mRNA_P-wetherbeei_contig1658.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1658.4.1
Unique NamemRNA_P-wetherbeei_contig1658.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1658.4.1 vs. uniprot
Match: D7G1A8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1A8_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 3.620e-12
Identity = 68/173 (39.31%), Postives = 93/173 (53.76%), Query Frame = 3 
Query:   69 LKQILGGE--EDDAGWTDHVEKRRVVANTSGKKVTELINMSDLLAEEESLADRLQKEDIKQQLHAVRTKQEAKDESAAXXXXXXXXXXXXXXXXXXXXXXXAAGATKPEPALQSEKTAAPEAKKSGLAALASRDGPITTTAFGGSWRDRAREKEIQARTRVLDPNNDEAFPTL 581
            L++ILGG    +D GW D VEK+ VVA T GK V++LI+M+ L+ E+ES A +L+K+DIKQ  H  RT +EA+ +   XXXXXXXXX                 ATKP+  L  +      A+ +G                GG W+ R  E+E++ R   L  NN  AFP+L
Sbjct:   49 LQEILGGPGPAEDDGWDDVVEKKSVVA-TGGKHVSDLIDMTALMTEDESTAAKLEKQDIKQAFHDARTVKEAEKKEXXXXXXXXXXXT----------------ATKPK-GLSGDIFGGGAARSAG--------------GLGGGWKQRMEERELKQRQEALSVNNTSAFPSL 189
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1658.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1A8_ECTSI3.620e-1239.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1658contigP-wetherbeei_contig1658:3938..6283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1320
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_005190.1
Cds size1104
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1658.4.1prot_P-wetherbeei_contig1658.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1658 4092..5813 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186091.2695534-UTR-P-wetherbeei_contig1658:3937..40911683186091.2695534-UTR-P-wetherbeei_contig1658:3937..4091Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1658 3938..4091 -
1683186091.3121736-UTR-P-wetherbeei_contig1658:5813..58351683186091.3121736-UTR-P-wetherbeei_contig1658:5813..5835Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1658 5814..5835 -
1683186091.3215384-UTR-P-wetherbeei_contig1658:6243..62831683186091.3215384-UTR-P-wetherbeei_contig1658:6243..6283Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1658 6244..6283 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186091.2780073-CDS-P-wetherbeei_contig1658:4091..46411683186091.2780073-CDS-P-wetherbeei_contig1658:4091..4641Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1658 4092..4641 -
1683186091.2858427-CDS-P-wetherbeei_contig1658:4883..50981683186091.2858427-CDS-P-wetherbeei_contig1658:4883..5098Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1658 4884..5098 -
1683186091.2943075-CDS-P-wetherbeei_contig1658:5272..55121683186091.2943075-CDS-P-wetherbeei_contig1658:5272..5512Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1658 5273..5512 -
1683186091.3031716-CDS-P-wetherbeei_contig1658:5714..58131683186091.3031716-CDS-P-wetherbeei_contig1658:5714..5813Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1658 5715..5813 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1658.4.1

>prot_P-wetherbeei_contig1658.4.1 ID=prot_P-wetherbeei_contig1658.4.1|Name=mRNA_P-wetherbeei_contig1658.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=368bp
MILKQILGGEEDDAGWTDHVEKRRVVANTSGKKVTELINMSDLLAEEESL
ADRLQKEDIKQQLHAVRTKQEAKDESAAAAAATSAAAAPAAGAAAVAAVG
GAAGATKPEPALQSEKTAAPEAKKSGLAALASRDGPITTTAFGGSWRDRA
REKEIQARTRVLDPNNDEAFPTLGGAPAAAADKPKAAPQSVWASGTAAKV
VAAPAPSPKEEGEKDADVAATVINGATEEEAPADGAAASGGGADAEAPEA
ATAPTEKAAAGAADEGAIANSIEKAEPPAGAEATEAATSVPAPEAPKEAE
LPPPPPAMTAAAAAAPPAVETAAPAAPAEVETAAEAAPAAAAEEEDLISK
FGKKKKKKKKEGGAANA*
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mRNA from alignment at P-wetherbeei_contig1658:3938..6283-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1658.4.1 ID=mRNA_P-wetherbeei_contig1658.4.1|Name=mRNA_P-wetherbeei_contig1658.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2346bp|location=Sequence derived from alignment at P-wetherbeei_contig1658:3938..6283- (Phaeothamnion wetherbeei SAG_119_79)
GAGTCAACTACAACGTCGCTGATGGTGGCGAGAAGGATCGGTAAGTCATT
CTGTCCCATTAGGATTTGGTCCACACATGTGCAAACCAGAGAGAAATTGC
AGCGCGCGAATACGAGCCATTGTTGTACTGCGTCGGTCGTCCTTTTCTCT
TCATTTTAGCGCGGAGGTGTTCGAGTACGGTCCGGCTTGGCGTCAAATTT
CGCACTTGGGCTTCTCAATTCCATCGTTAAATTTTATCCTCTTGCGGCGC
TTGTTAGCCCTTTTTGGACCGTCCGCGAAGCGTATGGGGTGCTCGCCATG
AAGATTGGACTCATAGTTGTGGTGTGCTTTACAAGGTAGCCAATTTTATG
CCTATGCAGGTGGACGTTAGCCATCCGCGGCCGCGTGACAAATTAGCAAA
TACAGTGCTAATTTTCTTCTTTCATCTCGTGTTGCGCACGGAAAGCAGCG
ATGCGGCTCCAAAGGGCGACATGATATTGAAGCAAATCCTGGGCGGAGAG
GAAGACGACGCGGGATGGACGGACCACGTCGAAAAGCGCCGTGTGGTCGC
CAACACGTCTGGCAAAAAGGTACATCAAGGAAGGAACTCTCGCCTGAAGT
TTGTCAGGCCACGTTATGCTCCCCAATTCTTCGAAGGGGTATATCGCTGT
CGAAATGGGTTTCCTTTCCCTTCACCTTGATGCAAAGATCTTGCTGTAAT
ACCTTTTGCGACGACTTATGGTCTGAATGCGCGCTGACGGCAAGTATCGC
ATTGACCGTCACCTTTTCCAGGTGACGGAGTTGATCAATATGTCCGACCT
GCTGGCGGAGGAGGAGAGCCTGGCGGACCGGCTGCAGAAGGAAGACATCA
AGCAGCAGCTGCACGCTGTCCGCACCAAGCAGGAGGCAAAGGACGAGTCG
GCGGCGGCTGCGGCTGCCACGTCTGCCGCAGCTGCGCCGGCTGCCGGCGC
CGCCGCTGTTGCTGCCGTCGGCGGTGCTGCCGGTGCCACAAAGCCAGAGC
CCGCCTTGCAGGCACGTTGTGATTGCGGTATTTTGCGGCCGTCTCTTTGG
CGCCTCTGTGCATCTATTCTTTTTCCTCAAAAGTTTCACGGCAGTTTTTT
GCGTCGTTTCCGCAATAAAACGAGCGTTGTCTGCCACGTTCAATGCCTCA
CGCTTGGCAGCGACCGGAACGCTTCCCCCATTCAGTCCGAGAAGACGGCC
GCGCCCGAAGCGAAGAAGAGCGGGCTGGCGGCGCTGGCTTCCCGCGACGG
GCCAATTACGACGACGGCGTTCGGCGGCAGCTGGCGAGACCGGGCGAGGG
AAAAGGAGATCCAGGCGCGGACGCGGGTGCTGGATCCCAACAACGACGAG
GCCTTCCCGACGCTCGGCGGCGCTCCCGCTGCTGCGGCGGACAAGCCCAA
GTGCGTTTAATTCTTTTCTGTTGGAATGAGGACTTTCTTTTCGCCGGCAC
AGTAAGCGGTGCCAAAAGGGGAGGGGTGGTAGGCCGACCGGCACCGGTAG
TTGGCGTGTGCTTTGTTTCATTCTGTTTGTACTTTTGCTGTTCTTGCCAT
GGTACAAGCGTACCTTTAGATGCTTCCTTCGACACAGCGTTCTCACATAG
ATGTATGATTATCTTCTCATTTCGCCGTCCGGCAACGGCCAGGGCTGCAC
CACAGAGCGTTTGGGCATCAGGAACAGCGGCGAAGGTGGTGGCGGCGCCG
GCCCCGTCGCCAAAGGAGGAGGGCGAGAAGGATGCGGATGTGGCAGCCAC
AGTGATCAACGGAGCGACCGAGGAGGAGGCGCCTGCCGACGGCGCGGCTG
CCTCCGGCGGCGGAGCAGACGCCGAGGCGCCCGAGGCGGCAACGGCGCCA
ACGGAGAAAGCCGCCGCAGGTGCCGCTGACGAAGGGGCGATTGCGAATAG
CATCGAGAAGGCTGAGCCGCCCGCGGGTGCAGAGGCAACCGAAGCTGCGA
CCTCGGTGCCTGCGCCGGAGGCACCGAAGGAGGCGGAACTGCCGCCGCCG
CCGCCAGCGATGACGGCAGCTGCCGCGGCGGCGCCCCCGGCTGTGGAAAC
GGCGGCGCCAGCAGCCCCAGCGGAGGTGGAAACGGCGGCCGAGGCAGCGC
CAGCAGCGGCGGCGGAGGAAGAAGACCTGATCTCAAAGTTCGGAAAGAAG
AAGAAAAAGAAGAAAAAGGAGGGGGGGGCGGCGAATGCGTAGGCGCCACG
AATGCTATTGCACGGCCTGTCGTGTCCTGTCGCGTCTTTCCTTTCACTGG
GAGCAGGCCGAGAAGGTCGCGGGCAAAAGCGGCAGCGTCCTTCTTGTTTT
ACAGGTCTCAGCGCTCCGCTGCGCCTCGTTGGAAAAAAAGGAGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1658:3938..6283-

>mRNA_P-wetherbeei_contig1658.4.1 ID=mRNA_P-wetherbeei_contig1658.4.1|Name=mRNA_P-wetherbeei_contig1658.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1104bp|location=Sequence derived from alignment at P-wetherbeei_contig1658:3938..6283- (Phaeothamnion wetherbeei SAG_119_79)
ATGATATTGAAGCAAATCCTGGGCGGAGAGGAAGACGACGCGGGATGGAC
GGACCACGTCGAAAAGCGCCGTGTGGTCGCCAACACGTCTGGCAAAAAGG
TGACGGAGTTGATCAATATGTCCGACCTGCTGGCGGAGGAGGAGAGCCTG
GCGGACCGGCTGCAGAAGGAAGACATCAAGCAGCAGCTGCACGCTGTCCG
CACCAAGCAGGAGGCAAAGGACGAGTCGGCGGCGGCTGCGGCTGCCACGT
CTGCCGCAGCTGCGCCGGCTGCCGGCGCCGCCGCTGTTGCTGCCGTCGGC
GGTGCTGCCGGTGCCACAAAGCCAGAGCCCGCCTTGCAGTCCGAGAAGAC
GGCCGCGCCCGAAGCGAAGAAGAGCGGGCTGGCGGCGCTGGCTTCCCGCG
ACGGGCCAATTACGACGACGGCGTTCGGCGGCAGCTGGCGAGACCGGGCG
AGGGAAAAGGAGATCCAGGCGCGGACGCGGGTGCTGGATCCCAACAACGA
CGAGGCCTTCCCGACGCTCGGCGGCGCTCCCGCTGCTGCGGCGGACAAGC
CCAAGGCTGCACCACAGAGCGTTTGGGCATCAGGAACAGCGGCGAAGGTG
GTGGCGGCGCCGGCCCCGTCGCCAAAGGAGGAGGGCGAGAAGGATGCGGA
TGTGGCAGCCACAGTGATCAACGGAGCGACCGAGGAGGAGGCGCCTGCCG
ACGGCGCGGCTGCCTCCGGCGGCGGAGCAGACGCCGAGGCGCCCGAGGCG
GCAACGGCGCCAACGGAGAAAGCCGCCGCAGGTGCCGCTGACGAAGGGGC
GATTGCGAATAGCATCGAGAAGGCTGAGCCGCCCGCGGGTGCAGAGGCAA
CCGAAGCTGCGACCTCGGTGCCTGCGCCGGAGGCACCGAAGGAGGCGGAA
CTGCCGCCGCCGCCGCCAGCGATGACGGCAGCTGCCGCGGCGGCGCCCCC
GGCTGTGGAAACGGCGGCGCCAGCAGCCCCAGCGGAGGTGGAAACGGCGG
CCGAGGCAGCGCCAGCAGCGGCGGCGGAGGAAGAAGACCTGATCTCAAAG
TTCGGAAAGAAGAAGAAAAAGAAGAAAAAGGAGGGGGGGGCGGCGAATGC
GTAG
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