mRNA_P-wetherbeei_contig16660.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig16660.1.1 vs. uniprot
Match: A0A4D9D7G3_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7G3_9STRA) HSP 1 Score: 106 bits (265), Expect = 7.030e-22 Identity = 76/194 (39.18%), Postives = 101/194 (52.06%), Query Frame = 1
Query: 421 DLPRRCICALGPLFGHLRRFRLARVF-QRPTLTPFASAA-YVALDAVTLRDLEV------LACQADG-------REAGSLLWLLNRTATPGGYRTLREWVTRPLLQRDAILARQEAVTALAFDPPRALEP---LLATLKRGGCG------GGGAVGGGNLDASIASLHHRNIHPRRLHTLLTVAAALAAALPPP 930
P C+ LGPL HL+ + ++R+ RP+ PF A ++ LD VTLRDLE+ L+ Q G +E GSL W LN+T+T G R LREWV +PL++++ I R +AV LAF P LE L+A R G GG G +L + +L + I PRRL LL L ALPPP
Sbjct: 202 SFPAPCLAVLGPLLLHLQEYGMSRLLLSRPSFQPFLRPALHMTLDGVTLRDLEIFSTPRGLSGQGGGEGGREGEQEEGSLFWFLNQTSTSYGSRLLREWVRKPLMRKEDIEGRLDAVEELAFALPPCLEEDGGLVAGFFRAKGGRRARGRAGGRKGFADLGTLVTALRYHKIVPRRLFLLLQTLECLLLALPPP 395
BLAST of mRNA_P-wetherbeei_contig16660.1.1 vs. uniprot
Match: D7FYL3_ECTSI (MutS protein homolog 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL3_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 3.150e-19 Identity = 100/320 (31.25%), Postives = 129/320 (40.31%), Query Frame = 1
Query: 46 LSRASERLLERYRETAVDASGRPRVVRTDRVPTEAFDFDEAYAELAEYCAG-------DANGGXXXXXXXGGGSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSGAMVN--------TLGPVAATTVLDLPRR--------CICALGPLFGHLRRFRLARVFQRPTLTPFASAAYVALDAVTLRDLEVLACQADGREAGSLLWLLNRTATPGGYRTLREWVTRPLLQRDAILARQEAVTALAFDPPRALEPLLATLKRGGCGGGGAVGGGNLDASIASLHHRNIHPRRLHTLLTVAAALAAALPPPDA 936
LS+ +E + RY E+AVDA G RVVRT+R+P E F F+ A A L++Y DA+ G X GG S + TL + +T + LPR+ C L + V S A + + VL CQADGREAGSL +L+RT T G R L WV +PLL + I ARQ+AV L DPP +E L TL+ +LD +IASLHHR I P RL +LL + PP A
Sbjct: 660 LSKETEATVARYCESAVDARGDRRVVRTERLPPEDFCFEAAQASLSKYYGKGRGSSKPDASEGEKDGNGXXGGDGCAPVLTRVLDLPRPAICALGPLMTHLERFGLDRSLASPDLSSFSKSQYMTLDAVTLRDLEVSTTVVLPRKDAIVFVAACCLVLSGVTSFSSLVPPGEVGGAEQKIGSWSTDSRAPEVIP----SVLQCQADGREAGSLFSILDRTQTAFGRRVLAGWVRQPLLSPEDITARQDAVEELVTDPPSVMERLRPTLRDLK----------DLDPAIASLHHRRIQPNRLLSLLGTMRKVFGVFHPPTA 965
BLAST of mRNA_P-wetherbeei_contig16660.1.1 vs. uniprot
Match: A0A7S4PJ16_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PJ16_GUITH) HSP 1 Score: 95.5 bits (236), Expect = 4.300e-18 Identity = 63/168 (37.50%), Postives = 91/168 (54.17%), Query Frame = 1
Query: 391 LGPVAATTVLDLPRRCICALGPLFGHLRRFRLARVFQRPT-LTPFASAAYVALDAVTLRDLEVLACQADGREAGSLLWLLNRTATPGGYRTLREWVTRPLLQRDAILARQEAVTALAFDPPRALEPLLATLKRGGCGGGGAVGGGNLDASIASLHHRNIHPRRLHTLL 891
+G +V+ LP I LG L +L+ F+L V Q T F+S +++ L + L +LE+L+ Q +G E GSLLWLL +T T G R LR+W+T PLL ++ I+AR EAV L DP L+ L L+ G +L+ ++A LH+ P L LL
Sbjct: 349 IGGAGLKSVMQLPAAVISCLGGLLHYLKEFKLESVLQLTTNFWKFSSPSHMQLSSSVLSNLELLSTQ-EGSEHGSLLWLLKQTRTAFGARLLRQWITHPLLDKERIVARHEAVEELMLDPAP-LDELQQQLR----------GLPDLERALARLHYHKSAPNELLLLL 504
BLAST of mRNA_P-wetherbeei_contig16660.1.1 vs. uniprot
Match: A0A3B3SYK6_9TELE (DNA mismatch repair protein n=3 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3SYK6_9TELE) HSP 1 Score: 90.5 bits (223), Expect = 2.130e-16 Identity = 60/171 (35.09%), Postives = 87/171 (50.88%), Query Frame = 1
Query: 409 TTVLDLPRRCICALGPLFGHLRRFRLARVFQRPTLTPFASAA--YVALDAVTLRDLEVLACQADGREAGSLLWLLNRTATPGGYRTLREWVTRPLLQRDAILARQEAVTALAFDPPRALEPLLATLKRGGCGGGGAVGGGNLDASIASLHHRNIHPRRLHTLLTVAAALAA 915
++V+ + IC LGP+ +L F L RV + S A + L A T+R+LEVL Q DGR GSLLW+L+ T TP G R L++WVT+PL I RQEAV + L + A LKR +L+ I S++H+ + + + + + LAA
Sbjct: 457 SSVISMETPVICCLGPVIQYLTEFNLERVLLSASSFRRLSCADDCMMLSATTMRNLEVLCNQTDGRIRGSLLWVLDHTQTPFGKRLLKKWVTQPLKSAAEIRERQEAVAEILSSDSSVLLNVQALLKRLP----------DLERGICSIYHKKCSTQEFYLITSTLSRLAA 617
BLAST of mRNA_P-wetherbeei_contig16660.1.1 vs. uniprot
Match: Q4RUX4_TETNG ((spotted green pufferfish) hypothetical protein (Fragment) n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4RUX4_TETNG) HSP 1 Score: 90.1 bits (222), Expect = 2.340e-16 Identity = 59/173 (34.10%), Postives = 90/173 (52.02%), Query Frame = 1
Query: 409 TTVLDLPRRCICALGPLFGHLRRFRLARVFQRPTLTPFASAAY--VALDAVTLRDLEVLACQADGREAGSLLWLLNRTATPGGYRTLREWVTRPLLQRDAILARQEAVTALA---FDPPRALEPLLATLKRGGCGGGGAVGGGNLDASIASLHHRNIHPRRLHTLLTVAAALA 912
++V L IC LGPL +LR F L RV + + S+A + L+A TLR+LE+L Q DGR GSLLW+L+ T T G R LR+WV++PL +++L R +AV + P ++ LL+ L +LD I ++HR + + + + A L+
Sbjct: 20 SSVASLESPVICCLGPLIQYLREFNLERVLRSESSFQHLSSASGGMTLNAATLRNLEILNNQTDGRVKGSLLWVLDHTRTRFGRRMLRKWVSQPLTDTESVLRRLDAVQEILESNCSPLNSVRSLLSHLP-------------DLDRGICGIYHRKSSTQEFYIICSSLARLS 179
BLAST of mRNA_P-wetherbeei_contig16660.1.1 vs. uniprot
Match: A0A8C6M718_NOTFU (MutS homolog 3 (E. coli) n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6M718_NOTFU) HSP 1 Score: 90.1 bits (222), Expect = 2.600e-16 Identity = 57/137 (41.61%), Postives = 76/137 (55.47%), Query Frame = 1
Query: 409 TTVLDLPRRCICALGPLFGHLRRFRLARVFQRPTLTPFASAAY--VALDAVTLRDLEVLACQADGREAGSLLWLLNRTATPGGYRTLREWVTRPLLQRDAILARQEAVT------ALAFDPPRALEPLLATLKRGGC 795
++V L +C LGPL +L+ F L RV + + S V L+A TLR+LE+L Q DGR GSLLW+L+ T T G R +R+WV+RPL +I RQEAV +L + RAL L L+RG C
Sbjct: 348 SSVASLESPVVCCLGPLIQYLQEFNLERVLRNESSFQRLSCESEGVTLNATTLRNLEILTNQTDGRVKGSLLWVLDHTRTAFGRRLMRKWVSRPLTDLHSISQRQEAVQEIMESDSLTLNSVRALLSHLPDLERGIC 484
BLAST of mRNA_P-wetherbeei_contig16660.1.1 vs. uniprot
Match: H3DD48_TETNG (MutS homolog 3 (E. coli) n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3DD48_TETNG) HSP 1 Score: 90.1 bits (222), Expect = 2.700e-16 Identity = 59/173 (34.10%), Postives = 90/173 (52.02%), Query Frame = 1
Query: 409 TTVLDLPRRCICALGPLFGHLRRFRLARVFQRPTLTPFASAAY--VALDAVTLRDLEVLACQADGREAGSLLWLLNRTATPGGYRTLREWVTRPLLQRDAILARQEAVTALA---FDPPRALEPLLATLKRGGCGGGGAVGGGNLDASIASLHHRNIHPRRLHTLLTVAAALA 912
++V L IC LGPL +LR F L RV + + S+A + L+A TLR+LE+L Q DGR GSLLW+L+ T T G R LR+WV++PL +++L R +AV + P ++ LL+ L +LD I ++HR + + + + A L+
Sbjct: 266 SSVASLESPVICCLGPLIQYLREFNLERVLRSESSFQHLSSASGGMTLNAATLRNLEILNNQTDGRVKGSLLWVLDHTRTRFGRRMLRKWVSQPLTDTESVLRRLDAVQEILESNCSPLNSVRSLLSHLP-------------DLDRGICGIYHRKSSTQEFYIICSSLARLS 425
BLAST of mRNA_P-wetherbeei_contig16660.1.1 vs. uniprot
Match: A0A1A8DFW2_9TELE (MutS homolog 3 (Fragment) n=1 Tax=Nothobranchius kadleci TaxID=1051664 RepID=A0A1A8DFW2_9TELE) HSP 1 Score: 89.4 bits (220), Expect = 4.790e-16 Identity = 56/137 (40.88%), Postives = 76/137 (55.47%), Query Frame = 1
Query: 409 TTVLDLPRRCICALGPLFGHLRRFRLARVFQRPTLTPFASAAY--VALDAVTLRDLEVLACQADGREAGSLLWLLNRTATPGGYRTLREWVTRPLLQRDAILARQEAVT------ALAFDPPRALEPLLATLKRGGC 795
++V + +C LGPL +L+ F L RV + + S V L+A TLR+LE+L Q DGR GSLLW+L+ T T G R +R+WV+RPL +I RQEAV +L + RAL L L+RG C
Sbjct: 190 SSVASMESPVVCCLGPLIQYLQEFNLERVLRNESSFQRLSCESEGVTLNATTLRNLEILTNQTDGRVKGSLLWVLDHTRTAFGRRLMRKWVSRPLTDLHSISQRQEAVQEIMESDSLTLNSVRALLSHLPDLERGIC 326
BLAST of mRNA_P-wetherbeei_contig16660.1.1 vs. uniprot
Match: A0A1A8CZT0_9TELE (DNA mismatch repair protein n=18 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8CZT0_9TELE) HSP 1 Score: 89.4 bits (220), Expect = 5.220e-16 Identity = 56/137 (40.88%), Postives = 76/137 (55.47%), Query Frame = 1
Query: 409 TTVLDLPRRCICALGPLFGHLRRFRLARVFQRPTLTPFASAAY--VALDAVTLRDLEVLACQADGREAGSLLWLLNRTATPGGYRTLREWVTRPLLQRDAILARQEAVT------ALAFDPPRALEPLLATLKRGGC 795
++V + +C LGPL +L+ F L RV + + S V L+A TLR+LE+L Q DGR GSLLW+L+ T T G R +R+WV+RPL +I RQEAV +L + RAL L L+RG C
Sbjct: 459 SSVASMESPVVCCLGPLIQYLQEFNLERVLRNESSFQRLSCESEGVTLNATTLRNLEILTNQTDGRVKGSLLWVLDHTRTAFGRRLMRKWVSRPLTDLHSISQRQEAVQEIMESDSLTLNSVRALLSHLPDLERGIC 595
BLAST of mRNA_P-wetherbeei_contig16660.1.1 vs. uniprot
Match: A0A6H5K2F4_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2F4_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 8.770e-16 Identity = 54/109 (49.54%), Postives = 63/109 (57.80%), Query Frame = 1
Query: 574 VLACQADGREAGSLLWLLNRTATPGGYRTLREWVTRPLLQRDAILARQEAVTALAFDPPRALE---PLLATLKRGGCGGGGAVGGGNLDASIASLHHRNIHPRRLHTLL 891
VL CQADGREAGSL +L+RT T G R L WV +PLL + I ARQ+AV L DPP +E P L LK +LD + ASLHHR I P RL +LL
Sbjct: 2 VLQCQADGREAGSLFSILDRTQTAFGRRVLAGWVRQPLLSPEDITARQDAVEELVADPPSVMERLRPALRDLK-------------DLDPATASLHHRRIQPSRLLSLL 97 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16660.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig16660.1.1 >prot_P-wetherbeei_contig16660.1.1 ID=prot_P-wetherbeei_contig16660.1.1|Name=mRNA_P-wetherbeei_contig16660.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=313bp LPLPAAAAAAAGGGGLSRASERLLERYRETAVDASGRPRVVRTDRVPTEAback to top mRNA from alignment at P-wetherbeei_contig16660:2..1113+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig16660.1.1 ID=mRNA_P-wetherbeei_contig16660.1.1|Name=mRNA_P-wetherbeei_contig16660.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1112bp|location=Sequence derived from alignment at P-wetherbeei_contig16660:2..1113+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig16660:2..1113+ >mRNA_P-wetherbeei_contig16660.1.1 ID=mRNA_P-wetherbeei_contig16660.1.1|Name=mRNA_P-wetherbeei_contig16660.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=939bp|location=Sequence derived from alignment at P-wetherbeei_contig16660:2..1113+ (Phaeothamnion wetherbeei SAG_119_79)back to top |