mRNA_P-wetherbeei_contig16684.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16684.2.1
Unique NamemRNA_P-wetherbeei_contig16684.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16684.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16684contigP-wetherbeei_contig16684:1012..1423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size412
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186094.1920195-UTR-P-wetherbeei_contig16684:1011..10431683186094.1920195-UTR-P-wetherbeei_contig16684:1011..1043Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16684 1012..1043 -
1683186094.207941-UTR-P-wetherbeei_contig16684:1382..14231683186094.207941-UTR-P-wetherbeei_contig16684:1382..1423Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16684 1383..1423 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186094.200188-CDS-P-wetherbeei_contig16684:1043..13821683186094.200188-CDS-P-wetherbeei_contig16684:1043..1382Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16684 1044..1382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16684.2.1prot_P-wetherbeei_contig16684.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16684 1044..1382 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16684.2.1

>prot_P-wetherbeei_contig16684.2.1 ID=prot_P-wetherbeei_contig16684.2.1|Name=mRNA_P-wetherbeei_contig16684.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
MRCKTQQRRVWRLPEVAGWVLQLSRSRLGIGCPSRPLLVHTFVGRSLPPP
LRRLLPGLALDYALPWHFGGAARMMRELCSGTRRPLSLSMSTSFRFFNAT
AAGRRRHRFCVF*
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mRNA from alignment at P-wetherbeei_contig16684:1012..1423-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16684.2.1 ID=mRNA_P-wetherbeei_contig16684.2.1|Name=mRNA_P-wetherbeei_contig16684.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=412bp|location=Sequence derived from alignment at P-wetherbeei_contig16684:1012..1423- (Phaeothamnion wetherbeei SAG_119_79)
TTGCTTTCTTCCCTGTGTTTTCGTGGTTCTTGGACGAGCGAATGAGATGC
AAAACACAACAGCGGCGAGTCTGGAGGCTGCCTGAAGTGGCGGGGTGGGT
GTTACAGTTGTCACGGAGTCGGCTGGGTATTGGTTGCCCGTCGCGGCCGC
TGCTGGTGCATACATTTGTTGGACGCTCCTTGCCGCCGCCGCTGCGGCGA
CTGCTGCCGGGTTTAGCGCTCGATTACGCCCTTCCTTGGCATTTTGGCGG
CGCGGCTCGGATGATGCGTGAGTTGTGCAGCGGCACCCGTCGCCCTCTCT
CTCTTTCTATGTCAACCTCCTTCCGATTTTTCAACGCCACCGCCGCCGGC
CGGCGCCGCCACCGGTTCTGCGTCTTTTAACTCATTTATTGCTTCTGCCC
ATTGCCGCTCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16684:1012..1423-

>mRNA_P-wetherbeei_contig16684.2.1 ID=mRNA_P-wetherbeei_contig16684.2.1|Name=mRNA_P-wetherbeei_contig16684.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig16684:1012..1423- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGATGCAAAACACAACAGCGGCGAGTCTGGAGGCTGCCTGAAGTGGC
GGGGTGGGTGTTACAGTTGTCACGGAGTCGGCTGGGTATTGGTTGCCCGT
CGCGGCCGCTGCTGGTGCATACATTTGTTGGACGCTCCTTGCCGCCGCCG
CTGCGGCGACTGCTGCCGGGTTTAGCGCTCGATTACGCCCTTCCTTGGCA
TTTTGGCGGCGCGGCTCGGATGATGCGTGAGTTGTGCAGCGGCACCCGTC
GCCCTCTCTCTCTTTCTATGTCAACCTCCTTCCGATTTTTCAACGCCACC
GCCGCCGGCCGGCGCCGCCACCGGTTCTGCGTCTTTTAA
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