:5853..5972Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1670 5854..5972 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186094.9347157-CDS-P-wetherbeei_contig1670:3259..34871683186094.9347157-CDS-P-wetherbeei_contig1670:3259..3487Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1670 3260..3487 -
1683186094.9448013-CDS-P-wetherbeei_contig1670:3777..38581683186094.9448013-CDS-P-wetherbeei_contig1670:3777..3858Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1670 3778..3858 -
1683186094.955889-CDS-P-wetherbeei_contig1670:4051..41601683186094.955889-CDS-P-wetherbeei_contig1670:4051..4160Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1670 4052..4160 -
1683186094.968082-CDS-P-wetherbeei_contig1670:4382..48041683186094.968082-CDS-P-wetherbeei_contig1670:4382..4804Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1670 4383..4804 -
1683186094.9797518-CDS-P-wetherbeei_contig1670:4965..56741683186094.9797518-CDS-P-wetherbeei_contig1670:4965..5674Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1670 4966..5674 -
1683186094.989234-CDS-P-wetherbeei_contig1670:5782..58531683186094.989234-CDS-P-wetherbeei_contig1670:5782..5853Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1670 5783..5853 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1670.1.1

>prot_P-wetherbeei_contig1670.1.1 ID=prot_P-wetherbeei_contig1670.1.1|Name=mRNA_P-wetherbeei_contig1670.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=540bp
MADEEAELAALESAALDVLSSDAMDDGPPPRLTPNASINPNALKAVKLKL
RTRKLPVVLDAPVRRGSYGNRASENANDPGCEKSCSTPMTTSSPSPPPGA
ARRGLQFIGKAASVSSVLGRTLGGGKAQSPRRPVSTRRSKKSSGVPAGSS
LAYPAMVAQAIRNGTLTDAEVLAAVPELCLKGGEVAQSALGAAGACARVV
EAMRAQPKEARTQELGCDAVIHLAISEANNAALGAAGACEAVIKALRVHS
DDRDVVYHAMGAICYLADDSDNRERLAAFGALEATMSTCAAYSFDAEMQE
WCLRSVWEVSSAKFSEAALVLGNAGAVEAVVAAMRAFEGNADVAECGCGA
LAALATEDANVVRVEASGGIEAVVRAMAAAAAASDGGEPQVQIQGCRALC
SFAGSETFTKGAIAAAGGCEACVFTLNAFPDDVAVQQWGCRAVCMLASIS
GANKVALGAAGACQAVCRAMERYPRDEELVEEACAAIHNLAGDEQNRSAF
HACAPNDAIELLKRAQAAFPGNREACKWAKKAFLRLVEL*
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mRNA from alignment at P-wetherbeei_contig1670:2926..5972-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1670.1.1 ID=mRNA_P-wetherbeei_contig1670.1.1|Name=mRNA_P-wetherbeei_contig1670.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3047bp|location=Sequence derived from alignment at P-wetherbeei_contig1670:2926..5972- (Phaeothamnion wetherbeei SAG_119_79)
AACGGTTCGAACGCCGCGCCGTGCGCTGCAGCACACGCGATTTCATTTCG
CCCAAGTTCACTCCTCAGCCAGACCCCGCACGACCCTCACGGCTGCCACA
AAACGACTCTTCTCGCGCGATGGCCGACGAGGAAGCGGAACTCGCAGCTT
TGGAGAGCGCAGCGCTTGACGTGTTGAGTAGCGATGCCATGTGAGTTTCT
GATGCTCTCATAAGCGACGCTTGCCTGCAATTTGCTTTAAATTGATCAAA
TGTCCGTTGCCCACGCAACATTTCCCTTTCGCATCACCGAAACGTCAGGG
ATGACGGTCCGCCGCCGCGGCTTACTCCTAACGCATCGATTAATCCAAAC
GCTCTAAAAGCTGTCAAGTTAAAGCTTCGAACACGGAAATTGCCCGTGGT
CTTGGATGCACCGGTACGAAGAGGAAGTTATGGAAATCGCGCCTCCGAAA
ACGCCAATGATCCCGGCTGCGAGAAGAGCTGCTCGACACCGATGACGACG
TCATCACCATCGCCGCCACCGGGAGCGGCGAGGCGCGGCCTGCAGTTCAT
CGGAAAAGCTGCGAGCGTCAGCTCCGTGTTGGGGAGAACTCTCGGCGGCG
GCAAGGCACAATCGCCGCGCCGCCCGGTCAGCACGCGTCGCTCGAAAAAG
AGCAGCGGCGTCCCGGCCGGCTCATCCCTCGCTTACCCGGCCATGGTGGC
CCAAGCCATCCGCAACGGGACGTTGACGGATGCCGAAGTGCTCGCCGCGG
TCCCCGAACTCTGTCTGAAAGGCGGTGAGGTCGCGCAGAGCGCACTCGGG
GCCGCCGGCGCCTGCGCGCGCGTCGTGGAGGCGATGCGGGCCCAGCCGAA
GGAGGCGCGGACGCAGGAGCTCGGCTGCGACGCAGTGATCCACCTGGCCA
TCAGCGAGGCCAACAACGCGGCTTTGGGGGCGGCCGGCGCGTGCGAGGCG
GTCATCAAGGCGCTCAGGGTGCATTCAGACGACAGAGACGTCGTCTACCA
CGCCATGGTGAGGCGGAAGGAAGCGGGTGATGGGAACGATGGAAAAGAAG
TCAGCCCTTGCTCTCACCGGGACGGCCAGGCAAACCATGCAAATGCGCCT
TGCCATGCTATCCACCAGCCTTGCTGACTTTCACGCTCCTCCGCCGCGGA
TGTCTCTTCTGTTTGCAGGGCGCCATCTGTTACCTGGCAGATGACTCGGA
CAACCGTGAGCGCCTCGCCGCCTTTGGCGCCCTGGAGGCGACCATGTCCA
CCTGCGCTGCCTACTCCTTCGATGCGGAGATGCAGGAATGGTGCCTGCGA
TCTGTATGGGAGGTCAGCTCGGCAAAGTTTTCGGAAGCGGCGCTTGTCTT
GGGAAACGCTGGCGCCGTCGAAGCGGTGGTGGCCGCCATGCGGGCCTTCG
AGGGAAACGCCGACGTCGCCGAGTGCGGCTGCGGTGCGCTGGCGGCGTTG
GCGACGGAGGACGCCAACGTGGTGCGCGTGGAGGCGAGCGGCGGCATCGA
GGCTGTGGTGCGGGCGATGGCGGCGGCCGCGGCGGCGAGCGACGGGGGAG
AGCCGCAAGTCCAGATACAAGGCTGCAGGGCGCTGTGCAGGTGGGCGTTT
GCATGCCCTTAGTTTCTGTGCCTGCTCTTTTGCATGCTCTGAGGGTTTGT
TTGTATTTCTCTGGATTGCCTGGGACAAGAGGAAAGCAGCTGACGGCAAA
GTTTTCCGGTTAGAAAGCTGTTGTGCCCGCCCGCCGATTCTTATTTGCTG
CCTTCCTTACTCTTTTCGTCCTACATCCTCTCGTGTATTGGTTGCGCGGC
CTCAATTGTCAGCTTTGCGGGGAGCGAAACATTCACCAAAGGAGCCATCG
CGGCGGCCGGAGGATGCGAAGCGTGCGTTTTTACGCTCAACGCTTTCCCA
GATGATGTGGCGGTGCAGCAGGTGAATCTGGCGGCTTTTGTAGGCTCTGC
GGCGCTTACCAATATCCCTTCCACACCCAATCATGGACTTTATTTGCTCT
CCTTAACCTGTCTCGAAGCCAACCAGTCGCCAGGCCTCTCTCTCTCCGTG
ACGCTGTGACTGCCGCCGCGCCTGATTCCGGCGGTTCCTCCCGTTAACGT
ATTTCCTTTTTCAGTGGGGCTGCCGTGCCGTCTGCATGCTGGCCTCCATC
AGCGGCGCCAATAAAGTTGCCCTCGGCGCAGCGGGGGCGTGCCAGGTAAG
GTTTTCAATAACCAGACGGAAAACTGAATCACATCCTCTTTTGGGGGCCC
CTTCATTTATATCTTTCATGCAGTTCTTGATCGCCTGTTGTTTCGCAATG
CAAACAAACGGAAAAATTGTTGGGCCAAAGATGCGAACCGAAACTGAATA
TCATATTGCTGTGTGTCGTGCTCAGTGCAGCTTTCTACACGCTCTTCCGC
GGTTCTGTTTCAAGTGTTGAATTTTGGTGGTCTTGGCCCGGGTTTTTTAC
AAAGCGATCTCTTTTATTCCTTCTCCATTTTCCAGGCCGTCTGCAGGGCG
ATGGAGCGATACCCGCGGGACGAAGAGCTGGTGGAGGAGGCGTGCGCCGC
CATCCACAACTTGGCGGGCGACGAGCAAAACCGCAGCGCTTTCCACGCTT
GCGCGCCGAACGACGCCATCGAGCTGCTGAAGCGGGCGCAGGCGGCGTTT
CCGGGCAACCGAGAGGCCTGCAAGTGGGCAAAAAAGGCCTTCTTGCGGCT
AGTGGAGCTCTGATATGTGCCGAAGCTTTTCTTCAAACGAATTTTGGGAG
TTGGACAGGGGTTTTTCCGTATTATTAGCTGTTGATGCTTCTCTACTGAA
GGTTTAACTTCCCAAGATGGGAAAGGATTGTGTGAGGCGACAAGGGGCCG
GTGCGGCTCCGTTCTAAGTGCATGCGGAGTCCGCAGCCAGTGTTGTGTGC
TTTGGCGGCACAATACAGCGCATCGCTGCACCTTACTACATTAAGGCGCG
ATATGAAGGGCATGAGCAGCAGGTGTGGGAAGTGTTAGAGCTTACCCTCA
ATTTCGATAGTAGATTTGTTCATCACCTAACAGAGAAAACGATATCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1670:2926..5972-

>mRNA_P-wetherbeei_contig1670.1.1 ID=mRNA_P-wetherbeei_contig1670.1.1|Name=mRNA_P-wetherbeei_contig1670.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1620bp|location=Sequence derived from alignment at P-wetherbeei_contig1670:2926..5972- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGACGAGGAAGCGGAACTCGCAGCTTTGGAGAGCGCAGCGCTTGA
CGTGTTGAGTAGCGATGCCATGGATGACGGTCCGCCGCCGCGGCTTACTC
CTAACGCATCGATTAATCCAAACGCTCTAAAAGCTGTCAAGTTAAAGCTT
CGAACACGGAAATTGCCCGTGGTCTTGGATGCACCGGTACGAAGAGGAAG
TTATGGAAATCGCGCCTCCGAAAACGCCAATGATCCCGGCTGCGAGAAGA
GCTGCTCGACACCGATGACGACGTCATCACCATCGCCGCCACCGGGAGCG
GCGAGGCGCGGCCTGCAGTTCATCGGAAAAGCTGCGAGCGTCAGCTCCGT
GTTGGGGAGAACTCTCGGCGGCGGCAAGGCACAATCGCCGCGCCGCCCGG
TCAGCACGCGTCGCTCGAAAAAGAGCAGCGGCGTCCCGGCCGGCTCATCC
CTCGCTTACCCGGCCATGGTGGCCCAAGCCATCCGCAACGGGACGTTGAC
GGATGCCGAAGTGCTCGCCGCGGTCCCCGAACTCTGTCTGAAAGGCGGTG
AGGTCGCGCAGAGCGCACTCGGGGCCGCCGGCGCCTGCGCGCGCGTCGTG
GAGGCGATGCGGGCCCAGCCGAAGGAGGCGCGGACGCAGGAGCTCGGCTG
CGACGCAGTGATCCACCTGGCCATCAGCGAGGCCAACAACGCGGCTTTGG
GGGCGGCCGGCGCGTGCGAGGCGGTCATCAAGGCGCTCAGGGTGCATTCA
GACGACAGAGACGTCGTCTACCACGCCATGGGCGCCATCTGTTACCTGGC
AGATGACTCGGACAACCGTGAGCGCCTCGCCGCCTTTGGCGCCCTGGAGG
CGACCATGTCCACCTGCGCTGCCTACTCCTTCGATGCGGAGATGCAGGAA
TGGTGCCTGCGATCTGTATGGGAGGTCAGCTCGGCAAAGTTTTCGGAAGC
GGCGCTTGTCTTGGGAAACGCTGGCGCCGTCGAAGCGGTGGTGGCCGCCA
TGCGGGCCTTCGAGGGAAACGCCGACGTCGCCGAGTGCGGCTGCGGTGCG
CTGGCGGCGTTGGCGACGGAGGACGCCAACGTGGTGCGCGTGGAGGCGAG
CGGCGGCATCGAGGCTGTGGTGCGGGCGATGGCGGCGGCCGCGGCGGCGA
GCGACGGGGGAGAGCCGCAAGTCCAGATACAAGGCTGCAGGGCGCTGTGC
AGCTTTGCGGGGAGCGAAACATTCACCAAAGGAGCCATCGCGGCGGCCGG
AGGATGCGAAGCGTGCGTTTTTACGCTCAACGCTTTCCCAGATGATGTGG
CGGTGCAGCAGTGGGGCTGCCGTGCCGTCTGCATGCTGGCCTCCATCAGC
GGCGCCAATAAAGTTGCCCTCGGCGCAGCGGGGGCGTGCCAGGCCGTCTG
CAGGGCGATGGAGCGATACCCGCGGGACGAAGAGCTGGTGGAGGAGGCGT
GCGCCGCCATCCACAACTTGGCGGGCGACGAGCAAAACCGCAGCGCTTTC
CACGCTTGCGCGCCGAACGACGCCATCGAGCTGCTGAAGCGGGCGCAGGC
GGCGTTTCCGGGCAACCGAGAGGCCTGCAAGTGGGCAAAAAAGGCCTTCT
TGCGGCTAGTGGAGCTCTGA
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