mRNA_P-wetherbeei_contig16621.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16621.1.1
Unique NamemRNA_P-wetherbeei_contig16621.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16621.1.1 vs. uniprot
Match: D7FMH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH1_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 8.470e-33
Identity = 74/141 (52.48%), Postives = 99/141 (70.21%), Query Frame = 1
Query:   10 RIRELTDFRKEALLRLPQVEREVEAMTVADSEAGWAENHEREWDMLHTCLQMAGEETRLQRCHQRRQTEQAAELRAEVDDLEGDLDESAVRQAELREKLRRLEVQRCTDAAGRDRSRAVRVERVRWAIKTTRRNVIRRRRQ 432
            RI++LT+FRKEA LRLP VER +E +TV D  AGW EN+EREWDML  C+ MA EE ++ R    +  +    L+ E+DD E D+D S+ R+A   E LRR+E+ R  + A RDRSRAVR E++RWA++  RRNVI+R R+
Sbjct:  107 RIKDLTEFRKEARLRLPLVERHIENLTVQDMAAGWGENYEREWDMLTNCMGMAFEEEKIMRVKIAKLEQDLQVLKLEIDDQEADMDASSCREASRMEALRRMEITRGLNQAARDRSRAVRREKMRWAVRDVRRNVIKRSRK 247          
BLAST of mRNA_P-wetherbeei_contig16621.1.1 vs. uniprot
Match: A0A1V9YAY5_9STRA (Carbon catabolite repressor protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAY5_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.120e-11
Identity = 57/149 (38.26%), Postives = 84/149 (56.38%), Query Frame = 1
Query:    1 SLQRIRELTDFRKEALLRLPQVEREVEAMTVADSEAGWAENHEREWDMLHTCLQMAGEETRLQRCHQRRQTEQAAELRAEVDDLEGDLDESAVRQAELREKLRRLEVQRCTDAAGRDRSRAVRVERVRWAIKTTRRNVIRRRRQATGAA 447
            +LQ I +L   R +  LR+P VE+E+  MT  D+  GWAE  E E  +LH    ++ EE   +R   R    + A L  E++DLE D +E  V +    E +RRLE+ R         +RAVR++RVRW +++ RR+V+ RR+ A  AA
Sbjct: 1328 ALQHIHDLKQMRLDWELRVPFVEKELAEMTPEDAARGWAEAFETEKVVLHFSRLLSAEEILSKREQIREYDAEIATLHMELEDLERDHEEFRVAETLQLETVRRLELARSGMHFAAATARAVRLQRVRWQVRSVRRHVLLRRQNAALAA 1476          
BLAST of mRNA_P-wetherbeei_contig16621.1.1 vs. uniprot
Match: A0A6G0WCH9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCH9_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.240e-10
Identity = 50/145 (34.48%), Postives = 84/145 (57.93%), Query Frame = 1
Query:    1 SLQRIRELTDFRKEALLRLPQVEREVEAMTVADSEAGWAENHEREWDMLHTCLQMAGEETRLQRCHQRRQTEQAAELRAEVDDLEGDLDESAVRQAELREKLRRLEVQRCTD---AAGRDRSRAVRVERVRWAIKTTRRNVIRRR 426
            +LQ+I ++   R +  LR+P++++E+ AMT  D E GW E  E E  ++H    ++ EE   ++   R    + A L+ E +DLE DL+E  + +  L E +RRLE+QR      AA R+   A+R +++RW + + R  +I+RR
Sbjct:  764 ALQQIHDIKQMRLDWELRVPELDKELAAMTRQDIERGWQEAFETEKIVIHFSRLLSAEEILSKKQQIREYDGEMATLKVECEDLERDLEEKVLDETMLLEDIRRLEMQRAAQQYVAASRE---AIRRQKLRWKVHSNRAKIIQRR 905          
BLAST of mRNA_P-wetherbeei_contig16621.1.1 vs. uniprot
Match: A0A2D4CEV1_PYTIN (Lactamase_B domain-containing protein n=4 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CEV1_PYTIN)

HSP 1 Score: 65.1 bits (157), Expect = 2.100e-9
Identity = 47/140 (33.57%), Postives = 77/140 (55.00%), Query Frame = 1
Query:   13 IRELTDFRKEALLRLPQVEREVEAMTVADSEAGWAENHEREWDMLHTCLQMAGEETRLQRCHQRRQTEQAAELRAEVDDLEGDLDESAVRQAELREKLRRLEVQRCTDAAGRDRSRAVRVERVRWAIKTTRRNVIRRRRQ 432
            ++EL + R E   R P VE+E+  +T  D + GW E  E E  +LH  L+++ E+   ++   R    +  +LR E++DLE DL+E  + +    +  R  E+Q         R R +R ++V WA++  RRNVIRR+R+
Sbjct: 1105 VKELKEMRIEWERRQPVVEKELAQLTSEDIDRGWGEAFETEKHVLHYSLELSVEDILSRKSQIREYDAEIDDLRLEIEDLERDLEECILGETMELQDYRESEMQHAHRMFAAARVREIRRQKVHWAVRNIRRNVIRRQRE 1244          
BLAST of mRNA_P-wetherbeei_contig16621.1.1 vs. uniprot
Match: A0A6H5KAU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAU5_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 8.730e-9
Identity = 42/97 (43.30%), Postives = 61/97 (62.89%), Query Frame = 1
Query:  142 MLHTCLQMAGEETRLQRCHQRRQTEQAAELRAEVDDLEGDLDESAVRQAELREKLRRLEVQRCTDAAGRDRSRAVRVERVRWAIKTTRRNVIRRRRQ 432
            ML  C+ MA EE ++ R    +  +    L+     LE D+D S+ R+A   E LRR+E+ R  + A RDRSRAVR+E++RWA++  RRNVI+R R+
Sbjct:    1 MLTNCMGMAFEEDKIMRVKIAKFEQDLQVLK-----LEADMDASSCREASRMEALRRMEITRGLNQAARDRSRAVRLEKMRWAVRDVRRNVIKRSRK 92          
BLAST of mRNA_P-wetherbeei_contig16621.1.1 vs. uniprot
Match: A0A5D6XJP8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJP8_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 9.700e-9
Identity = 49/144 (34.03%), Postives = 76/144 (52.78%), Query Frame = 1
Query:    1 SLQRIRELTDFRKEALLRLPQVEREVEAMTVADSEAGWAENHEREWDMLHTCLQMAGEETRLQRCHQRRQTEQAAELRAEVDDLEGDLDESAVRQAELREKLRRLEVQRCTDAAGRDRSRAVRVERVRWAIKTTRRNVIRRRRQ 432
            SL+RI+EL   R     R P V +E+E +T  D + GW E  E E  +L   L+++ E+   +R   R    +  +LR      E DL+E  + +    E  R +EV R        + R VRV+R+RW +K+ R+NV+RR+R+
Sbjct:  835 SLRRIKELKAMRLAWERRQPFVAKELEGLTEEDVDRGWGEAFETETHILRFSLELSVEDILSRRAQVREYDVEVDDLRIXXXXXERDLEECMLGETMELEAYRDVEVGRARSMVAAAKERNVRVQRIRWRVKSDRKNVVRRQRE 978          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16621.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FMH1_ECTSI8.470e-3352.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1V9YAY5_9STRA1.120e-1138.26Carbon catabolite repressor protein n=1 Tax=Achlya... [more]
A0A6G0WCH9_9STRA3.240e-1034.48Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A2D4CEV1_PYTIN2.100e-933.57Lactamase_B domain-containing protein n=4 Tax=Pyth... [more]
A0A6H5KAU5_9PHAE8.730e-943.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5D6XJP8_9STRA9.700e-934.03Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16621contigP-wetherbeei_contig16621:418..1198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009041122.1
PFAMsIQ
Model size447
Max annot lvl2759|Eukaryota
KEGG koko:K16743
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.36e-19
EggNOG OGs29C0P@1|root,2RJ48@2759|Eukaryota
DescriptionShort calmodulin-binding motif containing conserved Ile and Gln residues.
Cds size447
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186092.4415321-CDS-P-wetherbeei_contig16621:417..6571683186092.4415321-CDS-P-wetherbeei_contig16621:417..657Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16621 418..657 +
1683186092.4601312-CDS-P-wetherbeei_contig16621:991..11981683186092.4601312-CDS-P-wetherbeei_contig16621:991..1198Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16621 992..1198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16621.1.1prot_P-wetherbeei_contig16621.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16621 418..1198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16621.1.1

>prot_P-wetherbeei_contig16621.1.1 ID=prot_P-wetherbeei_contig16621.1.1|Name=mRNA_P-wetherbeei_contig16621.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
SLQRIRELTDFRKEALLRLPQVEREVEAMTVADSEAGWAENHEREWDMLH
TCLQMAGEETRLQRCHQRRQTEQAAELRAEVDDLEGDLDESAVRQAELRE
KLRRLEVQRCTDAAGRDRSRAVRVERVRWAIKTTRRNVIRRRRQATGAA
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mRNA from alignment at P-wetherbeei_contig16621:418..1198+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16621.1.1 ID=mRNA_P-wetherbeei_contig16621.1.1|Name=mRNA_P-wetherbeei_contig16621.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=781bp|location=Sequence derived from alignment at P-wetherbeei_contig16621:418..1198+ (Phaeothamnion wetherbeei SAG_119_79)
TCCTTGCAGAGAATTCGGGAGCTGACAGACTTCCGAAAGGAGGCGCTGCT CCGGCTGCCGCAGGTGGAGCGGGAGGTGGAGGCGATGACAGTGGCAGACT CGGAGGCGGGCTGGGCGGAGAACCACGAGCGCGAGTGGGACATGCTGCAC ACCTGCCTGCAGATGGCAGGCGAGGAGACGCGCCTCCAGCGCTGCCACCA GCGCCGCCAGACCGAGCAGGCCGCCGAGCTGCGGGCAGAGGTGAGCGTGT TAAAACATCACCCGCTGCTTGCTTTCTCTACCATCGGTCGGTGTCAGTTG ATCCCGCCACTGCCGCTGCTGCTGCGCTACATTTACCACTTCTGCCGTCG CCTCCAATTTGCAGCCAATGTCTCTGCAATCGCCGCCGCTGCGTTTGCCG TCGCTGCCATTCTTGCCGCCACTGCCGATGCCCCCACGTCCTTGGCAACG CTTCAAAGAACCCCACTAACACCTTCAACAGTTTCGGACCTACGCTACCA CCACGTCTGCCGTAACCTGCAACGGAACAGCCGCAACACCGCACAACCTC ACTACTATCAATCACACTTTTCAGGTGGACGACCTGGAGGGCGACCTGGA CGAGAGCGCCGTCCGTCAGGCGGAGCTGCGGGAGAAGCTGCGGCGGCTAG AGGTGCAGCGCTGCACCGACGCCGCCGGCCGCGACCGCAGTCGCGCCGTC CGCGTCGAGCGCGTCCGTTGGGCCATCAAGACCACCCGCCGCAACGTCAT CCGCCGCCGCCGCCAGGCCACGGGCGCCGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16621:418..1198+

>mRNA_P-wetherbeei_contig16621.1.1 ID=mRNA_P-wetherbeei_contig16621.1.1|Name=mRNA_P-wetherbeei_contig16621.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig16621:418..1198+ (Phaeothamnion wetherbeei SAG_119_79)
TCCTTGCAGAGAATTCGGGAGCTGACAGACTTCCGAAAGGAGGCGCTGCT
CCGGCTGCCGCAGGTGGAGCGGGAGGTGGAGGCGATGACAGTGGCAGACT
CGGAGGCGGGCTGGGCGGAGAACCACGAGCGCGAGTGGGACATGCTGCAC
ACCTGCCTGCAGATGGCAGGCGAGGAGACGCGCCTCCAGCGCTGCCACCA
GCGCCGCCAGACCGAGCAGGCCGCCGAGCTGCGGGCAGAGGTGGACGACC
TGGAGGGCGACCTGGACGAGAGCGCCGTCCGTCAGGCGGAGCTGCGGGAG
AAGCTGCGGCGGCTAGAGGTGCAGCGCTGCACCGACGCCGCCGGCCGCGA
CCGCAGTCGCGCCGTCCGCGTCGAGCGCGTCCGTTGGGCCATCAAGACCA
CCCGCCGCAACGTCATCCGCCGCCGCCGCCAGGCCACGGGCGCCGCA
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