mRNA_P-wetherbeei_contig16631.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16631.1.1
Unique NamemRNA_P-wetherbeei_contig16631.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16631.1.1 vs. uniprot
Match: D7FKW9_ECTSI (Similar to Ubiquitin carboxyl-terminal hydrolase 15 (Ubiquitin thiolesterase 15) (Ubiquitin-specific processing protease 15) (Deubiquitinating enzyme 15) (Unph-2) (Unph4) isoform 11 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKW9_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.580e-23
Identity = 83/223 (37.22%), Postives = 103/223 (46.19%), Query Frame = 3 
Query:   15 RWRLLTSRQHRSTLAALRLQGGEKLMLEVWRDGTDHGDGESGGGGWPRAVHVEKPGWRRFALGDRVDAMDYQGRWYPGSVVNVEQVSTR----GEGAIAHKKK----------------------------------RSGGVDLAAAGGAESGTQTPQ---QPSPKETAPGTVAAAAATAAMNGQALRTRVRVHFDRFSSQWDEWYDAMSCRLAPETSQTAPA 560
            RWRL+ + +   TL+AL L GGEK+M+E       + DG+     W R  ++E PG+R+F   DRVDAMDYQGRW+ G VV V   S+      EG +  KK                                   R+ G   A AG   S         + S KE   G V              R RVRVHFDRF+ QWDEWYD+ S +LAPE S TAPA
Sbjct:  680 RWRLVKTEEEGMTLSALGLIGGEKVMVE-----NKNPDGK-----WQRRKYIESPGFRQFRENDRVDAMDYQGRWFRGQVVEVGSKSSSKIVDSEGPVGRKKSNRRQRLELDPPTEEPVREGANQEVEHLEPGDASDRNEGRSAAKAGAGRSXXXXXXXXXRSSGKER-DGGVGGKEGPRQGGPSRRRLRVRVHFDRFAPQWDEWYDSKSLKLAPEFSHTAPA 891
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BLAST of mRNA_P-wetherbeei_contig16631.1.1 vs. uniprot
Match: A0A7S1XW37_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XW37_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.710e-6
Identity = 50/160 (31.25%), Postives = 64/160 (40.00%), Query Frame = 3 
Query:  150 WPRAVHVEKPGWRRFALGDRVDAMDYQGRWYPGSVVNVEQVST------------------RGEGA----------IAHKKKRSGGVDLAAAGGAESGTQTPQQPSPKETAPGTVAAAAATAAMNGQALRTRVRVHFDRFSSQWDEWYDAMSCRLAPETS 545
            WPR    E P +R F +GD VDAMDY+G WY GS+  +  +                    + +GA          +   +  SGGV+     GA +G    +  S      G V A               VRVH+D F   WDEWY   S RLAP  S
Sbjct:  166 WPRDRFREAPDFRHFKVGDPVDAMDYRGYWYHGSIAAIVAMEAPVLSPALDPPLPRNEPLHKLDGARLSDFLNGRNVERLQPLSGGVN--GGDGAVNGEPWYEGDSGSGGGGGVVFA---------------VRVHYDAFPENWDEWYHPRSPRLAPRGS 308
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16631.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKW9_ECTSI1.580e-2337.22Similar to Ubiquitin carboxyl-terminal hydrolase 1... [more]
A0A7S1XW37_9STRA1.710e-631.25Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16631contigP-wetherbeei_contig16631:4..853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FKW9
PFAMsUCH
Model size610
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons2
Evalue2.36e-24
EggNOG OGsCOG5560@1|root,KOG1870@2759|Eukaryota
Descriptionubiquitinyl hydrolase activity
Cds size597
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186092.639676-CDS-P-wetherbeei_contig16631:3..3421683186092.639676-CDS-P-wetherbeei_contig16631:3..342Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16631 4..342 -
1683186092.6498814-CDS-P-wetherbeei_contig16631:584..8421683186092.6498814-CDS-P-wetherbeei_contig16631:584..842Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16631 585..842 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186092.658456-UTR-P-wetherbeei_contig16631:842..8531683186092.658456-UTR-P-wetherbeei_contig16631:842..853Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16631 843..853 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16631.1.1prot_P-wetherbeei_contig16631.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16631 4..842 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16631.1.1

>prot_P-wetherbeei_contig16631.1.1 ID=prot_P-wetherbeei_contig16631.1.1|Name=mRNA_P-wetherbeei_contig16631.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=199bp
MRWRLLTSRQHRSTLAALRLQGGEKLMLEVWRDGTDHGDGESGGGGWPRA
VHVEKPGWRRFALGDRVDAMDYQGRWYPGSVVNVEQVSTRGEGAIAHKKK
RSGGVDLAAAGGAESGTQTPQQPSPKETAPGTVAAAAATAAMNGQALRTR
VRVHFDRFSSQWDEWYDAMSCRLAPETSQTAPASVPPAPQVPRASAPAG
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mRNA from alignment at P-wetherbeei_contig16631:4..853-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16631.1.1 ID=mRNA_P-wetherbeei_contig16631.1.1|Name=mRNA_P-wetherbeei_contig16631.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=850bp|location=Sequence derived from alignment at P-wetherbeei_contig16631:4..853- (Phaeothamnion wetherbeei SAG_119_79)
CGAACGCCGTGATGCGGTGGCGGCTGCTGACGTCGCGGCAGCACCGATCG
ACGCTGGCAGCGCTGCGCCTGCAAGGCGGCGAGAAGCTCATGCTGGAGGT
CTGGCGTGACGGCACCGACCATGGCGATGGCGAAAGCGGCGGCGGCGGAT
GGCCACGGGCGGTGCACGTCGAGAAACCGGGATGGCGGCGCTTTGCTCTG
GGCGACCGGGTAGACGCAATGGACTACCAGGGACGCTGGTACCCGGGCAG
CGTCGTCAACGTCGAACAGGTGCGCGGTATTTAAATATTTGCCCTTTCCT
TTTCTTTCCATTTCCTGTTCAACAGCAAGCCCTGTGCGTTTATCTGCGAT
GCTTTTGCGAACCTCGCATGTGTGGGCTCGTTCCATCTCGGCAATGAAAG
CAGAAGCGGTCCGCGTGATGTCAATAGTATCAGCTTCAAGACTCCGGTGC
CCTTGAAATAGATTGGCGACTGCCCCGCGCTGCCCTCTTGAAACTTTTGG
TGGTTATGCAGGTGTCCACACGCGGCGAAGGCGCCATCGCTCACAAAAAG
AAGCGGTCCGGCGGCGTCGACTTGGCCGCGGCTGGCGGCGCCGAGAGCGG
CACCCAGACTCCGCAGCAGCCGTCGCCCAAGGAGACCGCCCCGGGAACAG
TGGCGGCGGCGGCGGCAACGGCGGCGATGAACGGGCAAGCCCTGCGGACG
CGGGTGCGCGTGCATTTCGACCGCTTCTCGAGCCAGTGGGACGAATGGTA
CGACGCCATGTCATGCAGGCTGGCGCCGGAGACCAGCCAGACGGCTCCGG
CATCGGTGCCGCCGGCGCCGCAGGTGCCCCGTGCGTCGGCGCCCGCCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16631:4..853-

>mRNA_P-wetherbeei_contig16631.1.1 ID=mRNA_P-wetherbeei_contig16631.1.1|Name=mRNA_P-wetherbeei_contig16631.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=597bp|location=Sequence derived from alignment at P-wetherbeei_contig16631:4..853- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGTGGCGGCTGCTGACGTCGCGGCAGCACCGATCGACGCTGGCAGC
GCTGCGCCTGCAAGGCGGCGAGAAGCTCATGCTGGAGGTCTGGCGTGACG
GCACCGACCATGGCGATGGCGAAAGCGGCGGCGGCGGATGGCCACGGGCG
GTGCACGTCGAGAAACCGGGATGGCGGCGCTTTGCTCTGGGCGACCGGGT
AGACGCAATGGACTACCAGGGACGCTGGTACCCGGGCAGCGTCGTCAACG
TCGAACAGGTGTCCACACGCGGCGAAGGCGCCATCGCTCACAAAAAGAAG
CGGTCCGGCGGCGTCGACTTGGCCGCGGCTGGCGGCGCCGAGAGCGGCAC
CCAGACTCCGCAGCAGCCGTCGCCCAAGGAGACCGCCCCGGGAACAGTGG
CGGCGGCGGCGGCAACGGCGGCGATGAACGGGCAAGCCCTGCGGACGCGG
GTGCGCGTGCATTTCGACCGCTTCTCGAGCCAGTGGGACGAATGGTACGA
CGCCATGTCATGCAGGCTGGCGCCGGAGACCAGCCAGACGGCTCCGGCAT
CGGTGCCGCCGGCGCCGCAGGTGCCCCGTGCGTCGGCGCCCGCCGGC
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