mRNA_P-wetherbeei_contig16656.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16656.1.1
Unique NamemRNA_P-wetherbeei_contig16656.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16656.1.1 vs. uniprot
Match: A0A836SB17_9GAMM (Uncharacterized protein n=1 Tax=Thiotrichaceae bacterium TaxID=2030882 RepID=A0A836SB17_9GAMM)

HSP 1 Score: 57.8 bits (138), Expect = 7.880e-6
Identity = 43/149 (28.86%), Postives = 71/149 (47.65%), Query Frame = 1 
Query:  379 PSVFAMRFFPPLLLIYTLSLLPVGRIFSTWTLSALVLCSLWALESLAFGLLAYSAFVLLHCIG-NRILIAHCLRSLTVLFACVGLTHACVWAGYMLA-YGLPPDYVTYLQLVLFHL---------EGGAYWNLPIEPGIMVWALFGFTY 792
            PS +  RF  PLLLI  +  LP  ++FS WT+ A++LCS ++ E   +G+  Y  + ++ C+  N+    + L     L     L+   +++  +L  YG  P Y  YL+L++ H+              WN  I P  ++W  F   Y
Sbjct:    7 PSTYGARFLWPLLLILAILYLPRNKLFSLWTILAVLLCSFFSAELFVWGIATYLTYTVIFCLTHNKHQKFYDLPKNIFLVLMTFLSSHIIYSLIILGVYGSLPRYDIYLELIISHIFNQDLPHFNNSIVNWNETIRPHFILWGGFAAVY 155
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16656.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836SB17_9GAMM7.880e-628.86Uncharacterized protein n=1 Tax=Thiotrichaceae bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16656contigP-wetherbeei_contig16656:582..1394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1037409.BJ6T_37260
Preferred namecopG
PFAMsDUF411
Model size813
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.3e-08
EggNOG OGsCOG3019@1|root,COG3019@2|Bacteria
Descriptionmetal-binding protein
Cds size813
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186093.3074582-CDS-P-wetherbeei_contig16656:581..13941683186093.3074582-CDS-P-wetherbeei_contig16656:581..1394Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16656 582..1394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16656.1.1prot_P-wetherbeei_contig16656.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16656 582..1394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16656.1.1

>prot_P-wetherbeei_contig16656.1.1 ID=prot_P-wetherbeei_contig16656.1.1|Name=mRNA_P-wetherbeei_contig16656.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=271bp
GPIPDATRFIGIALVISLVDVYMMMDSASFAPYIAPAFLVAEGQRPMIDT
FSQYGPNFLIFALAFKVLPLSFFTMSAIVAVLNVLMYLTFLGIAVNISRN
KTFAFVIAICTILFIHSAHLYNINYTPSVFAMRFFPPLLLIYTLSLLPVG
RIFSTWTLSALVLCSLWALESLAFGLLAYSAFVLLHCIGNRILIAHCLRS
LTVLFACVGLTHACVWAGYMLAYGLPPDYVTYLQLVLFHLEGGAYWNLPI
EPGIMVWALFGFTYATMLALA
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mRNA from alignment at P-wetherbeei_contig16656:582..1394+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16656.1.1 ID=mRNA_P-wetherbeei_contig16656.1.1|Name=mRNA_P-wetherbeei_contig16656.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=813bp|location=Sequence derived from alignment at P-wetherbeei_contig16656:582..1394+ (Phaeothamnion wetherbeei SAG_119_79)
GGACCGATCCCGGATGCGACTAGATTCATCGGCATAGCGCTGGTGATTTC
CCTTGTTGACGTTTATATGATGATGGATTCGGCATCGTTCGCACCGTACA
TTGCTCCGGCCTTTCTTGTCGCCGAGGGCCAAAGGCCGATGATCGATACC
TTTTCGCAGTACGGCCCCAACTTCCTGATATTCGCCCTAGCCTTCAAGGT
CCTGCCGCTGTCGTTCTTCACGATGAGCGCAATCGTCGCGGTACTAAACG
TACTGATGTACCTGACCTTCCTGGGTATCGCTGTGAATATCTCCAGGAAC
AAGACCTTCGCTTTCGTCATCGCGATCTGCACCATACTTTTTATACACAG
CGCCCACCTCTACAACATCAACTACACACCGTCCGTATTCGCGATGCGGT
TCTTCCCGCCGCTCTTGCTGATCTACACACTCAGCCTCTTGCCAGTCGGT
CGGATATTCAGTACGTGGACGTTATCGGCTCTCGTACTTTGTTCGCTCTG
GGCGCTTGAGAGCCTTGCGTTCGGGCTGCTCGCGTATTCCGCATTCGTGC
TGCTTCACTGCATCGGCAACCGCATACTGATCGCGCATTGCTTGCGCTCA
CTGACGGTGTTGTTCGCTTGCGTCGGTCTCACGCACGCCTGCGTTTGGGC
CGGCTACATGCTGGCCTACGGTCTCCCTCCGGATTACGTCACGTATCTCC
AACTGGTGCTTTTTCACCTCGAGGGCGGCGCCTACTGGAATCTGCCGATC
GAGCCGGGGATCATGGTATGGGCCCTCTTCGGGTTCACTTACGCGACTAT
GCTGGCGCTGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16656:582..1394+

>mRNA_P-wetherbeei_contig16656.1.1 ID=mRNA_P-wetherbeei_contig16656.1.1|Name=mRNA_P-wetherbeei_contig16656.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=813bp|location=Sequence derived from alignment at P-wetherbeei_contig16656:582..1394+ (Phaeothamnion wetherbeei SAG_119_79)
GGACCGATCCCGGATGCGACTAGATTCATCGGCATAGCGCTGGTGATTTC
CCTTGTTGACGTTTATATGATGATGGATTCGGCATCGTTCGCACCGTACA
TTGCTCCGGCCTTTCTTGTCGCCGAGGGCCAAAGGCCGATGATCGATACC
TTTTCGCAGTACGGCCCCAACTTCCTGATATTCGCCCTAGCCTTCAAGGT
CCTGCCGCTGTCGTTCTTCACGATGAGCGCAATCGTCGCGGTACTAAACG
TACTGATGTACCTGACCTTCCTGGGTATCGCTGTGAATATCTCCAGGAAC
AAGACCTTCGCTTTCGTCATCGCGATCTGCACCATACTTTTTATACACAG
CGCCCACCTCTACAACATCAACTACACACCGTCCGTATTCGCGATGCGGT
TCTTCCCGCCGCTCTTGCTGATCTACACACTCAGCCTCTTGCCAGTCGGT
CGGATATTCAGTACGTGGACGTTATCGGCTCTCGTACTTTGTTCGCTCTG
GGCGCTTGAGAGCCTTGCGTTCGGGCTGCTCGCGTATTCCGCATTCGTGC
TGCTTCACTGCATCGGCAACCGCATACTGATCGCGCATTGCTTGCGCTCA
CTGACGGTGTTGTTCGCTTGCGTCGGTCTCACGCACGCCTGCGTTTGGGC
CGGCTACATGCTGGCCTACGGTCTCCCTCCGGATTACGTCACGTATCTCC
AACTGGTGCTTTTTCACCTCGAGGGCGGCGCCTACTGGAATCTGCCGATC
GAGCCGGGGATCATGGTATGGGCCCTCTTCGGGTTCACTTACGCGACTAT
GCTGGCGCTGGCC
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