mRNA_P-wetherbeei_contig16687.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig16687.1.1 vs. uniprot
Match: A0A7S2XYL8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYL8_9STRA) HSP 1 Score: 120 bits (300), Expect = 1.350e-32 Identity = 60/88 (68.18%), Postives = 68/88 (77.27%), Query Frame = 1
Query: 1 LRPGTKEPCNVLLVRVVNILYPVTLDALHQIFVRFGTVEKVVMFDKGSGFQALVQMHSTGQARAAFDAADSQEMYAGCNLLRVGYSSL 264
LRPG+ P NVLLVRV NI YPV LDALH IF RFG V+KVV+FDKGSGFQALVQ S A+ AFD+ D Q+MY CN +RVGYS+L
Sbjct: 57 LRPGSTTPSNVLLVRVSNIFYPVQLDALHTIFSRFGEVQKVVLFDKGSGFQALVQYASEEPAKLAFDSVDLQDMYTNCNTIRVGYSNL 144
BLAST of mRNA_P-wetherbeei_contig16687.1.1 vs. uniprot
Match: A0A6H5KZ42_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ42_9PHAE) HSP 1 Score: 119 bits (297), Expect = 3.080e-29 Identity = 59/89 (66.29%), Postives = 74/89 (83.15%), Query Frame = 1
Query: 1 LRPGTKEPCNVLLVRVVNILYPVTLDALHQIFVRFGTVEKVVMFDKGSGFQALVQMHSTGQARAAFDAADSQEMYAGCNLLRVGYSSLK 267
LRPG ++P NVLLVRV +I++PVT+ AL QIF RFG V+K+VMFDKGSG QALVQM + A +A +AAD QEMY+GCNL+RVGYS+L+
Sbjct: 33 LRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHSAMSAHEAADMQEMYSGCNLIRVGYSNLQ 121
BLAST of mRNA_P-wetherbeei_contig16687.1.1 vs. uniprot
Match: A0A7S3UWL0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWL0_HETAK) HSP 1 Score: 108 bits (269), Expect = 1.120e-25 Identity = 53/88 (60.23%), Postives = 62/88 (70.45%), Query Frame = 1
Query: 1 LRPGTKEPCNVLLVRVVNILYPVTLDALHQIFVRFGTVEKVVMFDKGSGFQALVQMHSTGQARAAFDAADSQEMYAGCNLLRVGYSSL 264
LRPG P NV LVR+ NI YP T+DALH IF RFG V K+V FDKGSG+QAL+Q S A AF A D Q+MY CN +RVG+S+L
Sbjct: 27 LRPGGNVPSNVCLVRISNIFYPPTIDALHTIFRRFGNVIKIVCFDKGSGYQALIQYDSVEAATQAFQAVDMQDMYTNCNTIRVGFSNL 114
BLAST of mRNA_P-wetherbeei_contig16687.1.1 vs. uniprot
Match: A0A4D9D0W9_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0W9_9STRA) HSP 1 Score: 100 bits (249), Expect = 8.610e-23 Identity = 48/87 (55.17%), Postives = 65/87 (74.71%), Query Frame = 1
Query: 1 LRPGTKEPCNVLLVRVVNILYPVTLDALHQIFVRFGTVEKVVMFDKGSGFQALVQMHSTGQARAAFDAADSQEMYAGCNLLRVGYSS 261
LRPGT EP NV+L R+ + L+PVTLDAL+ +F +G V+K+VMF+KG+G QALVQ A+AA++ AD + MY NL+RVGYS+
Sbjct: 273 LRPGTSEPSNVILARITDGLFPVTLDALYTLFSFYGPVQKIVMFNKGAGNQALVQYPDVASAQAAYEQADHRNMYTDSNLIRVGYST 359
BLAST of mRNA_P-wetherbeei_contig16687.1.1 vs. uniprot
Match: L8HLM4_ACACA (HnRNPL/PTB/hephaestus splicing factor subfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HLM4_ACACA) HSP 1 Score: 89.0 bits (219), Expect = 1.020e-18 Identity = 42/85 (49.41%), Postives = 61/85 (71.76%), Query Frame = 1
Query: 10 GTKEPCNVLLVRVVNILYPVTLDALHQIFVRFGTVEKVVMFDKGSGFQALVQMHSTGQARAAFDAADSQEMYAGCNLLRVGYSSL 264
G ++ ++LLV V N++YPVT+D LHQ+F ++G + K+V+F K GFQAL+QM QA+AA A D Q +Y+GC LR+ YS+L
Sbjct: 200 GDEQSNHILLVTVTNLVYPVTIDILHQVFSKYGAIHKIVIFSK-KGFQALIQMGDKNQAQAAKQALDGQNIYSGCCTLRIQYSNL 283
BLAST of mRNA_P-wetherbeei_contig16687.1.1 vs. uniprot
Match: D7FN53_ECTSI (PTB (HnRNP) homolog family member (Ptb-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN53_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 1.440e-18 Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 1
Query: 1 LRPGTKEPCNVLLVRVVNILYPVTLDALHQIFVRFGTVEKVVMFDKGSGFQALVQMHSTGQARAAFDAADSQ 216
LRPG ++P NVLLVRV +I++PVT+ AL QIF RFG V+K+VMFDKGSG QALVQM + A +A +AAD Q
Sbjct: 78 LRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQ 149
BLAST of mRNA_P-wetherbeei_contig16687.1.1 vs. uniprot
Match: A0A0B7A9S1_9EUPU (RRM domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7A9S1_9EUPU) HSP 1 Score: 83.2 bits (204), Expect = 6.210e-18 Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 10 GTKEPCNVLLVRVVNILYPVTLDALHQIFVRFGTVEKVVMFDKGSGFQALVQMHSTGQARAAFDAADSQEMYAGCNLLRVGYSSL 264
G+ E +L + V N LYPV+LD LHQ+F++FG V K++ F K + FQAL+QM A AA + D Q +Y GCN L++ YS L
Sbjct: 30 GSDEQSTILRIIVDNALYPVSLDILHQLFIKFGKVLKIITFTKNNTFQALIQMSDAISAAAAKTSLDGQNIYNGCNTLKIDYSKL 114
BLAST of mRNA_P-wetherbeei_contig16687.1.1 vs. uniprot
Match: A0A0R3RNX6_9BILA (RRM domain-containing protein n=1 Tax=Elaeophora elaphi TaxID=1147741 RepID=A0A0R3RNX6_9BILA) HSP 1 Score: 82.0 bits (201), Expect = 8.370e-18 Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 1
Query: 16 KEPCNVLLVRVVNILYPVTLDALHQIFVRFGTVEKVVMFDKGSGFQALVQMHSTGQARAAFDAADSQEMYAGCNLLRVGYSSL 264
++P +VL V + N+LYPVTLD LHQIF R+G V +++ F+K + FQALVQ+ A+ A + D Q +Y GC LR+ YS L
Sbjct: 38 QQPNSVLRVIIENMLYPVTLDVLHQIFSRYGKVLRIITFNKNNTFQALVQLSEANSAQLARQSLDGQNVYNGCCCLRIDYSKL 120
BLAST of mRNA_P-wetherbeei_contig16687.1.1 vs. uniprot
Match: A0A0M3IVI3_ASCLU (RRM domain-containing protein n=1 Tax=Ascaris lumbricoides TaxID=6252 RepID=A0A0M3IVI3_ASCLU) HSP 1 Score: 81.3 bits (199), Expect = 2.410e-17 Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 1
Query: 16 KEPCNVLLVRVVNILYPVTLDALHQIFVRFGTVEKVVMFDKGSGFQALVQMHSTGQARAAFDAADSQEMYAGCNLLRVGYSSL 264
++P +VL V + N+LYPVTLD LHQIF R+G V +++ F+K + FQALVQ+ A+ A + D Q +Y GC LR+ YS L
Sbjct: 42 QQPNSVLRVIIENMLYPVTLDVLHQIFSRYGKVLRIITFNKNNTFQALVQLSEATSAQMARQSLDGQNVYNGCCCLRIDYSKL 124
BLAST of mRNA_P-wetherbeei_contig16687.1.1 vs. uniprot
Match: D3B4Z4_POLPP (RNA-binding region RNP-1 domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B4Z4_POLPP) HSP 1 Score: 83.6 bits (205), Expect = 7.320e-17 Identity = 38/85 (44.71%), Postives = 58/85 (68.24%), Query Frame = 1
Query: 10 GTKEPCNVLLVRVVNILYPVTLDALHQIFVRFGTVEKVVMFDKGSGFQALVQMHSTGQARAAFDAADSQEMYAGCNLLRVGYSSL 264
+ P N+LLV + NI+YPVT+D L+Q+F ++G+V K+++F K FQ+L+Q+H+T A A D Q +Y GC L++ YSSL
Sbjct: 131 SVETPNNILLVTISNIIYPVTIDVLYQLFSKYGSVLKILIFSKSGNFQSLIQLHTTDSAINAKRELDGQNIYNGCCTLKIQYSSL 215 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16687.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig16687.1.1 >prot_P-wetherbeei_contig16687.1.1 ID=prot_P-wetherbeei_contig16687.1.1|Name=mRNA_P-wetherbeei_contig16687.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=89bp LRPGTKEPCNVLLVRVVNILYPVTLDALHQIFVRFGTVEKVVMFDKGSGFback to top mRNA from alignment at P-wetherbeei_contig16687:443..1494+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig16687.1.1 ID=mRNA_P-wetherbeei_contig16687.1.1|Name=mRNA_P-wetherbeei_contig16687.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1052bp|location=Sequence derived from alignment at P-wetherbeei_contig16687:443..1494+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig16687:443..1494+ >mRNA_P-wetherbeei_contig16687.1.1 ID=mRNA_P-wetherbeei_contig16687.1.1|Name=mRNA_P-wetherbeei_contig16687.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig16687:443..1494+ (Phaeothamnion wetherbeei SAG_119_79)back to top |