mRNA_P-wetherbeei_contig1669.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1669.1.1
Unique NamemRNA_P-wetherbeei_contig1669.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1669.1.1 vs. uniprot
Match: D7FV95_ECTSI (DUF1995 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV95_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 7.070e-29
Identity = 108/320 (33.75%), Postives = 158/320 (49.38%), Query Frame = 1 
Query:  298 VRDALERLF-ESDASSKDSPFPRDSIAGAQEAAASVREALLNGKRSMIVDVEVAEFDDQGRGFDPESLTRFVGCLAGGLS-LAGRVKVLMRTPEAATAASDQMQLQALTRGAQ-GIAGLASVAFSSFHAADGAPVGVDARRNAADDAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADNLPETAGVA-EDDAVLVMVGPRGAGDMTALRAVIAAAAGRPVLVFNPRMRQRPLELRAFETVYDLHPYVVVPARRNPRARQNPLSVDR---SATQIYSEAQAAFLPRVVLYRRFPAAWRLVVDADGAGYQEAATFERPP 1236
            VR AL  L  E   + +++PFP  S  GA EA+++ ++ALL GKR +I+DVEV + DD    FD E    F   ++  L+ ++GRVKVL+R    A  A++ +Q +A T+G + GI     ++F SF  A+             DD                                   +   T G+A E++ V +MV PR   D+T LR +I  A GRPV++  PRM   P+E   FETVY L  Y V P   NP+ R   + + R   +   IYSE     +PRV++ R FP  ++L +D DG G+Q   T++  P
Sbjct:   52 VRQALPELEGEGPETKRENPFPTSSDRGALEASSASQQALLAGKRGLIIDVEVRQMDDTHAEFDEEMQIDFATDISKALATVSGRVKVLLRGIHLAEKATEMLQ-KANTKGEEEGIEPRRDISFCSFQMAN------------TDD---------------------------EDDEKSMRDFASTLGLANEEERVFLMVCPRRLVDVTVLREIILVAKGRPVVLITPRMPYMPVETDGFETVYQLKQYNVQPVPTNPKKRIKNVRLTRLGQNQQTIYSEL-GQVIPRVLVTRAFPGDFKLYLDIDGKGFQLEKTYDAKP 330
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1669.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FV95_ECTSI7.070e-2933.75DUF1995 domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1669contigP-wetherbeei_contig1669:239..1876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1444
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_000260.1
Cds size1341
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186094.3673577-UTR-P-wetherbeei_contig1669:238..3041683186094.3673577-UTR-P-wetherbeei_contig1669:238..304Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1669 239..304 +
1683186094.3954744-UTR-P-wetherbeei_contig1669:1839..18761683186094.3954744-UTR-P-wetherbeei_contig1669:1839..1876Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1669 1840..1876 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186094.3777854-CDS-P-wetherbeei_contig1669:304..8411683186094.3777854-CDS-P-wetherbeei_contig1669:304..841Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1669 305..841 +
1683186094.3867774-CDS-P-wetherbeei_contig1669:1035..18391683186094.3867774-CDS-P-wetherbeei_contig1669:1035..1839Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1669 1036..1839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1669.1.1prot_P-wetherbeei_contig1669.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1669 305..1839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1669.1.1

>prot_P-wetherbeei_contig1669.1.1 ID=prot_P-wetherbeei_contig1669.1.1|Name=mRNA_P-wetherbeei_contig1669.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=447bp
MLHLPGGPPALPSSMRFTMHRIVFLLILAILLAWEATPILSPGYCRAATR
TRQRTAILTRHAASGNSGDSQSESTGAVRDALERLFESDASSKDSPFPRD
SIAGAQEAAASVREALLNGKRSMIVDVEVAEFDDQGRGFDPESLTRFVGC
LAGGLSLAGRVKVLMRTPEAATAASDQMQLQALTRGAQGIAGLASVAFSS
FHAADGAPVGVDARRNAADDAAAATATASAAAAAAATAAPSDAEDAADAD
DADADNLPETAGVAEDDAVLVMVGPRGAGDMTALRAVIAAAAGRPVLVFN
PRMRQRPLELRAFETVYDLHPYVVVPARRNPRARQNPLSVDRSATQIYSE
AQAAFLPRVVLYRRFPAAWRLVVDADGAGYQEAATFERPPTAGGVVRAAQ
RVIDRAQRAARAAARELRDPPGERGLLQRRRRAGEHHDDDTGDGGV*
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mRNA from alignment at P-wetherbeei_contig1669:239..1876+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1669.1.1 ID=mRNA_P-wetherbeei_contig1669.1.1|Name=mRNA_P-wetherbeei_contig1669.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1638bp|location=Sequence derived from alignment at P-wetherbeei_contig1669:239..1876+ (Phaeothamnion wetherbeei SAG_119_79)
TTTGGGTAATTTACCCTTCTTTTTTTCACCTCGTCCCAAATTCAGATCTT
TTTGGACGCAAACAATATGCTGCACCTTCCCGGCGGCCCTCCAGCGCTGC
CGAGCAGCATGCGCTTTACCATGCACCGTATTGTCTTTCTGTTGATTCTG
GCGATCCTATTAGCGTGGGAAGCAACGCCCATTCTGTCTCCTGGATACTG
CAGAGCTGCAACACGGACACGACAAAGAACTGCCATCCTTACAAGGCATG
CTGCGTCCGGTAATTCTGGTGATTCGCAATCCGAATCGACGGGAGCCGTG
CGAGACGCTTTGGAAAGACTCTTCGAGAGCGACGCCTCCTCAAAGGACTC
GCCGTTCCCTCGCGACAGCATTGCCGGAGCACAAGAAGCCGCGGCGTCCG
TGCGGGAGGCCTTGCTTAACGGCAAGCGGAGCATGATTGTAGACGTTGAG
GTTGCCGAGTTTGACGATCAGGGACGAGGCTTCGATCCCGAGTCGCTCAC
GCGGTTCGTCGGCTGCCTGGCCGGAGGCCTGTCGCTGGCAGGACGCGTAA
AAGTGCTCATGCGGACGCCGGAGGCGGCGACTGCAGCAAGCGACCAGATG
CAGGTGAACAAACTGAATTGACTAATTAATGGCTTTGCGTAGCGCGACAC
GAGTTCCTGGGTTTGTGAAACTTTATGTTGGTGATCACTTTTAAGGTGGT
TATTGTCCAGATAACATCCATGCTCCGATGCTCTTTGTTCGCATCATTCT
GCTTTTCGAATGTTCGCTTGCTCCGCACGCTCCTGGCTCCTTTCCAGCTC
CAAGCCCTGACGCGTGGCGCTCAGGGCATCGCAGGCCTCGCTTCGGTGGC
ATTCAGCTCCTTCCACGCCGCCGACGGTGCCCCTGTCGGCGTCGACGCTC
GTCGTAACGCCGCGGATGATGCGGCTGCCGCCACCGCCACAGCTTCTGCC
GCCGCTGCCGCCGCTGCCACCGCCGCCCCATCAGATGCAGAGGACGCCGC
CGACGCCGATGACGCCGATGCTGACAATCTGCCAGAGACCGCTGGCGTGG
CAGAGGACGACGCCGTCCTGGTCATGGTCGGGCCGCGTGGCGCCGGTGAC
ATGACAGCGCTGCGGGCTGTCATCGCGGCGGCGGCCGGGCGCCCCGTGCT
GGTCTTCAACCCGCGGATGCGGCAGCGGCCACTGGAGCTGCGCGCCTTCG
AAACCGTCTACGACCTGCACCCGTACGTCGTCGTGCCGGCGCGGCGGAAC
CCGCGGGCGCGGCAGAACCCGTTATCGGTTGACCGGTCCGCGACGCAAAT
TTACTCCGAGGCGCAGGCGGCGTTCCTGCCGCGCGTCGTGCTATACCGCC
GCTTCCCGGCAGCGTGGCGGCTAGTCGTGGACGCCGACGGCGCCGGCTAC
CAAGAGGCAGCGACGTTCGAACGGCCACCGACAGCGGGCGGAGTGGTGCG
GGCGGCGCAGCGCGTCATCGACCGGGCGCAGCGGGCGGCGCGGGCGGCGG
CGCGGGAGCTGCGGGACCCACCGGGAGAGCGCGGGCTATTGCAGCGGCGG
CGGCGTGCGGGGGAACATCATGATGACGACACCGGCGATGGCGGAGTATA
GGGGTAAGGTCAGAAATTGGGTTTCAGCTTACACAGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1669:239..1876+

>mRNA_P-wetherbeei_contig1669.1.1 ID=mRNA_P-wetherbeei_contig1669.1.1|Name=mRNA_P-wetherbeei_contig1669.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1341bp|location=Sequence derived from alignment at P-wetherbeei_contig1669:239..1876+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCACCTTCCCGGCGGCCCTCCAGCGCTGCCGAGCAGCATGCGCTT
TACCATGCACCGTATTGTCTTTCTGTTGATTCTGGCGATCCTATTAGCGT
GGGAAGCAACGCCCATTCTGTCTCCTGGATACTGCAGAGCTGCAACACGG
ACACGACAAAGAACTGCCATCCTTACAAGGCATGCTGCGTCCGGTAATTC
TGGTGATTCGCAATCCGAATCGACGGGAGCCGTGCGAGACGCTTTGGAAA
GACTCTTCGAGAGCGACGCCTCCTCAAAGGACTCGCCGTTCCCTCGCGAC
AGCATTGCCGGAGCACAAGAAGCCGCGGCGTCCGTGCGGGAGGCCTTGCT
TAACGGCAAGCGGAGCATGATTGTAGACGTTGAGGTTGCCGAGTTTGACG
ATCAGGGACGAGGCTTCGATCCCGAGTCGCTCACGCGGTTCGTCGGCTGC
CTGGCCGGAGGCCTGTCGCTGGCAGGACGCGTAAAAGTGCTCATGCGGAC
GCCGGAGGCGGCGACTGCAGCAAGCGACCAGATGCAGCTCCAAGCCCTGA
CGCGTGGCGCTCAGGGCATCGCAGGCCTCGCTTCGGTGGCATTCAGCTCC
TTCCACGCCGCCGACGGTGCCCCTGTCGGCGTCGACGCTCGTCGTAACGC
CGCGGATGATGCGGCTGCCGCCACCGCCACAGCTTCTGCCGCCGCTGCCG
CCGCTGCCACCGCCGCCCCATCAGATGCAGAGGACGCCGCCGACGCCGAT
GACGCCGATGCTGACAATCTGCCAGAGACCGCTGGCGTGGCAGAGGACGA
CGCCGTCCTGGTCATGGTCGGGCCGCGTGGCGCCGGTGACATGACAGCGC
TGCGGGCTGTCATCGCGGCGGCGGCCGGGCGCCCCGTGCTGGTCTTCAAC
CCGCGGATGCGGCAGCGGCCACTGGAGCTGCGCGCCTTCGAAACCGTCTA
CGACCTGCACCCGTACGTCGTCGTGCCGGCGCGGCGGAACCCGCGGGCGC
GGCAGAACCCGTTATCGGTTGACCGGTCCGCGACGCAAATTTACTCCGAG
GCGCAGGCGGCGTTCCTGCCGCGCGTCGTGCTATACCGCCGCTTCCCGGC
AGCGTGGCGGCTAGTCGTGGACGCCGACGGCGCCGGCTACCAAGAGGCAG
CGACGTTCGAACGGCCACCGACAGCGGGCGGAGTGGTGCGGGCGGCGCAG
CGCGTCATCGACCGGGCGCAGCGGGCGGCGCGGGCGGCGGCGCGGGAGCT
GCGGGACCCACCGGGAGAGCGCGGGCTATTGCAGCGGCGGCGGCGTGCGG
GGGAACATCATGATGACGACACCGGCGATGGCGGAGTATAG
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