mRNA_P-wetherbeei_contig16678.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16678.1.1
Unique NamemRNA_P-wetherbeei_contig16678.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16678.1.1 vs. uniprot
Match: A0A3C0TX08_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TX08_9PROT)

HSP 1 Score: 324 bits (831), Expect = 3.090e-109
Identity = 162/219 (73.97%), Postives = 181/219 (82.65%), Query Frame = 3
Query:  219 MEPHVRSQLEDLVLDPQRPLIVTDADEVVAYFIAGLERFLHRNGHWLDLKSFAITGNIRRQGSNEASTQAQVKDLLAEFFNTDTELLDPVDGAAEALQALNARAQIIVLSNVPPSAHAARQRWLRRHGMDYPLVANAGSKGLPLRYLEEQINAPVFFLDDLPPHLDAVAEQARSVSLLHFIADKRLAALVGPAQNCHLHTSDWPDARAFIETKLDLLGF 875
            MEP V  QL  L LDP RPLIVTDADEV+ YFI+GLERFL RNG+WLDLK+FAITGNIR+QGSNE S++ QV+ LLA+FF TDTELLDPVDGAA+AL AL  RAQIIVLSNVP  A  ARQRWLR+HGMD+PLVANAGSKGLPLRYL +QI AP+FFLDDLPPH+DAVAE A  V  LHFIADKRLA+   PAQN H HTS WPDA+ FI  KL+  G+
Sbjct:    1 MEPFVHDQLRKLNLDPHRPLIVTDADEVLTYFISGLERFLSRNGYWLDLKNFAITGNIRKQGSNEVSSREQVQGLLADFFITDTELLDPVDGAADALNALARRAQIIVLSNVPLEAQDARQRWLRKHGMDFPLVANAGSKGLPLRYLSQQIVAPMFFLDDLPPHIDAVAEHASQVWRLHFIADKRLASFASPAQNSHFHTSHWPDAQNFIGGKLEESGY 219          
BLAST of mRNA_P-wetherbeei_contig16678.1.1 vs. uniprot
Match: A0A353LRG5_9PROT (Uncharacterized protein n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LRG5_9PROT)

HSP 1 Score: 272 bits (695), Expect = 1.650e-88
Identity = 134/215 (62.33%), Postives = 164/215 (76.28%), Query Frame = 3
Query:  231 VRSQLEDLVLDPQRPLIVTDADEVVAYFIAGLERFLHRNGHWLDLKSFAITGNIRRQGSNEASTQAQVKDLLAEFFNTDTELLDPVDGAAEALQALNARAQIIVLSNVPPSAHAARQRWLRRHGMDYPLVANAGSKGLPLRYLEEQINAPVFFLDDLPPHLDAVAEQARSVSLLHFIADKRLAALVGPAQNCHLHTSDWPDARAFIETKLDLLGF 875
            +++QL+ L L   +PLIVTDADEV+A FI GLE FL RNG WLDL+SFAI+GN++R   +    +A+V++LLA+FF  DTE L PV GAA+AL AL+ R QIIVLSNVP    AARQRWLR+HGMDYPLVAN+G KG  +R+L   I AP+FFLDDLPP+L +V+E    V LLHFIAD RLAAL+GPA +CHLHT+ W DA A+I   LDL GF
Sbjct:    6 IQAQLDALPLQSDQPLIVTDADEVIAQFIVGLEDFLTRNGFWLDLQSFAISGNVKRAEDHSVVERAEVQELLAQFFAADTESLLPVPGAADALSALSKRTQIIVLSNVPQPQRAARQRWLRQHGMDYPLVANSGPKGAAVRHLRSNIKAPIFFLDDLPPNLASVSELVEDVHLLHFIADSRLAALMGPAPDCHLHTTSWDDAHAYIAQALDLAGF 220          
BLAST of mRNA_P-wetherbeei_contig16678.1.1 vs. uniprot
Match: A0A2E9XYD2_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E9XYD2_9PROT)

HSP 1 Score: 227 bits (578), Expect = 8.640e-71
Identity = 116/224 (51.79%), Postives = 157/224 (70.09%), Query Frame = 3
Query:  204 LELSQMEPHVRSQLEDLVLDPQRPLIVTDADEVVAYFIAGLERFLHRNGHWLDLKSFAITGNIRRQGSNEASTQAQVKDLLAEFFNTDTELLDPVDGAAEALQALNARAQIIVLSNVPPSAHAARQRWLRRHGMDYPLVANAGSKGLPLRYLEEQINAPVFFLDDLPPHLDAVAEQARSVSLLHFIADKRLAALVGPAQNCHLHTSDWPDARAFIETKLDLLGF 875
            +E  ++   V SQLE L L P RPLIV+DADEV+  F+  LE FL  NGH++DL+SFA++GNIR   + +  +   VK L+ +FF+  TE ++PVDGAAEAL AL+ RAQI+VLSNVP     AR+R L ++GMDYPLVAN G KG  + YL E+  AP+FFLDD+P ++ +VA +A +V+ LHFIAD RL +L+G A++  +   DWP  R+FIE +L   GF
Sbjct:    1 MESDRLHDEVLSQLEALRLAPGRPLIVSDADEVIFAFVRSLEGFLLDNGHFMDLQSFALSGNIRDSATRQPVSAEMVKSLIGDFFSERTEQIEPVDGAAEALSALSERAQILVLSNVPLDQIPARRRALVKNGMDYPLVANIGRKGSAMAYLAERHEAPIFFLDDIPHNISSVARKAETVTRLHFIADHRLRSLLGQAEDADVRIDDWPSVRSFIEGRLSEQGF 224          
BLAST of mRNA_P-wetherbeei_contig16678.1.1 vs. uniprot
Match: A0A2D6T0S3_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D6T0S3_9PROT)

HSP 1 Score: 222 bits (565), Expect = 9.360e-69
Identity = 118/227 (51.98%), Postives = 148/227 (65.20%), Query Frame = 3
Query:  195 RAGLELSQMEPHVRSQLEDLVLDPQRPLIVTDADEVVAYFIAGLERFLHRNGHWLDLKSFAITGNIRRQGSNEASTQAQVKDLLAEFFNTDTELLDPVDGAAEALQALNARAQIIVLSNVPPSAHAARQRWLRRHGMDYPLVANAGSKGLPLRYLEEQINAPVFFLDDLPPHLDAVAEQARSVSLLHFIADKRLAALVGPAQNCHLHTSDWPDARAFIETKLDLLGF 875
            R G    Q  P V +QL  L LDP+RPLI++DADEV+  F+AG   F+  NG + D  SFA+TGN+R   S  A  Q +V +LL  FF+   + LDPV  AAEAL AL  RAQ+IVLSNVP  + AARQR LR + MDYPL+AN+G+KG  +R L EQ+ APV F+DD+P H  +VA     V  LHF+AD RLA L+ PA++ H     WP ARAFIE +L   GF
Sbjct:    3 REGSSKRQPPPEVATQLAALELDPKRPLIISDADEVLFEFMAGFVAFIEENGCYFDWASFALTGNVRECESERALDQDEVHELLQAFFDDRADRLDPVPDAAEALAALAKRAQVIVLSNVPKDSIAARQRSLRNNNMDYPLIANSGTKGPAVRVLAEQVQAPVLFIDDIPHHHTSVARAVERVIRLHFVADPRLARLLEPAEDSHHRADTWPAARAFIEERLTEAGF 229          
BLAST of mRNA_P-wetherbeei_contig16678.1.1 vs. uniprot
Match: A0A2E5BSK2_9HYPH (Uncharacterized protein n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2E5BSK2_9HYPH)

HSP 1 Score: 222 bits (565), Expect = 9.360e-69
Identity = 110/216 (50.93%), Postives = 152/216 (70.37%), Query Frame = 3
Query:  213 SQMEPHVRSQLEDLVLDPQRPLIVTDADEVVAYFIAGLERFLHRNGHWLDLKSFAITGNIRRQGSNEASTQAQVKDLLAEFFNTDTELLDPVDGAAEALQALNARAQIIVLSNVPPSAHAARQRWLRRHGMDYPLVANAGSKGLPLRYLEEQINAPVFFLDDLPPHLDAVAEQARSVSLLHFIADKRLAALVGPAQNCHLHTSDWPDARAFIETKL 860
            +Q+ P V   L  L LDP RPLI++DADEV+  F+AG ER+L   G W+DL+SFA++GNI+ + SN        KDLL++FF  +T  L+ V+ AA+AL++L+ARAQIIVL+NVP      R + L R GMDYP++AN G KG  ++YL +++ APVFFLDD+P +L +VAE       LHFIAD+RLA L+ P+++ H H+S WPDA+ FIE +L
Sbjct:    9 TQLHPEVEVALSQLDLDPSRPLIISDADEVLLQFMAGFERYLDGRGLWIDLQSFALSGNIKEKDSNTPFPVEDTKDLLSDFFIAETHKLEAVEHAADALKSLSARAQIIVLTNVPFEQRDTRAQSLARQGMDYPVIANTGLKGGAVKYLGDRVKAPVFFLDDIPHNLKSVAEAHEPSKRLHFIADRRLAKLLPPSKHSHFHSSHWPDAQQFIEQEL 224          
BLAST of mRNA_P-wetherbeei_contig16678.1.1 vs. uniprot
Match: A0A2A5ET65_9HYPH (Uncharacterized protein n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A5ET65_9HYPH)

HSP 1 Score: 221 bits (563), Expect = 2.070e-68
Identity = 110/224 (49.11%), Postives = 154/224 (68.75%), Query Frame = 3
Query:  204 LELSQMEPHVRSQLEDLVLDPQRPLIVTDADEVVAYFIAGLERFLHRNGHWLDLKSFAITGNIRRQGSNEASTQAQVKDLLAEFFNTDTELLDPVDGAAEALQALNARAQIIVLSNVPPSAHAARQRWLRRHGMDYPLVANAGSKGLPLRYLEEQINAPVFFLDDLPPHLDAVAEQARSVSLLHFIADKRLAALVGPAQNCHLHTSDWPDARAFIETKLDLLGF 875
            ++ S ++P V   L+ L LDP RPLI++DADEV+  F+AGLE +L R G WLDL+SFA++GNI+ + +N+     +  DLLA+FF ++   L+ V+ AA AL+ L+ RAQII+L+N+P +   AR   L R GMDYP++AN G KG  + YL +Q + P FFLDDLP ++ +VAE       LHFIADKRLA L+ P+++ H H+S WPDA+ FIE +L   GF
Sbjct:    9 MDRSALDPEVEKALKALDLDPARPLIISDADEVLLQFVAGLELYLDRQGLWLDLQSFALSGNIKEKVTNKPVPIERTPDLLADFFVSEAGKLEAVEHAASALKTLSGRAQIIILTNIPFAQRDARAESLARQGMDYPVIANKGLKGAAVHYLAKQTSGPTFFLDDLPHNIRSVAEAHEPSRRLHFIADKRLAKLLPPSEHSHFHSSHWPDAQTFIEEELSTSGF 232          
BLAST of mRNA_P-wetherbeei_contig16678.1.1 vs. uniprot
Match: A0A2D4VID3_9HYPH (Uncharacterized protein n=2 Tax=Parvibaculum TaxID=256616 RepID=A0A2D4VID3_9HYPH)

HSP 1 Score: 220 bits (561), Expect = 3.530e-68
Identity = 111/215 (51.63%), Postives = 150/215 (69.77%), Query Frame = 3
Query:  231 VRSQLEDLVLDPQRPLIVTDADEVVAYFIAGLERFLHRNGHWLDLKSFAITGNIRRQGSNEASTQAQVKDLLAEFFNTDTELLDPVDGAAEALQALNARAQIIVLSNVPPSAHAARQRWLRRHGMDYPLVANAGSKGLPLRYLEEQINAPVFFLDDLPPHLDAVAEQARSVSLLHFIADKRLAALVGPAQNCHLHTSDWPDARAFIETKLDLLGF 875
            V +QL +L L+  RPLIVTD DEV+  F+ GLER+L  N  W+DL+SFA++GNI+ + +NE     ++  LL  FF+T+T  LD V+GAA+AL  L+ RAQ++VLSN+P +    R   L   G+DYP++AN G KG P+R L E + APVFFLDDLPP++ +VAE       +HFIAD+RLA L+GPA++ H HT+DW  A+AFIE KL   GF
Sbjct:   13 VPAQLAELRLERGRPLIVTDCDEVLVEFLKGLERYLEANNLWIDLQSFALSGNIKHRDTNEPVPPKEMPALLERFFDTETHRLDAVEGAADALAELSKRAQVVVLSNLPLTQRRTRIDNLSAQGLDYPVIANQGLKGGPVRKLAELVEAPVFFLDDLPPNISSVAEAYEPSHRIHFIADERLAKLLGPAKDSHFHTTDWNAAKAFIEEKLAAEGF 227          
BLAST of mRNA_P-wetherbeei_contig16678.1.1 vs. uniprot
Match: A7HWY7_PARL1 (Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) TaxID=402881 RepID=A7HWY7_PARL1)

HSP 1 Score: 220 bits (560), Expect = 1.110e-67
Identity = 116/212 (54.72%), Postives = 144/212 (67.92%), Query Frame = 3
Query:  240 QLEDLVLDPQRPLIVTDADEVVAYFIAGLERFLHRNGHWLDLKSFAITGNIRRQGSNEASTQAQVKDLLAEFFNTDTELLDPVDGAAEALQALNARAQIIVLSNVPPSAHAARQRWLRRHGMDYPLVANAGSKGLPLRYLEEQINAPVFFLDDLPPHLDAVAEQARSVSLLHFIADKRLAALVGPAQNCHLHTSDWPDARAFIETKLDLLGF 875
            Q++ L L   RPLIV+DADEV+  F+ GLER+L     WLDLKSFA+TGNIR  G+NE    A +  LL  FF   T  LD V GAAEAL AL+ RAQI+VL+NVP  + AAR   L   G+DYP++AN G KG  +R + E++ APV FLDD+P +L +VA+      L+HFIAD RLA L+GPA++ H HT  WPDARAFIE KL   GF
Sbjct:   41 QIDALDLVRGRPLIVSDADEVLIQFVVGLERYLETQKLWLDLKSFALTGNIRHVGTNEPYDAAAMPALLEAFFEASTHALDIVPGAAEALAALSERAQIVVLTNVPLESRAARAASLAAQGIDYPVIANKGLKGGAVRRMAERVEAPVLFLDDIPHNLASVAKAHAPTHLIHFIADPRLAKLLGPAKDSHFHTGHWPDARAFIEQKLTEEGF 252          
BLAST of mRNA_P-wetherbeei_contig16678.1.1 vs. uniprot
Match: A0A2Z4UIT7_9HYPH (Uncharacterized protein n=2 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2Z4UIT7_9HYPH)

HSP 1 Score: 217 bits (553), Expect = 5.350e-67
Identity = 108/221 (48.87%), Postives = 152/221 (68.78%), Query Frame = 3
Query:  213 SQMEPHVRSQLEDLVLDPQRPLIVTDADEVVAYFIAGLERFLHRNGHWLDLKSFAITGNIRRQGSNEASTQAQVKDLLAEFFNTDTELLDPVDGAAEALQALNARAQIIVLSNVPPSAHAARQRWLRRHGMDYPLVANAGSKGLPLRYLEEQINAPVFFLDDLPPHLDAVAEQARSVSLLHFIADKRLAALVGPAQNCHLHTSDWPDARAFIETKLDLLGF 875
            ++++  VR  L  L LDP RPLI++DADEV+  F+AGLER+L   G WLDL++FA++GNI+R+ + +     +  DLL+ FF  +   L  VD AA+AL  L++RAQIIVL+NVP +   AR   L R GM+YP++AN G KG  + ++ +   APVFFLDD+P +L +VAE  +    LHFIADKRLA L+ P+++ H H+S WPDA+AF+E +L   GF
Sbjct:    5 AELDADVRDALNTLHLDPARPLIISDADEVLLQFVAGLERYLDGQGMWLDLQTFALSGNIKRKDTGDPVPVEETPDLLSGFFKAEAGNLTAVDHAADALSTLSSRAQIIVLTNVPTAQRDARAESLARQGMNYPVIANKGLKGPAVSHIADAFTAPVFFLDDIPHNLKSVAESHKESRRLHFIADKRLAKLLPPSEHSHFHSSHWPDAQAFMEAELAAHGF 225          
BLAST of mRNA_P-wetherbeei_contig16678.1.1 vs. uniprot
Match: A0A317E7I5_9PROT (Uncharacterized protein n=1 Tax=Zavarzinia aquatilis TaxID=2211142 RepID=A0A317E7I5_9PROT)

HSP 1 Score: 216 bits (549), Expect = 2.080e-66
Identity = 107/212 (50.47%), Postives = 144/212 (67.92%), Query Frame = 3
Query:  240 QLEDLVLDPQRPLIVTDADEVVAYFIAGLERFLHRNGHWLDLKSFAITGNIRRQGSNEASTQAQVKDLLAEFFNTDTELLDPVDGAAEALQALNARAQIIVLSNVPPSAHAARQRWLRRHGMDYPLVANAGSKGLPLRYLEEQINAPVFFLDDLPPHLDAVAEQARSVSLLHFIADKRLAALVGPAQNCHLHTSDWPDARAFIETKLDLLGF 875
            QLE LVL+  RPL++TDADEV+  F+ G E +L  NGH+LDL SFA+ GNI+   + E +     KDLL  FF   TE + PV GAA AL AL+ARAQ++VLSN+P S+  AR++ L   GM YP+VAN G KG  +R++ + + APVFFLDD+P +  +VA+ A  V  +HF+AD RLA L+GPA++CH    DW + R  IE +L  LG+
Sbjct:   13 QLEALVLEEGRPLVITDADEVLFLFLQGFEAYLEDNGHYLDLSSFALVGNIKNAATEEMAPVETAKDLLDGFFRERTETMTPVPGAAAALTALSARAQVVVLSNLPESSRGAREKALALAGMPYPIVANTGLKGPAVRHMADIVKAPVFFLDDIPHNHTSVAQAAPEVQRVHFVADPRLARLIGPAEHCHHRVDDWDEVRKLIEQELASLGW 224          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16678.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TX08_9PROT3.090e-10973.97Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A353LRG5_9PROT1.650e-8862.33Uncharacterized protein n=3 Tax=Alphaproteobacteri... [more]
A0A2E9XYD2_9PROT8.640e-7151.79Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A2D6T0S3_9PROT9.360e-6951.98Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A2E5BSK2_9HYPH9.360e-6950.93Uncharacterized protein n=1 Tax=Rhodobiaceae bacte... [more]
A0A2A5ET65_9HYPH2.070e-6849.11Uncharacterized protein n=1 Tax=Rhodobiaceae bacte... [more]
A0A2D4VID3_9HYPH3.530e-6851.63Uncharacterized protein n=2 Tax=Parvibaculum TaxID... [more]
A7HWY7_PARL11.110e-6754.72Uncharacterized protein n=1 Tax=Parvibaculum lavam... [more]
A0A2Z4UIT7_9HYPH5.350e-6748.87Uncharacterized protein n=2 Tax=Rhodobiaceae bacte... [more]
A0A317E7I5_9PROT2.080e-6650.47Uncharacterized protein n=1 Tax=Zavarzinia aquatil... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16678contigP-wetherbeei_contig16678:5..882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog402881.Plav_2812
Model size878
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.43e-69
EggNOG OGsCOG0647@1|root,COG0647@2|Bacteria,1N3II@1224|Proteobacteria,2UE72@28211|Alphaproteobacteria
DescriptionUMP catabolic process
Cds size660
COG categoryG
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186093.9319859-UTR-P-wetherbeei_contig16678:4..2221683186093.9319859-UTR-P-wetherbeei_contig16678:4..222Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16678 5..222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186093.9409666-CDS-P-wetherbeei_contig16678:222..8821683186093.9409666-CDS-P-wetherbeei_contig16678:222..882Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16678 223..882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16678.1.1prot_P-wetherbeei_contig16678.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16678 223..882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16678.1.1

>prot_P-wetherbeei_contig16678.1.1 ID=prot_P-wetherbeei_contig16678.1.1|Name=mRNA_P-wetherbeei_contig16678.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=220bp
MEPHVRSQLEDLVLDPQRPLIVTDADEVVAYFIAGLERFLHRNGHWLDLK
SFAITGNIRRQGSNEASTQAQVKDLLAEFFNTDTELLDPVDGAAEALQAL
NARAQIIVLSNVPPSAHAARQRWLRRHGMDYPLVANAGSKGLPLRYLEEQ
INAPVFFLDDLPPHLDAVAEQARSVSLLHFIADKRLAALVGPAQNCHLHT
SDWPDARAFIETKLDLLGF*
back to top

mRNA from alignment at P-wetherbeei_contig16678:5..882+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16678.1.1 ID=mRNA_P-wetherbeei_contig16678.1.1|Name=mRNA_P-wetherbeei_contig16678.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=878bp|location=Sequence derived from alignment at P-wetherbeei_contig16678:5..882+ (Phaeothamnion wetherbeei SAG_119_79)
CTTTGCGGGCGTTTTCTTGACTTGACCGGCATGGATCCTGCCGATGTGCG AGCCAGTGTCACGGATACCGCTTTTCTGGCCGCCGTCCTGGACTTTCTGC TTGGCCACGAGCCCAGCCTGCTGGAATTTTGTACTGCTGCTGATATTGAT CCGCAACACCCTGCCCGTGCGCGCGTCCTGCTTTTGGGCGATGCCGCGCC GGATTGGAGCTGAGCCAGATGGAACCACATGTCCGCAGCCAACTGGAAGA CCTGGTGCTGGACCCACAGCGCCCCCTGATCGTTACGGATGCAGATGAGG TGGTTGCCTATTTTATCGCAGGCTTAGAACGGTTCCTGCATCGAAACGGC CATTGGCTCGATCTGAAAAGTTTTGCAATCACAGGCAATATTCGCAGGCA GGGCAGTAACGAGGCCAGCACACAGGCACAGGTAAAAGATCTGTTGGCCG AGTTTTTTAACACGGACACGGAACTGCTTGATCCCGTAGATGGTGCGGCC GAGGCGTTGCAGGCGCTGAATGCGCGTGCACAAATCATTGTTCTCAGTAA TGTGCCGCCGTCCGCACATGCCGCCCGCCAGCGCTGGCTGCGCAGGCACG GGATGGATTATCCGCTGGTCGCCAATGCCGGTTCAAAAGGTCTTCCGCTG CGTTATCTTGAGGAACAGATAAACGCGCCGGTATTTTTTCTGGATGATTT ACCCCCGCATCTGGATGCAGTGGCCGAACAGGCCCGCAGCGTATCTCTGC TGCATTTTATCGCGGACAAACGCCTGGCCGCACTGGTTGGGCCTGCCCAG AACTGTCATCTGCACACCAGCGACTGGCCTGACGCGCGCGCTTTCATCGA GACGAAACTGGACCTGCTCGGATTTTAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig16678:5..882+

>mRNA_P-wetherbeei_contig16678.1.1 ID=mRNA_P-wetherbeei_contig16678.1.1|Name=mRNA_P-wetherbeei_contig16678.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=660bp|location=Sequence derived from alignment at P-wetherbeei_contig16678:5..882+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAACCACATGTCCGCAGCCAACTGGAAGACCTGGTGCTGGACCCACA
GCGCCCCCTGATCGTTACGGATGCAGATGAGGTGGTTGCCTATTTTATCG
CAGGCTTAGAACGGTTCCTGCATCGAAACGGCCATTGGCTCGATCTGAAA
AGTTTTGCAATCACAGGCAATATTCGCAGGCAGGGCAGTAACGAGGCCAG
CACACAGGCACAGGTAAAAGATCTGTTGGCCGAGTTTTTTAACACGGACA
CGGAACTGCTTGATCCCGTAGATGGTGCGGCCGAGGCGTTGCAGGCGCTG
AATGCGCGTGCACAAATCATTGTTCTCAGTAATGTGCCGCCGTCCGCACA
TGCCGCCCGCCAGCGCTGGCTGCGCAGGCACGGGATGGATTATCCGCTGG
TCGCCAATGCCGGTTCAAAAGGTCTTCCGCTGCGTTATCTTGAGGAACAG
ATAAACGCGCCGGTATTTTTTCTGGATGATTTACCCCCGCATCTGGATGC
AGTGGCCGAACAGGCCCGCAGCGTATCTCTGCTGCATTTTATCGCGGACA
AACGCCTGGCCGCACTGGTTGGGCCTGCCCAGAACTGTCATCTGCACACC
AGCGACTGGCCTGACGCGCGCGCTTTCATCGAGACGAAACTGGACCTGCT
CGGATTTTAA
back to top