mRNA_P-wetherbeei_contig1662.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1662.4.1
Unique NamemRNA_P-wetherbeei_contig1662.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1662.4.1 vs. uniprot
Match: A0A521YH33_9PROT (MarR family transcriptional regulator n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YH33_9PROT)

HSP 1 Score: 175 bits (444), Expect = 7.890e-54
Identity = 87/139 (62.59%), Postives = 107/139 (76.98%), Query Frame = 1
Query:    7 AFELEKHVFFWLTQVIAGRDRRLAEALDIHGLRAPEWRVLASLHARQRCSMSELAELASIDRSTLTRTVDRMQEAGWLTRLSDADDMRVTRLAPTAAGERLFARIWPAVDELNRAALAGLPDGAPELLRWTLEQMHRNL 423
            AFEL++H+FFWLTQVI  RDR+L +AL   GLR PEWR LA+++AR+RC+MSELA+L +IDR+TLTRTVDRM+ AGW+ R  D  DMRV RL+ +AAG RLFAR+WP V  LNRAA+ GL   A   LR TL +M  NL
Sbjct:    5 AFELDEHLFFWLTQVIGARDRQLNQALKGFGLRVPEWRALATIYARERCTMSELADLTTIDRTTLTRTVDRMEHAGWVARRPDESDMRVVRLSLSAAGARLFARVWPTVQRLNRAAVDGLSAQAVAQLRSTLSRMKSNL 143          
BLAST of mRNA_P-wetherbeei_contig1662.4.1 vs. uniprot
Match: A0A8J7T182_9PROT (Winged helix-turn-helix transcriptional regulator n=1 Tax=Candidatus Odyssella sp. TaxID=2589116 RepID=A0A8J7T182_9PROT)

HSP 1 Score: 144 bits (364), Expect = 2.180e-41
Identity = 73/138 (52.90%), Postives = 95/138 (68.84%), Query Frame = 1
Query:   10 FELEKHVFFWLTQVIAGRDRRLAEALDIHGLRAPEWRVLASLHARQRCSMSELAELASIDRSTLTRTVDRMQEAGWLTRLSDADDMRVTRLAPTAAGERLFARIWPAVDELNRAALAGLPDGAPELLRWTLEQMHRNL 423
            F L++HVF+W+T+VI  RDR+LA  L  HGLR PEWRVLA L +    +M ++A+ A++D +TL+RTVDR+  +G L RL D  D+RVTRLA T  G   F  +WP VDEL+R+ALA LP GAP+LL   L  M   L
Sbjct:   14 FALDRHVFYWITRVIGARDRQLAGKLRPHGLRVPEWRVLAFLFSLPHSAMGDVADAAALDHTTLSRTVDRLAASGLLARLPDPADLRVTRLALTEKGRARFEAVWPVVDELSRSALALLPAGAPDLLCAALRMMREGL 151          
BLAST of mRNA_P-wetherbeei_contig1662.4.1 vs. uniprot
Match: A0A8J7N052_9PROT (MarR family transcriptional regulator n=1 Tax=Candidatus Odyssella sp. TaxID=2589116 RepID=A0A8J7N052_9PROT)

HSP 1 Score: 142 bits (358), Expect = 2.450e-40
Identity = 74/138 (53.62%), Postives = 95/138 (68.84%), Query Frame = 1
Query:   10 FELEKHVFFWLTQVIAGRDRRLAEALDIHGLRAPEWRVLASLHARQRCSMSELAELASIDRSTLTRTVDRMQEAGWLTRLSDADDMRVTRLAPTAAGERLFARIWPAVDELNRAALAGLPDGAPELLRWTLEQMHRNL 423
            F+ E+H+F+W TQVI  RDR L +AL  +G+R PEWRVL  LH+R+  SMSE+A+ A+ID +TL+RTV ++ + G + RLS   D RVTRLA TAAG RL  RI P V  LN  A AGLP G  EL++W   +M  NL
Sbjct:   35 FDHERHLFYWFTQVIGRRDRHLNQALRPYGVRVPEWRVLGLLHSRRGLSMSEVADAAAIDPTTLSRTVAQLVKEGLVVRLSPVGDKRVTRLALTAAGLRLVERILPIVFRLNEIAFAGLPAGVVELMQWAFGRMRHNL 172          
BLAST of mRNA_P-wetherbeei_contig1662.4.1 vs. uniprot
Match: A0A2Z5J7K8_STRAR (HTH marR-type domain-containing protein n=1 Tax=Streptomyces atratus TaxID=1893 RepID=A0A2Z5J7K8_STRAR)

HSP 1 Score: 129 bits (324), Expect = 3.110e-35
Identity = 65/133 (48.87%), Postives = 84/133 (63.16%), Query Frame = 1
Query:   25 HVFFWLTQVIAGRDRRLAEALDIHGLRAPEWRVLASLHARQRCSMSELAELASIDRSTLTRTVDRMQEAGWLTRLSDADDMRVTRLAPTAAGERLFARIWPAVDELNRAALAGLPDGAPELLRWTLEQMHRNL 423
            H+FFW+TQV   RDR LA+     G+R  EWRVL S+  R   S+ E AE A++D +TLTRTVD M  +GWLTR  D  D+R+TRL  T  G  L  R+WP  + +N  A AGLPDGA +L+   L ++ R L
Sbjct:   44 HLFFWITQVAGRRDRLLAQEFRAFGVRVAEWRVLLSVSIRPGTSLKETAEYATVDPTTLTRTVDGMARSGWLTRNPDPADLRITRLELTDTGRDLLGRLWPVAERVNLQACAGLPDGAAQLMCHGLREVLRGL 176          
BLAST of mRNA_P-wetherbeei_contig1662.4.1 vs. uniprot
Match: A0A7Y6VXY8_9BRAD (MarR family transcriptional regulator n=1 Tax=Bradyrhizobium sp. 41S5 TaxID=1404443 RepID=A0A7Y6VXY8_9BRAD)

HSP 1 Score: 129 bits (324), Expect = 4.350e-35
Identity = 60/133 (45.11%), Postives = 89/133 (66.92%), Query Frame = 1
Query:   25 HVFFWLTQVIAGRDRRLAEALDIHGLRAPEWRVLASLHARQRCSMSELAELASIDRSTLTRTVDRMQEAGWLTRLSDADDMRVTRLAPTAAGERLFARIWPAVDELNRAALAGLPDGAPELLRWTLEQMHRNL 423
            H+FFW+TQ++  RDR LA      G+R PEWRV+ ++H R   +M+E+AE A+ID +TL+R++++M  AGW+ R +D  DMR+ RL  T  G+ LF ++WP  D +NR A   LP+GA +L+   L  +HR L
Sbjct:   44 HIFFWVTQIMGRRDRLLAREFRALGVRVPEWRVVLAVHVRPGITMTEVAEYATIDPTTLSRSMEQMIRAGWIERTADDQDMRILRLNLTNKGKELFDKLWPIADRINRIACQDLPEGAAQLMCLGLGTIHRGL 176          
BLAST of mRNA_P-wetherbeei_contig1662.4.1 vs. uniprot
Match: UPI0010099E27 (MarR family transcriptional regulator n=1 Tax=Bradyrhizobium tropiciagri TaxID=312253 RepID=UPI0010099E27)

HSP 1 Score: 125 bits (314), Expect = 2.100e-33
Identity = 59/133 (44.36%), Postives = 88/133 (66.17%), Query Frame = 1
Query:   25 HVFFWLTQVIAGRDRRLAEALDIHGLRAPEWRVLASLHARQRCSMSELAELASIDRSTLTRTVDRMQEAGWLTRLSDADDMRVTRLAPTAAGERLFARIWPAVDELNRAALAGLPDGAPELLRWTLEQMHRNL 423
            HVFFW+TQ++  RDR LA      G+R PEWRV+ ++  R   +M+E+AE A+ID +TL+R++++M  AGW+ R +D  DMR+ RL+ +  G  LF ++WP  D +NR A   LP+GA +L+   L  +HR L
Sbjct:   59 HVFFWITQIMGRRDRLLAREFRPLGVRVPEWRVVLAVQVRPGITMTEVAEYATIDPTTLSRSMEQMIRAGWIERTADHQDMRIMRLSLSKKGRELFDKLWPIADRVNRIACQDLPEGAAQLMCLGLGTIHRGL 191          
BLAST of mRNA_P-wetherbeei_contig1662.4.1 vs. uniprot
Match: A0A8J7N420_9PROT (Winged helix-turn-helix transcriptional regulator n=1 Tax=Candidatus Odyssella sp. TaxID=2589116 RepID=A0A8J7N420_9PROT)

HSP 1 Score: 103 bits (256), Expect = 3.250e-25
Identity = 53/139 (38.13%), Postives = 85/139 (61.15%), Query Frame = 1
Query:    7 AFELEKHVFFWLTQVIAGRDRRLAEALDIHGLRAPEWRVLASLHARQRCSMSELAELASIDRSTLTRTVDRMQEAGWLTRLSDADDMRVTRLAPTAAGERLFARIWPAVDELNRAALAGLPDGAPELLRWTLEQMHRNL 423
            AF+L++H+F+   Q+   RD++LA++L   GL  P+WRVLA+L  R  C+++ L++L  +DR+TL+RT+DRM++ G + R     D R   +   AAG  +  RIWP +   N  A+AG+       LR  +E+M  N+
Sbjct:   20 AFDLDRHIFYLFGQIYGRRDQQLAKSLRPFGLSVPQWRVLAALVDRGACTINRLSDLTVVDRTTLSRTLDRMEKNGLVARRRVEADKRSYEIRLAAAGRAMLRRIWPVMSYHNARAVAGIAPRELAQLRAVIEKMIANV 158          
BLAST of mRNA_P-wetherbeei_contig1662.4.1 vs. uniprot
Match: A0A0P6W507_9HYPH (HTH marR-type domain-containing protein n=3 Tax=Prosthecomicrobium hirschii TaxID=665126 RepID=A0A0P6W507_9HYPH)

HSP 1 Score: 96.7 bits (239), Expect = 9.750e-23
Identity = 55/139 (39.57%), Postives = 78/139 (56.12%), Query Frame = 1
Query:    7 AFELEKHVFFWLTQVIAGRDRRLAEALDIHGLRAPEWRVLASLHARQRCSMSELAELASIDRSTLTRTVDRMQEAGWLTRLSDADDMRVTRLAPTAAGERLFARIWPAVDELNRAALAGLPDGAPELLRWTLEQMHRNL 423
            AF L  H+F++ +Q++A R+RRL   L   G+    WR++A L+ +  CSM +LA+  S+DR++LT T+  M+  G ++R   A D R   L  T AG RLF RI P V      AL G+  G  E L   L +M  NL
Sbjct:   15 AFPLRDHLFYYFSQIMAHRNRRLNTELKPFGVDYARWRIMAVLNDQPGCSMQQLADTTSVDRTSLTHTLKLMEAEGLVSRTPRATDRRSVVLGLTEAGSRLFVRILPTVRAQTELALTGIGAGEAEGLMRLLARMAENL 153          
BLAST of mRNA_P-wetherbeei_contig1662.4.1 vs. uniprot
Match: A0A431N2E1_9HYPH (MarR family transcriptional regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A431N2E1_9HYPH)

HSP 1 Score: 90.9 bits (224), Expect = 2.660e-20
Identity = 56/140 (40.00%), Postives = 76/140 (54.29%), Query Frame = 1
Query:    4 AAFELEKHVFFWLTQVIAGRDRRLAEALDIHGLRAPEWRVLASLHARQRCSMSELAELASIDRSTLTRTVDRMQEAGWLTRLSDADDMRVTRLAPTAAGERLFARIWPAVDELNRAALAGLPDGAPELLRWTLEQMHRNL 423
            AAF LE H+F++++ V+A R++ L   L   G+    WRVLA L+    CSM ELAE +S+DR+TL  TV  M E G L+R  +  D R + L  T  G R    + P V +    AL GL     E LR  L ++  NL
Sbjct:   34 AAFSLENHLFYYVSLVLARRNKALNSELRRFGIDYSRWRVLAVLNEHAGCSMLELAEWSSVDRTTLAHTVRLMCEEGLLSRTREPRDRRRSILLLTPEGRRRLKSVLPLVTDQTERALQGLSKSEVETLRALLVRIGANL 173          
BLAST of mRNA_P-wetherbeei_contig1662.4.1 vs. uniprot
Match: A0A644T1J2_9ZZZZ (Multiple antibiotic resistance protein MarR n=4 Tax=root TaxID=1 RepID=A0A644T1J2_9ZZZZ)

HSP 1 Score: 77.8 bits (190), Expect = 1.880e-15
Identity = 49/130 (37.69%), Postives = 64/130 (49.23%), Query Frame = 1
Query:   34 FWLTQVIAGRDRRLAEALDIHGLRAPEWRVLASLHARQRCSMSELAELASIDRSTLTRTVDRMQEAGWLTRLSDADDMRVTRLAPTAAGERLFARIWPAVDELNRAALAGLPDGAPELLRWTLEQMHRNL 423
            F LT       RR  +     GL + +WRVL  L  R   S + LAE   I+  +++R VDRMQEAGW+ R  D +D RV R+         F       D+L   ALAGLP GA + L   L ++  NL
Sbjct:   13 FLLTDATRAIRRRFEQRATELGLSSAQWRVLVHLLRRGPLSQARLAEFLEIEPISVSRLVDRMQEAGWVEREPDPNDRRVKRVVAKRKAHAAFENARQIADDLYEQALAGLPPGALDTLTDALRRIIINL 142          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1662.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521YH33_9PROT7.890e-5462.59MarR family transcriptional regulator n=1 Tax=Beta... [more]
A0A8J7T182_9PROT2.180e-4152.90Winged helix-turn-helix transcriptional regulator ... [more]
A0A8J7N052_9PROT2.450e-4053.62MarR family transcriptional regulator n=1 Tax=Cand... [more]
A0A2Z5J7K8_STRAR3.110e-3548.87HTH marR-type domain-containing protein n=1 Tax=St... [more]
A0A7Y6VXY8_9BRAD4.350e-3545.11MarR family transcriptional regulator n=1 Tax=Brad... [more]
UPI0010099E272.100e-3344.36MarR family transcriptional regulator n=1 Tax=Brad... [more]
A0A8J7N420_9PROT3.250e-2538.13Winged helix-turn-helix transcriptional regulator ... [more]
A0A0P6W507_9HYPH9.750e-2339.57HTH marR-type domain-containing protein n=3 Tax=Pr... [more]
A0A431N2E1_9HYPH2.660e-2040.00MarR family transcriptional regulator n=1 Tax=Hyph... [more]
A0A644T1J2_9ZZZZ1.880e-1537.69Multiple antibiotic resistance protein MarR n=4 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1662contigP-wetherbeei_contig1662:3453..3875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1417296.U879_00510
PFAMsHTH_27,MarR,MarR_2
Model size423
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.84e-17
EggNOG OGsCOG1846@1|root,COG1846@2|Bacteria
DescriptionDNA-binding transcription factor activity
Cds size423
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186092.3011575-CDS-P-wetherbeei_contig1662:3452..38751683186092.3011575-CDS-P-wetherbeei_contig1662:3452..3875Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1662 3453..3875 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1662.4.1prot_P-wetherbeei_contig1662.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1662 3453..3875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1662.4.1

>prot_P-wetherbeei_contig1662.4.1 ID=prot_P-wetherbeei_contig1662.4.1|Name=mRNA_P-wetherbeei_contig1662.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=141bp
MAAFELEKHVFFWLTQVIAGRDRRLAEALDIHGLRAPEWRVLASLHARQR
CSMSELAELASIDRSTLTRTVDRMQEAGWLTRLSDADDMRVTRLAPTAAG
ERLFARIWPAVDELNRAALAGLPDGAPELLRWTLEQMHRNL
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mRNA from alignment at P-wetherbeei_contig1662:3453..3875-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1662.4.1 ID=mRNA_P-wetherbeei_contig1662.4.1|Name=mRNA_P-wetherbeei_contig1662.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig1662:3453..3875- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGCGTTCGAGCTCGAAAAGCACGTGTTCTTCTGGCTGACCCAGGT GATCGCCGGGCGCGACCGGCGGCTCGCCGAGGCGCTGGATATCCACGGCC TGCGCGCGCCCGAGTGGCGCGTGCTCGCGTCGCTGCATGCACGGCAGCGC TGCTCGATGAGCGAACTGGCCGAACTCGCCTCGATCGACCGCTCGACGCT GACCCGCACGGTGGACCGGATGCAGGAGGCCGGCTGGCTCACCCGCCTGT CGGACGCCGACGACATGCGTGTGACCCGGCTCGCGCCCACGGCCGCCGGG GAGAGGCTTTTTGCGCGCATCTGGCCGGCCGTGGATGAACTCAACCGCGC AGCCCTTGCGGGACTGCCGGACGGCGCCCCCGAACTGCTGCGCTGGACGC TGGAACAGATGCACCGCAATCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1662:3453..3875-

>mRNA_P-wetherbeei_contig1662.4.1 ID=mRNA_P-wetherbeei_contig1662.4.1|Name=mRNA_P-wetherbeei_contig1662.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig1662:3453..3875- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGCGTTCGAGCTCGAAAAGCACGTGTTCTTCTGGCTGACCCAGGT
GATCGCCGGGCGCGACCGGCGGCTCGCCGAGGCGCTGGATATCCACGGCC
TGCGCGCGCCCGAGTGGCGCGTGCTCGCGTCGCTGCATGCACGGCAGCGC
TGCTCGATGAGCGAACTGGCCGAACTCGCCTCGATCGACCGCTCGACGCT
GACCCGCACGGTGGACCGGATGCAGGAGGCCGGCTGGCTCACCCGCCTGT
CGGACGCCGACGACATGCGTGTGACCCGGCTCGCGCCCACGGCCGCCGGG
GAGAGGCTTTTTGCGCGCATCTGGCCGGCCGTGGATGAACTCAACCGCGC
AGCCCTTGCGGGACTGCCGGACGGCGCCCCCGAACTGCTGCGCTGGACGC
TGGAACAGATGCACCGCAATCTC
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