mRNA_P-wetherbeei_contig16584.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16584.1.1
Unique NamemRNA_P-wetherbeei_contig16584.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16584.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16584contigP-wetherbeei_contig16584:3..1321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1173
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionG2-like domain Myb transcription factor
Ec32 orthologEc-15_000410.1
Cds size813
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186091.3596942-CDS-P-wetherbeei_contig16584:2..7171683186091.3596942-CDS-P-wetherbeei_contig16584:2..717Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16584 3..717 -
1683186091.36941-CDS-P-wetherbeei_contig16584:864..9621683186091.36941-CDS-P-wetherbeei_contig16584:864..962Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16584 865..962 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186091.378529-UTR-P-wetherbeei_contig16584:962..13211683186091.378529-UTR-P-wetherbeei_contig16584:962..1321Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16584 963..1321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16584.1.1prot_P-wetherbeei_contig16584.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16584 3..962 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16584.1.1

>prot_P-wetherbeei_contig16584.1.1 ID=prot_P-wetherbeei_contig16584.1.1|Name=mRNA_P-wetherbeei_contig16584.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=271bp
MQVTLKSAFEKQRRLQQTIVSRVAALGLPYPNSGTPGLSGDGESSGGFGD
PSWMPARSSAAAQAVKLDRPFGSPRVGSGPGSGSALGVAGLAAAAAAALS
SPFDHDEFHPNTGGDGSSSGGGSAGGSAGGGSGYFDAGGAGGLRTLNPSG
GSFGVLNAGMAVEGGASGESMAAALGGRSPESILDSDVAIAAAAAAATAI
PTETVLKMEMQSHMSLHRQMMLRREDQLHLHPRQEAAVRDAAAVAAAAGP
AAAGRQCRAGGAPSGSGGGGS
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mRNA from alignment at P-wetherbeei_contig16584:3..1321-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16584.1.1 ID=mRNA_P-wetherbeei_contig16584.1.1|Name=mRNA_P-wetherbeei_contig16584.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1319bp|location=Sequence derived from alignment at P-wetherbeei_contig16584:3..1321- (Phaeothamnion wetherbeei SAG_119_79)
GCTGCTGCGGATCCCGGACGAGGTGCAGCGCATCATTCAAAAGTTGGAGA
ACCAGCAGCTCAAGCAAAATGTCGAGCTGGTGGCACAGGCAAGTCTCGTT
GGGATTCTTGCCATCTGCCTTTTTCGCCGTTGCTGTGACAGTTACGTGAA
GGGAAATCTTAATTAAGGAAAACGGCATCACAGTAGCGGGTGAACATGAC
ATCGGCGAAGTATGGGCTAGGACTGTTCTGAATTAAACATAGCGAAGGGA
GCTTCAAGGCCACAGTTGCTTCTTCCGAAATCGCGTGCTTTACCCTCCCT
TCTCCCTCTATCTGTCGTTATTTTCTCTTTATGCGCAGTGCGTGCAAGTG
AACTGCTCGATGCAGGTGACATTGAAGAGTGCTTTTGAGAAGCAGCGGCG
GCTGCAGCAGACCATCGTCAGCCGCGTCGCTGCGCTGGGGCTGCCTTACC
CCAACAGGTGCGGCCAATCGCGTCTGTGCGGTCGACCGTTACCGCCGCTG
GAAGTCTGCGTGCTGTTTTCCTTCATCGGGTTGCAGGTTGCCTCAATAGG
CTGATCTACCATTCTACTCCCTTCCTCCTCCTTGCCCATTTCCCCGTTGC
GCAGCGGCACGCCAGGGCTGTCGGGCGACGGTGAAAGCTCTGGCGGGTTT
GGCGACCCGTCATGGATGCCGGCGCGCAGCTCCGCCGCAGCACAGGCTGT
CAAGCTCGATCGGCCGTTTGGGAGCCCCCGCGTGGGAAGCGGGCCGGGTA
GCGGAAGCGCGCTGGGCGTCGCCGGCCTAGCGGCTGCCGCTGCTGCGGCG
CTGTCTTCGCCGTTCGACCATGATGAGTTTCACCCAAACACCGGCGGTGA
TGGCAGCAGCAGTGGCGGCGGTAGTGCTGGTGGCAGCGCTGGCGGCGGTT
CTGGATATTTCGACGCCGGCGGCGCTGGAGGACTCCGCACATTGAATCCA
TCTGGAGGAAGTTTTGGAGTGCTCAATGCTGGGATGGCAGTCGAAGGCGG
CGCGTCGGGGGAAAGCATGGCGGCTGCGCTTGGAGGGCGGTCGCCGGAAT
CGATTCTCGACAGCGACGTCGCCATCGCGGCAGCGGCGGCGGCGGCGACC
GCCATACCAACCGAGACGGTGCTTAAGATGGAAATGCAGAGCCACATGAG
CCTCCACCGGCAAATGATGCTTCGCCGCGAGGACCAGCTGCACTTACACC
CCCGGCAAGAAGCGGCTGTCCGCGACGCTGCCGCCGTCGCCGCCGCCGCG
GGCCCCGCCGCCGCTGGCAGACAGTGCAGAGCTGGAGGCGCCCCCAGCGG
CAGCGGCGGCGGCGGGAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16584:3..1321-

>mRNA_P-wetherbeei_contig16584.1.1 ID=mRNA_P-wetherbeei_contig16584.1.1|Name=mRNA_P-wetherbeei_contig16584.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=813bp|location=Sequence derived from alignment at P-wetherbeei_contig16584:3..1321- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGTGACATTGAAGAGTGCTTTTGAGAAGCAGCGGCGGCTGCAGCA
GACCATCGTCAGCCGCGTCGCTGCGCTGGGGCTGCCTTACCCCAACAGCG
GCACGCCAGGGCTGTCGGGCGACGGTGAAAGCTCTGGCGGGTTTGGCGAC
CCGTCATGGATGCCGGCGCGCAGCTCCGCCGCAGCACAGGCTGTCAAGCT
CGATCGGCCGTTTGGGAGCCCCCGCGTGGGAAGCGGGCCGGGTAGCGGAA
GCGCGCTGGGCGTCGCCGGCCTAGCGGCTGCCGCTGCTGCGGCGCTGTCT
TCGCCGTTCGACCATGATGAGTTTCACCCAAACACCGGCGGTGATGGCAG
CAGCAGTGGCGGCGGTAGTGCTGGTGGCAGCGCTGGCGGCGGTTCTGGAT
ATTTCGACGCCGGCGGCGCTGGAGGACTCCGCACATTGAATCCATCTGGA
GGAAGTTTTGGAGTGCTCAATGCTGGGATGGCAGTCGAAGGCGGCGCGTC
GGGGGAAAGCATGGCGGCTGCGCTTGGAGGGCGGTCGCCGGAATCGATTC
TCGACAGCGACGTCGCCATCGCGGCAGCGGCGGCGGCGGCGACCGCCATA
CCAACCGAGACGGTGCTTAAGATGGAAATGCAGAGCCACATGAGCCTCCA
CCGGCAAATGATGCTTCGCCGCGAGGACCAGCTGCACTTACACCCCCGGC
AAGAAGCGGCTGTCCGCGACGCTGCCGCCGTCGCCGCCGCCGCGGGCCCC
GCCGCCGCTGGCAGACAGTGCAGAGCTGGAGGCGCCCCCAGCGGCAGCGG
CGGCGGCGGGAGC
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