mRNA_P-wetherbeei_contig1664.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: A0A835ZDP1_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDP1_9STRA) HSP 1 Score: 167 bits (423), Expect = 7.240e-47 Identity = 97/197 (49.24%), Postives = 128/197 (64.97%), Query Frame = 3
Query: 210 LALLAGSASAFIAP---ALPTRAVTSRASTAVRMSLLDGVFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAMLAVLGVIVQYFVQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIWEDSESSEPGNYGFGIFPASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGKGPIENIL 791
LA +AG ASAF+AP A V S +ST+++MS+ D + G ET G WDP G A + L KY+ ELK+GRVAMLA LGV+VQ FV LPDPVF+ GAKP A +++ RP AL QIFL G ++ L+ + G+ GFG +P ++EEF L++KE+KN RLAM+A +GM QE + G+GPIE IL
Sbjct: 9 LACVAG-ASAFVAPSSFAGSALKVASTSSTSLKMSV-DELIGADTETSGV----WDPAGFAKDDAALYKYREVELKHGRVAMLATLGVLVQSFVTLPDPVFANGAKPQTAAWELVTSRPEALAQIFLACGAIELLVLKQDPEKPAGDLGFGAYPDTEEEFETLQLKELKNGRLAMMAIVGMFVQEKLTGQGPIEQIL 199
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: A0A835ZHX7_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHX7_9STRA) HSP 1 Score: 167 bits (423), Expect = 7.460e-47 Identity = 89/192 (46.35%), Postives = 123/192 (64.06%), Query Frame = 3
Query: 225 GSASAFIAPALPTRAVTSRASTA---VRMSLLDGVFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAMLAVLGVIVQYFVQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIWEDSESSEPGNYGFGIFPASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGKGPIENIL 791
GSA+AF+AP+ A A +RM++ D + G ETGG WDPLG A EK L KY+ ELK+GRVA LA+LGV+ Q F LPDPVF+ GA+P A + ++ ERP A+ QIFL VG+++ + + PG+ GFGI+P + EE +L++KE+KN RLA +A +G QE + G+GPIE +L
Sbjct: 14 GSAAAFVAPSSFAGTALKAAPVATGPLRMAVED-LIGADTETGGI----WDPLGFAKDEKSLYKYREAELKHGRVAQLAILGVLAQTFFHLPDPVFAGGARPQEALASLIKERPEAIAQIFLAVGVVELFLLKQDPEKAPGDLGFGIYPDTQEELEELQLKELKNGRLAQVAIVGAFVQEKLTGQGPIEQLL 200
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: A0A835Z571_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z571_9STRA) HSP 1 Score: 163 bits (412), Expect = 3.050e-45 Identity = 91/190 (47.89%), Postives = 122/190 (64.21%), Query Frame = 3
Query: 231 ASAFIAP---ALPTRAVTSRASTAVRMSLLDGVFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAMLAVLGVIVQYFVQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIWEDSESSEPGNYGFGIFPASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGKGPIENIL 791
A AF+AP A V + ST++RMS+ + + G ETGG WDP G A + L KY+ ELK+GRVAMLA LGV+VQ FV LPDPVF+ GA+P A ++ + RP AL QIFL G ++ L+ + PG+ GFG +P ++EE L++KE+KN RLAM+A +GM QE + G+GPIE IL
Sbjct: 14 ACAFVAPSSFAGSALKVATPTSTSLRMSVEE-LIGADTETGGV----WDPAGFAKDDAALYKYREVELKHGRVAMLATLGVLVQSFVTLPDPVFADGARPQTAAFELASSRPEALAQIFLACGAVELLVLKQDPEKAPGDLGFGAYPDTEEELEVLQLKELKNGRLAMMAIVGMFVQEKLTGQGPIEQIL 198
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: A0A0G4FFG9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FFG9_VITBC) HSP 1 Score: 150 bits (379), Expect = 2.640e-40 Identity = 89/201 (44.28%), Postives = 118/201 (58.71%), Query Frame = 3
Query: 201 VAALALLAGSASAFIAPALPTRAVTSR--ASTAVRMSLLDGVFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAMLAVLGVIVQYFVQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIWEDSESSEPG---NYGFGIFPASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGKGPIENI 788
+ A+ALL A AF+ P A+ SR A A M +D + G ETGG WDPLGL+ +E L Y+ ELK+GRV M+AVLGVIVQ + QLPDPVF+ +PL A QV +RP A++QI L +G + S PG N+G P + +F +L+ KE+KN RLAMI GM+ QE + G+GP+E I
Sbjct: 5 ICAIALLVVGAHAFVPPTGFQGALRSRGAARPATTMGAVDQLAGADVETGGV----WDPLGLSQNEDALSLYRAAELKHGRVCMMAVLGVIVQTYFQLPDPVFNN-PRPLEAIVQVWQQRPEAIIQILLAIGATELYFLRQSPEDPPGSLQNFGAAFRPRDEAKFEELQRKELKNGRLAMIGISGMLVQEALTGQGPLEQI 200
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: W7TXE6_9STRA (Light harvesting complex protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXE6_9STRA) HSP 1 Score: 150 bits (378), Expect = 3.220e-40 Identity = 86/193 (44.56%), Postives = 121/193 (62.69%), Query Frame = 3
Query: 219 LAGSASAFIAPALPTRAVTSRASTAVRMSLLDGVFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAMLAVLGVIVQYFVQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIWEDSESSEPG--NYGFGIFPASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGKGPIENIL 791
L SA+AFI PA +S A + ++ + + G ETGG WDPLGL+ +E L+KY+ ELK+GRVAM A+LG+ VQ LPDPVFS +PLAA QV +RP A+ QI +G+G+++ E PG N+G P S++EF +L++KE+KN RLAM+A MG + QE + G+GP+E +L
Sbjct: 10 LLSSAAAFI-PATFNTGKSSYARKNLVVASVSDLIGADTETGGI----WDPLGLSQNEGSLRKYRECELKHGRVAMAAMLGIFVQGLYHLPDPVFSN-PRPLAALQQVYEQRPEAIWQIIVGLGVIEFTGGRQKEDRAPGDLNFGSSFIPKSEKEFEELQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVL 196
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: A0A835ZIK7_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK7_9STRA) HSP 1 Score: 143 bits (361), Expect = 5.570e-38 Identity = 85/175 (48.57%), Postives = 114/175 (65.14%), Query Frame = 3
Query: 276 SRASTAVRMSLLDGVFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAMLAVLGVIVQYFVQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIW-EDSESSEPGNYG-FGIF--PASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGKGPIENI 788
S A+ RM++ D + G ET G WDPL L+ + L KY+ ELK+GRVAMLA LGV+VQ F LPDPVFS +PLAA SQ+LAERP A QIFL VG + I +D E+ PG+ FG F P+ ++E+ ++++E+KN RLAM+A +GM QE + G+GPIE +
Sbjct: 5 SAAAAVTRMAVQD-MLGADIETSGV----WDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPDPVFSN-PRPLAALSQILAERPVAFWQIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDEWEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQL 173
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: A0A835YR33_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR33_9STRA) HSP 1 Score: 136 bits (342), Expect = 7.410e-35 Identity = 81/195 (41.54%), Postives = 121/195 (62.05%), Query Frame = 3
Query: 201 VAALALLAGSASAFIAPALPTRAVTSRASTAVRMSL-LDGVFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAMLAVLGVIVQYF-VQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIWEDSESSEPG---NYGFGIFPASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGK 770
V A+ALLAGSA AF+ + A+ + + MS+ +D + G E GG +DP G + E L KY+ ELK+GR++MLA LG+ VQ + +PDPVFS+ +KP+ AF +VL+ERP A +Q+ L + L+ + + EPG N+G PA + ++A L++KE+KN RLAM+ FMGM+ QE + G+
Sbjct: 4 VCAVALLAGSACAFVPSSFSGSALQAAVARPATMSMSVDAMLGADVEVGGV----FDPAGFSKDESKLAKYRAVELKHGRISMLACLGMWVQSAGIHMPDPVFSE-SKPIDAFFKVLSERPAAAIQVLLAITWLETVASKGDVGKEPGDVGNFGDNFKPADEADYAALQLKELKNGRLAMMGFMGMLVQEALTGQ 193
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: A0A835Z975_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z975_9STRA) HSP 1 Score: 134 bits (336), Expect = 5.490e-34 Identity = 87/206 (42.23%), Postives = 127/206 (61.65%), Query Frame = 3
Query: 192 ANKVAALALLAGSASAFIAP-ALPTRAVTS--RASTAVRMSLLDGVFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAMLAVLGVIVQYF-VQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIWEDSESSEPG---NYGFGIFPASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGKGPIENI 788
A+ + ALA +AG+ASAF+AP A AV + +AS+ V MS D + G ETGG +DP A E L KY+ ELK+GR++MLA LG+ VQ + +PDPVFS+ +KP+ AF +VL+ERP A +Q+ L + L+ + + EPG N+G PA + ++A L++KE+KN RLAM+ MGM+ QE + G+ +
Sbjct: 3 ASTIVALAAMAGTASAFVAPSAFNGVAVQAPVKASSTVVMSA-DAMIGADVETGGI----FDPANFAKDEGKLAKYRAVELKHGRISMLACLGMWVQSAGIHMPDPVFSE-SKPIDAFFKVLSERPAAAIQVLLAITWLETVAVKGDVGKEPGDVGNFGDNFKPADEGDYAALQLKELKNGRLAMMGIMGMLLQEALTGQSVFAQL 202
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: A0A835YT25_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT25_9STRA) HSP 1 Score: 127 bits (318), Expect = 2.870e-31 Identity = 85/204 (41.67%), Postives = 116/204 (56.86%), Query Frame = 3
Query: 201 VAALALLAGSASAFIAPALPTRAVTSRASTAVRMSLLDGVFGGTFETGGE-ECAPWDPLGLASSEK--LLKKYQIGELKNGRVAMLAVLGVIVQYFVQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNL--IWEDSESSEPGNYGF---GIFPASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGKGPIENI 788
VA LAL+AGS SAF+ A V SR++ V M L G G G + E A WDPLG +++ + Y+ ELK+GRVAMLA LG I Q + LPDPVFSQ A+P A QV AERP A+ QI L + + + + PG+ + + P+ E + ++++E+KN RLAM+A G QE + G+GPIE I
Sbjct: 6 VAGLALVAGSVSAFVQHAPLRTGVVSRSAGPV-MKLGPG---GEGLVGSDLELATWDPLGFTNNQNPDTINWYRAAELKHGRVAMLAALGEIFQSYYHLPDPVFSQSARPWDALQQVYAERPLAVAQILLAIFACEAIGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMMAIAGFFVQENLTGQGPIEQI 205
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: FCP_CHAMQ (Fucoxanthin-chlorophyll a-c binding protein, chloroplastic n=1 Tax=Chattonella marina var. antiqua TaxID=859642 RepID=FCP_CHAMQ) HSP 1 Score: 114 bits (284), Expect = 2.390e-26 Identity = 77/200 (38.50%), Postives = 111/200 (55.50%), Query Frame = 3
Query: 213 ALLAGSASAFIAPALPTRAVTSRASTAVRM-SLLDGVFGGTFETGGEECAPWDPLGLASSEK--LLKKYQIGELKNGRVAMLAVLGVIVQYFVQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIWEDSESSEPGNYG-------FGIFPASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGKGPIE 782
AL+ GSASAF+APA S + ++++ S +G+ G E +DPLG ++ L+ Y+ ELK+GRVAMLA LG +VQ F LPDPVFS+ AKP A +V ERP A +QI L + + + + ++PG + +++E F +++E+KN RLAMIA MI QE + G G IE
Sbjct: 9 ALMVGSASAFLAPAQFNSVAKSSGALSMKLGSSAEGLIGSDLEL-----PEFDPLGFTNNPAPGALEWYRAAELKHGRVAMLAALGQLVQSFYHLPDPVFSESAKPWQALVKVCNERPLAAVQIGLAIFACEAI--GQANQAKPGQAAGDLGWDPLNLRGSNEEIFERAQLRELKNGRLAMIAITAMIVQENLTGYGVIE 201 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1664.1.2 >prot_P-wetherbeei_contig1664.1.2 ID=prot_P-wetherbeei_contig1664.1.2|Name=mRNA_P-wetherbeei_contig1664.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp MSLLDGVFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAMLback to top mRNA from alignment at P-wetherbeei_contig1664:354..2822- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1664.1.2 ID=mRNA_P-wetherbeei_contig1664.1.2|Name=mRNA_P-wetherbeei_contig1664.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2469bp|location=Sequence derived from alignment at P-wetherbeei_contig1664:354..2822- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1664:354..2822- >mRNA_P-wetherbeei_contig1664.1.2 ID=mRNA_P-wetherbeei_contig1664.1.2|Name=mRNA_P-wetherbeei_contig1664.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig1664:354..2822- (Phaeothamnion wetherbeei SAG_119_79)back to top |