mRNA_P-wetherbeei_contig16573.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16573.1.1
Unique NamemRNA_P-wetherbeei_contig16573.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16573.1.1 vs. uniprot
Match: D7FW87_ECTSI (Flagellar associated protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW87_ECTSI)

HSP 1 Score: 251 bits (642), Expect = 1.280e-73
Identity = 146/237 (61.60%), Postives = 181/237 (76.37%), Query Frame = 1
Query:   10 LAEDGARVRAMREHLRNVVQEVAHTDALLGAKKRETETEEHMAALARREIGRYSQEARRLAAAADAARDDLHGAQDGIFRAGEAMDRFKLQMNWNQEELEQWALAARQKDEDAEALQRYRRADDAKAKELTLQIERLSRAVVEKRAALDATAAEGAAKQVEMDRTAEEFRELHAERQQLVKKWQETIEAMRRRDAEVTALGERYAAARAHRQARNELLKQNGQRLRLQQADN-EVRG 717
            LA++  RVR M EHL+NV QEV HT+AL+ AKK+E  TEEH+ ALA RE GRY+ +ARR    A+ A+D L+G Q+ IF A E MDRFKLQMNWNQEELEQWALAA+QK+ED  ALQ+Y RADD K K+L+LQ+ERLS++VV +RA L    AE +AKQVE+D TA +FR LHAERQ LV++WQ  I+ MRRRD E+ A+GE+YAAAR  R  R E L QN  RL++Q+ DN EV+G
Sbjct:  152 LADNRERVRIMEEHLKNVRQEVGHTNALMAAKKKEIATEEHLCALAAREAGRYTHDARRFVVEAEEAQDKLNGVQNAIFGANEEMDRFKLQMNWNQEELEQWALAAKQKEEDNLALQKYARADDVKIKDLSLQVERLSKSVVARRAELQNLEAESSAKQVELDNTAADFRRLHAERQDLVRQWQNAIDGMRRRDEEINAVGEKYAAARQVRATRIETLAQNAARLKMQRNDNKEVQG 388          
BLAST of mRNA_P-wetherbeei_contig16573.1.1 vs. uniprot
Match: A0A7S4D4Q2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4Q2_HETAK)

HSP 1 Score: 246 bits (627), Expect = 2.350e-72
Identity = 144/241 (59.75%), Postives = 185/241 (76.76%), Query Frame = 1
Query:    1 EARLAEDGARVRAMREHLRNVVQEVAHTDALLGAKKRETETEEHMAALARREIGRYSQEARRLAAAADAARDDLHGAQDGIFRAGEAMDRFKLQMNWNQEELEQWALAARQKDEDAEALQRYRRADDAKAKELTLQIERLSRAVVEKRAALDATAAEGAAKQVEMDRTAEEFRELHAERQQLVKKWQETIEAMRRRDAEVTALGERYAAARAHRQARNELLKQNGQRLRLQQADN-EVRGK 720
            E  L E  +RV+ M EHLRNV QEV HT+ALL +K +E  TEEH+A LA+RE  RY QEA RLA A + A+D L  AQ  +FR  E +DRFKLQMNWNQEELEQWALAA+QKDED  ALQ+Y RAD+AK K+LTLQIE++++AV+E++  L+A A +  AKQ+E+DR+AEEFR LHAER++LV++WQE IEA+RRRD E+ ALGERYA AR  +  + E + Q  +RL++ + +N EVRGK
Sbjct:   33 EIELDEFQSRVKVMDEHLRNVRQEVTHTNALLESKDKEIRTEEHLAQLAQRETARYVQEANRLARAIEDAQDRLSAAQGAVFRGNERLDRFKLQMNWNQEELEQWALAAKQKDEDNLALQKYTRADEAKIKDLTLQIEKMNQAVLERKRQLEAEATDTQAKQIELDRSAEEFRSLHAERRRLVQQWQEAIEALRRRDEEINALGERYADARRQKLEKAEAVAQQRERLKMHEGENAEVRGK 273          
BLAST of mRNA_P-wetherbeei_contig16573.1.1 vs. uniprot
Match: A0A835Z4G4_9STRA (Flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4G4_9STRA)

HSP 1 Score: 233 bits (595), Expect = 6.420e-68
Identity = 133/226 (58.85%), Postives = 174/226 (76.99%), Query Frame = 1
Query:   28 RVRAMREHLRNVVQEVAHTDALLGAKKRETETEEHMAALARREIGRYSQEARRLAAAADAARDDLHGAQDGIFRAGEAMDRFKLQMNWNQEELEQWALAARQKDEDAEALQRYRRADDAKAKELTLQIERLSRAVVEKRAALDATAAEGAAKQVEMDRTAEEFRELHAERQQLVKKWQETIEAMRRRDAEVTALGERYAAARAHRQARNELLKQNGQRLRLQQADN 705
            RV+ M EHL+NV QEV +T+ L+ AK++E  TE H+ ALA RE GRY QE +R+   A + RD L+  Q+ +F A EAMD+FKLQMNWNQ ELEQWALAARQKDED  AL+RYRR D+A+A+EL+LQIE+LS + VEKRA L + +A  AA QVE+DRTA  F++LH ERQ LV++WQ+ + AMRRRD E+  +G+++A A+A R AR EL++Q+ QRL+LQQ DN
Sbjct:   42 RVKIMEEHLKNVAQEVGNTNFLMEAKRKEITTEAHLKALADREAGRYGQELKRMDTEAASLRDKLNNVQNSMFMANEAMDQFKLQMNWNQGELEQWALAARQKDEDNLALERYRREDEARARELSLQIEKLSHSAVEKRAVLASMSAAAAAAQVELDRTAIAFKQLHKERQTLVRQWQDAVAAMRRRDEEIGGVGKKFAGAQARRAAREELVRQSAQRLKLQQEDN 267          
BLAST of mRNA_P-wetherbeei_contig16573.1.1 vs. uniprot
Match: A0A6T6VX58_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A6T6VX58_9STRA)

HSP 1 Score: 219 bits (558), Expect = 8.800e-63
Identity = 123/222 (55.41%), Postives = 167/222 (75.23%), Query Frame = 1
Query:   40 MREHLRNVVQEVAHTDALLGAKKRETETEEHMAALARREIGRYSQEARRLAAAADAARDDLHGAQDGIFRAGEAMDRFKLQMNWNQEELEQWALAARQKDEDAEALQRYRRADDAKAKELTLQIERLSRAVVEKRAALDATAAEGAAKQVEMDRTAEEFRELHAERQQLVKKWQETIEAMRRRDAEVTALGERYAAARAHRQARNELLKQNGQRLRLQQADN 705
            M EHL+NV QE+AHT  L+ AK +E  +E+H+  LA RE GR   E  +L   A+A +D+++  Q+ +F+  E +DRFKLQMNWNQEELEQWALAARQK+ED  AL++Y RAD+++ KELTLQIE++++AV  +R  LD    E  AKQ+E+D+TAEEFR+LHAERQQLV++WQE IEAMRRRD E+ A GER+A A+A  + +  +L+ + +RL+ QQ DN
Sbjct:    1 MEEHLKNVQQELAHTQQLVDAKNKEIASEDHLKQLAEREAGRVRLELSKLETRAEAVQDEMNIVQNHVFKGNERLDRFKLQMNWNQEELEQWALAARQKEEDNLALEKYTRADESRIKELTLQIEKVTKAVSARRVELDEEVTETQAKQIELDKTAEEFRQLHAERQQLVRQWQEAIEAMRRRDEEIAAAGERFAQAKADIEEKQAILQDHVERLKQQQDDN 222          
BLAST of mRNA_P-wetherbeei_contig16573.1.1 vs. uniprot
Match: A0A0W8CZ82_PHYNI (Coiled-coil domain-containing protein 39 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CZ82_PHYNI)

HSP 1 Score: 216 bits (550), Expect = 5.840e-61
Identity = 129/232 (55.60%), Postives = 167/232 (71.98%), Query Frame = 1
Query:   10 LAEDGARVRAMREHLRNVVQEVAHTDALLGAKKRETETEEHMAALARREIGRYSQEARRLAAAADAARDDLHGAQDGIFRAGEAMDRFKLQMNWNQEELEQWALAARQKDEDAEALQRYRRADDAKAKELTLQIERLSRAVVEKRAALDATAAEGAAKQVEMDRTAEEFRELHAERQQLVKKWQETIEAMRRRDAEVTALGERYAAARAHRQARNELLKQNGQRLRLQQADN 705
            LAE  +RV  M EHL+NV QE+ HT AL GAK +E E+EEHM  LA REIGR +QEA  L A A      L G Q  +F+  EAMD FKLQMNWNQ+E+EQWA+AARQK+EDA AL+RYRRAD+A+ KELTL +E+L++ +   +  +D  A E  AKQ+E+D+TAEEFR LHAER +LV +WQ T+EAMR RD E+T   E++A A+   Q++ ELL +  +RL+ Q+A N
Sbjct:  150 LAETRSRVEIMTEHLKNVQQELLHTQALHGAKLKEVESEEHMRQLAEREIGRVAQEAXVLDAEAAELERKLAGLQGSLFKGNEAMDAFKLQMNWNQDEMEQWAVAARQKEEDAMALERYRRADEARIKELTLALEKLTQQLTRAKREVDDEATETQAKQIELDKTAEEFRSLHAERAKLVAQWQSTLEAMRARDEEITQASEQFALAQRGLQSKQELLGEQKRRLQQQEAAN 381          
BLAST of mRNA_P-wetherbeei_contig16573.1.1 vs. uniprot
Match: H3H5S2_PHYRM (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=H3H5S2_PHYRM)

HSP 1 Score: 214 bits (545), Expect = 3.020e-60
Identity = 129/237 (54.43%), Postives = 171/237 (72.15%), Query Frame = 1
Query:   10 LAEDGARVRAMREHLRNVVQEVAHTDALLGAKKRETETEEHMAALARREIGRYSQEARRLAAAADAARDDLHGAQDGIFRAGEAMDRFKLQMNWNQEELEQWALAARQKDEDAEALQRYRRADDAKAKELTLQIERLSRAVVEKRAALDATAAEGAAKQVEMDRTAEEFRELHAERQQLVKKWQETIEAMRRRDAEVTALGERYAAARAHRQARNELLKQNGQRLRLQQ-ADNEVRG 717
            LAE  +RV  M EHL+NV QE+ HT AL GAK +E  +EEHM  LA+REIGR +QEA+ L A A      L G Q  +F+  EAMD FKLQMNWNQ+E+EQWA+AARQK+EDA AL+RYRRAD+A+ KELTL +E+L++ +   +  +D  A E  AKQ+E+D+TAEEFR LHAER +LV +WQ T+EAMR RD E+T   E++A A+   Q++ ELL    +RL+ Q+ A++E +G
Sbjct:  175 LAETASRVEIMTEHLKNVQQELLHTQALHGAKLKEVSSEEHMRQLAQREIGRVAQEAKVLDAEAAELERKLAGLQGSLFKGNEAMDAFKLQMNWNQDEMEQWAVAARQKEEDAMALERYRRADEARIKELTLALEKLTQQLARAKREVDDEATETQAKQIELDKTAEEFRSLHAERAKLVAQWQATLEAMRARDEEITQASEQFALAQRGFQSKQELLGDQKRRLKQQETANSEAQG 411          
BLAST of mRNA_P-wetherbeei_contig16573.1.1 vs. uniprot
Match: D0NV38_PHYIT (Flagella associated protein n=3 Tax=Phytophthora TaxID=4783 RepID=D0NV38_PHYIT)

HSP 1 Score: 214 bits (544), Expect = 3.030e-60
Identity = 127/232 (54.74%), Postives = 166/232 (71.55%), Query Frame = 1
Query:   10 LAEDGARVRAMREHLRNVVQEVAHTDALLGAKKRETETEEHMAALARREIGRYSQEARRLAAAADAARDDLHGAQDGIFRAGEAMDRFKLQMNWNQEELEQWALAARQKDEDAEALQRYRRADDAKAKELTLQIERLSRAVVEKRAALDATAAEGAAKQVEMDRTAEEFRELHAERQQLVKKWQETIEAMRRRDAEVTALGERYAAARAHRQARNELLKQNGQRLRLQQADN 705
            LAE  +RV  M EHL+NV QE+ HT AL GAK +E E+EEHM  LA REIGR +QEA+ L A A      L G Q  +F+  EAMD FKLQMNWNQ+E+EQWA+AARQK+EDA AL+RYRRAD+A+ KELTL +E+L++ +   +  +D  A E  AKQ+E+D+TAEEFR LHAER +LV +WQ T+EAMR RD E+T   E++A A+    ++ ELL +  +RL+ Q+  N
Sbjct:  102 LAETSSRVEIMTEHLKNVQQELLHTQALHGAKLKEVESEEHMRQLAEREIGRVAQEAKVLDAEAAELERKLAGLQGSLFKGNEAMDAFKLQMNWNQDEMEQWAVAARQKEEDAMALERYRRADEARIKELTLALEKLTQQLTRAKREVDDEATETQAKQIELDKTAEEFRSLHAERAKLVAQWQSTLEAMRARDEEITQASEQFALAQRGFLSKQELLGEQKRRLKQQETAN 333          
BLAST of mRNA_P-wetherbeei_contig16573.1.1 vs. uniprot
Match: A0A8K1CGU4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGU4_PYTOL)

HSP 1 Score: 214 bits (544), Expect = 3.720e-60
Identity = 121/232 (52.16%), Postives = 170/232 (73.28%), Query Frame = 1
Query:   10 LAEDGARVRAMREHLRNVVQEVAHTDALLGAKKRETETEEHMAALARREIGRYSQEARRLAAAADAARDDLHGAQDGIFRAGEAMDRFKLQMNWNQEELEQWALAARQKDEDAEALQRYRRADDAKAKELTLQIERLSRAVVEKRAALDATAAEGAAKQVEMDRTAEEFRELHAERQQLVKKWQETIEAMRRRDAEVTALGERYAAARAHRQARNELLKQNGQRLRLQQADN 705
            + E+ +RV  M EHL+NV QE+ HT  L  AK++E  +EEHM  LA REIGR +QE RR+ A  +   + L+  Q+ IF+  E MD+FKLQMNWNQ+E+EQW++AA+QK+EDA AL+RYRRAD++K KELTL+IE+L++ + + R   +  A E  AKQ+E+D+TAEEFR+LH ERQ+LV++WQ+TIE M+RRD E+TA  E+YA AR   Q + ++L +   RL+ Q  +N
Sbjct:  153 ITENSSRVEIMSEHLKNVKQELLHTQELHTAKQKEVLSEEHMKQLAEREIGRVAQEMRRMDAECNELENKLNTIQNFIFKGNEEMDKFKLQMNWNQDEMEQWSMAAKQKEEDAMALERYRRADESKIKELTLEIEKLTKTLQQHRRNAEDEATETQAKQIELDKTAEEFRQLHEERQKLVQQWQDTIETMKRRDEEITAASEQYALARQGLQQKKDILSEQKNRLKQQDQEN 384          
BLAST of mRNA_P-wetherbeei_contig16573.1.1 vs. uniprot
Match: A0A662XCZ9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XCZ9_9STRA)

HSP 1 Score: 211 bits (538), Expect = 2.930e-59
Identity = 125/232 (53.88%), Postives = 167/232 (71.98%), Query Frame = 1
Query:   10 LAEDGARVRAMREHLRNVVQEVAHTDALLGAKKRETETEEHMAALARREIGRYSQEARRLAAAADAARDDLHGAQDGIFRAGEAMDRFKLQMNWNQEELEQWALAARQKDEDAEALQRYRRADDAKAKELTLQIERLSRAVVEKRAALDATAAEGAAKQVEMDRTAEEFRELHAERQQLVKKWQETIEAMRRRDAEVTALGERYAAARAHRQARNELLKQNGQRLRLQQADN 705
            LAE  +RV  M EHL+NV QE+ HT AL GAK +E  +EEHM  LA+REIGR +QEA+ L A A      L G Q  +F+  EAMD FKLQMNWNQ+E+EQWA+AARQK+EDA AL+RYRRAD+++ KELTL +E+L++ +   R  ++  + E  AKQ+E+D+TAEEFR LHAER +LV +WQ T+EAMR RD E+T   E++A A+   Q++ ELL +  +RL+ Q+  N
Sbjct:  172 LAETSSRVEIMTEHLKNVQQELLHTQALHGAKLKEVASEEHMRQLAQREIGRVAQEAKALDAEAAELERKLGGVQGSLFKGNEAMDAFKLQMNWNQDEMEQWAVAARQKEEDALALERYRRADESRIKELTLALEKLTQQLTRARREVEDESTETQAKQIELDKTAEEFRALHAERAKLVSQWQGTLEAMRARDEELTQASEQFALAQRGLQSKQELLGEQRRRLKQQETAN 403          
BLAST of mRNA_P-wetherbeei_contig16573.1.1 vs. uniprot
Match: A0A3R7FY08_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FY08_9STRA)

HSP 1 Score: 209 bits (531), Expect = 2.300e-58
Identity = 123/232 (53.02%), Postives = 165/232 (71.12%), Query Frame = 1
Query:   10 LAEDGARVRAMREHLRNVVQEVAHTDALLGAKKRETETEEHMAALARREIGRYSQEARRLAAAADAARDDLHGAQDGIFRAGEAMDRFKLQMNWNQEELEQWALAARQKDEDAEALQRYRRADDAKAKELTLQIERLSRAVVEKRAALDATAAEGAAKQVEMDRTAEEFRELHAERQQLVKKWQETIEAMRRRDAEVTALGERYAAARAHRQARNELLKQNGQRLRLQQADN 705
            LAE  +RV  M EHL+NV QE+ HT AL  AK +E ++EEHM  LA+REIGR +QEA+ L   A      L G Q  +F+  E MD FKLQMNW Q+E+EQWA+AARQK+EDA AL+RYRRAD+ + KELTL +E+L++ +V+ +  +D  A E  AKQ+E+D+TAEEFR LHAER +LV +WQ T+EAMR RD E+T   E++A A+   Q+R E+L +  +RL+ Q+  N
Sbjct:  153 LAETKSRVEIMTEHLKNVQQELLHTQALHAAKLKEVDSEEHMRQLAQREIGRVAQEAKVLDTEAAELERKLAGLQGSLFKGNETMDAFKLQMNWKQDEMEQWAVAARQKEEDAMALERYRRADETRIKELTLALEKLTQQLVQAKREVDNEATETQAKQIELDKTAEEFRSLHAERAKLVSQWQGTLEAMRARDEEITQASEQFALAQRGLQSRQEILAEQKRRLKQQETAN 384          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16573.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW87_ECTSI1.280e-7361.60Flagellar associated protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S4D4Q2_HETAK2.350e-7259.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z4G4_9STRA6.420e-6858.85Flagellar associated protein n=1 Tax=Tribonema min... [more]
A0A6T6VX58_9STRA8.800e-6355.41Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A0W8CZ82_PHYNI5.840e-6155.60Coiled-coil domain-containing protein 39 n=8 Tax=P... [more]
H3H5S2_PHYRM3.020e-6054.43Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]
D0NV38_PHYIT3.030e-6054.74Flagella associated protein n=3 Tax=Phytophthora T... [more]
A0A8K1CGU4_PYTOL3.720e-6052.16Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662XCZ9_9STRA2.930e-5953.88Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A3R7FY08_9STRA2.300e-5853.02Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16573contigP-wetherbeei_contig16573:76..1501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FW87
Preferred nameCCDC39
Model size720
Max annot lvl2759|Eukaryota
KEGG koko:K13675
KEGG ReactionR09316
KEGG Pathwayko00514,map00514
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0001889,GO:0001947,GO:0002009,GO:0003007,GO:0003143,GO:0003341,GO:0003351,GO:0003352,GO:0003356,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007507,GO:0008150,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030317,GO:0030323,GO:0030324,GO:0031016,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032886,GO:0034622,GO:0035050,GO:0035082,GO:0035239,GO:0035295,GO:0035469,GO:0036159,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0048513,GO:0048562,GO:0048565,GO:0048568,GO:0048598,GO:0048729,GO:0048731,GO:0048732,GO:0048856,GO:0048870,GO:0050789,GO:0050794,GO:0051179,GO:0051270,GO:0051674,GO:0055123,GO:0060271,GO:0060285,GO:0060287,GO:0060429,GO:0060541,GO:0060562,GO:0060632,GO:0061008,GO:0061371,GO:0065003,GO:0065007,GO:0070286,GO:0070925,GO:0071840,GO:0071907,GO:0071910,GO:0072359,GO:0097014,GO:0097722,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons3
Evalue2.1e-74
EggNOG OGs2C32D@1|root,2QS0D@2759|Eukaryota
Ec32 ortholog descriptionflagellar associated protein
Ec32 orthologEc-01_003790.1
Descriptioninner dynein arm assembly
Cds size720
COG categoryS
CAZyGT31
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186091.1212435-CDS-P-wetherbeei_contig16573:75..3091683186091.1212435-CDS-P-wetherbeei_contig16573:75..309Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16573 76..309 -
1683186091.1312056-CDS-P-wetherbeei_contig16573:638..8421683186091.1312056-CDS-P-wetherbeei_contig16573:638..842Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16573 639..842 -
1683186091.1392608-CDS-P-wetherbeei_contig16573:1219..15011683186091.1392608-CDS-P-wetherbeei_contig16573:1219..1501Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16573 1220..1501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16573.1.1prot_P-wetherbeei_contig16573.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16573 76..1501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16573.1.1

>prot_P-wetherbeei_contig16573.1.1 ID=prot_P-wetherbeei_contig16573.1.1|Name=mRNA_P-wetherbeei_contig16573.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=240bp
EARLAEDGARVRAMREHLRNVVQEVAHTDALLGAKKRETETEEHMAALAR
REIGRYSQEARRLAAAADAARDDLHGAQDGIFRAGEAMDRFKLQMNWNQE
ELEQWALAARQKDEDAEALQRYRRADDAKAKELTLQIERLSRAVVEKRAA
LDATAAEGAAKQVEMDRTAEEFRELHAERQQLVKKWQETIEAMRRRDAEV
TALGERYAAARAHRQARNELLKQNGQRLRLQQADNEVRGK
back to top

mRNA from alignment at P-wetherbeei_contig16573:76..1501-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16573.1.1 ID=mRNA_P-wetherbeei_contig16573.1.1|Name=mRNA_P-wetherbeei_contig16573.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1426bp|location=Sequence derived from alignment at P-wetherbeei_contig16573:76..1501- (Phaeothamnion wetherbeei SAG_119_79)
GAGGCTCGGCTGGCGGAGGACGGCGCGCGCGTCAGAGCAATGCGCGAGCA CCTGCGCAACGTGGTTCAGGAGGTGGCGCACACGGACGCGCTGCTCGGCG CCAAGAAGCGCGAGACGGAGACGGAGGAGCACATGGCGGCGCTGGCGCGG CGGGAGATCGGGCGGTACTCGCAGGAGGCACGGCGGCTGGCGGCGGCTGC AGATGCGGCACGCGACGACCTGCACGGAGCGCAGGACGGCATCTTTCGGG CGGGCGAGGCCATGGACCGCTTCAAGCTCCAGGTGCGTTGGAGCGATCGC GACGCAGCAGCGGCTGACCGTGGAGGAGAATTGGGTTTCGCGGGAGGGGG AGGTTGACGGCTAGGGTAGAGGGCTAGGCGCGTTTTTGCCGGCCAGTTTT CCTTTTGTTGGGAGTTTGCTGCTGTTTACAGTACGGCGCCACCATTTCCT TCCTGCTTCAATTTTCTGGCCTCAAACGCAAAGACGCCCTCGTTCCCCAT CCTCTGACTTCCATTTCTGAGCGCCTAAGACGCTCTATCTAGTTCTCAGA GAACCCTGCACCAACCCTCTTCACCCCACTACATTTCTGAAATAAATTCC CTTTACCCGGTCCCCAAAGCCAATCCAATGACCGCAAACAATCATACTGC ACCCGGCAGATGAACTGGAATCAGGAGGAGCTGGAGCAATGGGCGCTAGC GGCGCGGCAGAAAGACGAGGACGCCGAGGCGCTGCAGCGGTACCGCCGCG CCGACGACGCCAAGGCGAAAGAACTTACGCTGCAGATCGAAAGGCTCAGT CGCGCCGTCGTCGAGAAGCGTGCTGCGCTCGACGCCACTGCCGCCGAGGG CGCCGCCAAGCAGGTGCGGTTCGGTTAGGTCGGCTCTGTCGAGCGAGGAA GGAGCATACCAGGTAGCAGGGTCAGCCGAGTCGGCGGCCAAGGACGGAGG AGGAGAAAACCCAAATGCGGCACGGGCTGACTGCTGGTTCGCTTCGCGTT GATGTCTCGGCTCGCAAGAAAGCGGTTGACGGCACAGACAGCCGAAAGTG TCGCCGCACCATCCATGCCCTCGTTCGCTTCAGCCCGCTTTGCGATTTCC ATCCACTCTTCTCATCCTTCTTTCATCGGCTCCATGCTACCTGCTTTCGT CACTTCTTTAATCCCCAAAACTTCTTCCTTCAAAAAATTCAGGTGGAGAT GGACCGGACGGCCGAGGAGTTCCGCGAGCTGCACGCCGAACGGCAGCAGC TCGTCAAGAAGTGGCAGGAGACTATTGAGGCCATGAGGCGCCGCGATGCC GAAGTCACAGCTCTCGGGGAGCGCTACGCGGCGGCCCGCGCCCACCGCCA GGCGCGCAACGAGCTGCTCAAGCAGAACGGTCAGCGGCTGCGGCTGCAGC AGGCCGACAACGAGGTGCGCGGGAAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig16573:76..1501-

>mRNA_P-wetherbeei_contig16573.1.1 ID=mRNA_P-wetherbeei_contig16573.1.1|Name=mRNA_P-wetherbeei_contig16573.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=720bp|location=Sequence derived from alignment at P-wetherbeei_contig16573:76..1501- (Phaeothamnion wetherbeei SAG_119_79)
GAGGCTCGGCTGGCGGAGGACGGCGCGCGCGTCAGAGCAATGCGCGAGCA
CCTGCGCAACGTGGTTCAGGAGGTGGCGCACACGGACGCGCTGCTCGGCG
CCAAGAAGCGCGAGACGGAGACGGAGGAGCACATGGCGGCGCTGGCGCGG
CGGGAGATCGGGCGGTACTCGCAGGAGGCACGGCGGCTGGCGGCGGCTGC
AGATGCGGCACGCGACGACCTGCACGGAGCGCAGGACGGCATCTTTCGGG
CGGGCGAGGCCATGGACCGCTTCAAGCTCCAGATGAACTGGAATCAGGAG
GAGCTGGAGCAATGGGCGCTAGCGGCGCGGCAGAAAGACGAGGACGCCGA
GGCGCTGCAGCGGTACCGCCGCGCCGACGACGCCAAGGCGAAAGAACTTA
CGCTGCAGATCGAAAGGCTCAGTCGCGCCGTCGTCGAGAAGCGTGCTGCG
CTCGACGCCACTGCCGCCGAGGGCGCCGCCAAGCAGGTGGAGATGGACCG
GACGGCCGAGGAGTTCCGCGAGCTGCACGCCGAACGGCAGCAGCTCGTCA
AGAAGTGGCAGGAGACTATTGAGGCCATGAGGCGCCGCGATGCCGAAGTC
ACAGCTCTCGGGGAGCGCTACGCGGCGGCCCGCGCCCACCGCCAGGCGCG
CAACGAGCTGCTCAAGCAGAACGGTCAGCGGCTGCGGCTGCAGCAGGCCG
ACAACGAGGTGCGCGGGAAA
back to top