mRNA_P-wetherbeei_contig16571.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16571.1.1
Unique NamemRNA_P-wetherbeei_contig16571.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16571.1.1 vs. uniprot
Match: A0A835YHP7_9STRA (ATP synthase regulation protein NCA2-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHP7_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.970e-26
Identity = 59/118 (50.00%), Postives = 84/118 (71.19%), Query Frame = 1
Query:    4 RSRRRIVLALQSVKGSLAAFLREHITEPAQAIYTELFNNKRASITDMPAIEDTRRSLQRMLVDFVAEKYPDLPAAERERIFREMDMSVVSLEYEKSIINAVRHVMSGDILRMLLIQVR 357
            R R  I  AL+  + SL  F+ EHI++P +AIY ELF N RA+I D  A++D+ +SL+RML  F+ E++P + A + + +   MDMS VS EYEKSI+ A+R ++SGDI+RMLLIQV+
Sbjct:  221 RRRAEIGAALRGARASLRTFVSEHISQPGRAIYDELFRNARATIDDAAALDDSSQSLRRMLEAFIRERHPGMAARDVDALVANMDMSTVSREYEKSIVTAMRSIVSGDIVRMLLIQVQ 338          
BLAST of mRNA_P-wetherbeei_contig16571.1.1 vs. uniprot
Match: A0A2D4CDF1_PYTIN (VOC domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDF1_PYTIN)

HSP 1 Score: 108 bits (270), Expect = 4.380e-25
Identity = 60/118 (50.85%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    4 RSRRRIVLALQSVKGSLAAFLREHITEPAQAIYTELFNNKRASITDMPAIEDTRRSLQRMLVDFVAEKYPDLPAAERERIFREMDMSVVSLEYEKSIINAVRHVMSGDILRMLLIQVR 357
            R++R    A+ + + +   FL EH+ EP QAI  E+  N++  I D  A+ DT+ SL+RML DFV +  P   + E +R+ REMDMSVVSL+YEK I NAVR++MSGDI+RMLLIQV+
Sbjct:  519 RNQREFQDAVSAARVAFEDFLTEHMIEPMQAIVAEVLLNQKPEIQDAAALRDTKESLRRMLADFVRDTNPTTNSEELQRVVREMDMSVVSLQYEKQIGNAVRNLMSGDIVRMLLIQVQ 636          
BLAST of mRNA_P-wetherbeei_contig16571.1.1 vs. uniprot
Match: G4ZBF5_PHYSP (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=G4ZBF5_PHYSP)

HSP 1 Score: 107 bits (267), Expect = 1.020e-24
Identity = 56/109 (51.38%), Postives = 82/109 (75.23%), Query Frame = 1
Query:   31 LQSVKGSLAAFLREHITEPAQAIYTELFNNKRASITDMPAIEDTRRSLQRMLVDFVAEKYPDLPAAERERIFREMDMSVVSLEYEKSIINAVRHVMSGDILRMLLIQVR 357
            + +++ +L  FL EH+ EP QAI+ E+  N++  I D  A+ DT++SL+RML DFV +  P++ +AE  RI  EMDMSVVSL+YEK + +AVR++M+GDI+RMLLIQV+
Sbjct:  335 IAAMRAALQEFLNEHMVEPLQAIFGEVVLNQKPEIQDAMALLDTKQSLRRMLSDFVKDTNPNVSSAEMNRIMDEMDMSVVSLQYEKQLASAVRNLMTGDIVRMLLIQVQ 443          
BLAST of mRNA_P-wetherbeei_contig16571.1.1 vs. uniprot
Match: D0NFE7_PHYIT (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=D0NFE7_PHYIT)

HSP 1 Score: 106 bits (265), Expect = 1.900e-24
Identity = 55/107 (51.40%), Postives = 80/107 (74.77%), Query Frame = 1
Query:   37 SVKGSLAAFLREHITEPAQAIYTELFNNKRASITDMPAIEDTRRSLQRMLVDFVAEKYPDLPAAERERIFREMDMSVVSLEYEKSIINAVRHVMSGDILRMLLIQVR 357
            +++ +L  F  EH+ EP QAI+ E+  N++  I D  A+ DT+ SL+RML DFV +  P +P+AE +RI  EMDMSVVSL+YEK + +AV+++M+GDI+RMLLIQV+
Sbjct:  336 AMRAALQEFFNEHMIEPLQAIFEEVVLNQKPEIQDAMALLDTKESLRRMLSDFVKDTNPKVPSAEMKRIMDEMDMSVVSLQYEKQLASAVKNLMTGDIVRMLLIQVQ 442          
BLAST of mRNA_P-wetherbeei_contig16571.1.1 vs. uniprot
Match: M4BLQ4_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BLQ4_HYAAE)

HSP 1 Score: 105 bits (261), Expect = 6.490e-24
Identity = 54/109 (49.54%), Postives = 81/109 (74.31%), Query Frame = 1
Query:   31 LQSVKGSLAAFLREHITEPAQAIYTELFNNKRASITDMPAIEDTRRSLQRMLVDFVAEKYPDLPAAERERIFREMDMSVVSLEYEKSIINAVRHVMSGDILRMLLIQVR 357
            + +++ +L  FL EH+ EP QAI+ E+  N++  I D  A+ DT++SL+RML DFV +  P++  A+ +RI  EMDMSVVSL+YEK +  AVR++++GDI+RMLLIQV+
Sbjct:  318 IAAMRAALRDFLNEHMIEPLQAIFVEVVLNQKPEIQDAMALLDTKQSLRRMLADFVKDTNPNVTQADMDRITNEMDMSVVSLQYEKQLTGAVRNLITGDIVRMLLIQVQ 426          
BLAST of mRNA_P-wetherbeei_contig16571.1.1 vs. uniprot
Match: A0A3F2RRH9_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RRH9_9STRA)

HSP 1 Score: 105 bits (261), Expect = 6.620e-24
Identity = 56/117 (47.86%), Postives = 84/117 (71.79%), Query Frame = 1
Query:    7 SRRRIVLALQSVKGSLAAFLREHITEPAQAIYTELFNNKRASITDMPAIEDTRRSLQRMLVDFVAEKYPDLPAAERERIFREMDMSVVSLEYEKSIINAVRHVMSGDILRMLLIQVR 357
            +++  +  + ++  +L  FL EH+ EP QAI+ E+  N++  I D  A+ DT++SL+RML DFV +  P++  AE  RI  EMDMSVVSL+YEK + +AVR++M+GDI+RMLLIQV+
Sbjct:  325 NQKEFLAGIATLSTALQDFLNEHMVEPLQAIFQEVVLNQKPEIQDAMALLDTKQSLRRMLSDFVKDTNPNVAHAEMNRIMDEMDMSVVSLQYEKQLASAVRNLMTGDIVRMLLIQVQ 441          
BLAST of mRNA_P-wetherbeei_contig16571.1.1 vs. uniprot
Match: A0A0N7L4J7_PLAHL (Nuclear control of ATP synthase 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L4J7_PLAHL)

HSP 1 Score: 104 bits (259), Expect = 1.230e-23
Identity = 55/107 (51.40%), Postives = 78/107 (72.90%), Query Frame = 1
Query:   37 SVKGSLAAFLREHITEPAQAIYTELFNNKRASITDMPAIEDTRRSLQRMLVDFVAEKYPDLPAAERERIFREMDMSVVSLEYEKSIINAVRHVMSGDILRMLLIQVR 357
            + + +L  FLREH+ EP QAI+ E+  N++  I D  A+ DT+ SL+RML DFV +  P +   E +RI  EMDMSVVSL+YEK + +AV+++M+GDI+RMLLIQV+
Sbjct:  330 ATRAALQDFLREHMLEPLQAIFEEVVLNQKPQIQDAMALLDTKESLRRMLSDFVKDTNPKVSREEMQRIMTEMDMSVVSLQYEKQLASAVKNLMTGDIVRMLLIQVQ 436          
BLAST of mRNA_P-wetherbeei_contig16571.1.1 vs. uniprot
Match: A0A8K1CMR2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMR2_PYTOL)

HSP 1 Score: 103 bits (258), Expect = 1.690e-23
Identity = 56/109 (51.38%), Postives = 79/109 (72.48%), Query Frame = 1
Query:   31 LQSVKGSLAAFLREHITEPAQAIYTELFNNKRASITDMPAIEDTRRSLQRMLVDFVAEKYPDLPAAERERIFREMDMSVVSLEYEKSIINAVRHVMSGDILRMLLIQVR 357
            L   + ++  FL EH+ EP QAI  E+  N++  I D  A+ DTR SLQRML DF  +  P++ ++E +RI ++MDMSVVSL+YEK + +AVR++MSGDI+RMLLIQV+
Sbjct:  329 LGKARLAMREFLNEHMIEPLQAIVGEVILNQKPEIQDAAALLDTRESLQRMLSDFARDTNPNITSSELQRIVKDMDMSVVSLQYEKQLGSAVRNLMSGDIVRMLLIQVQ 437          
BLAST of mRNA_P-wetherbeei_contig16571.1.1 vs. uniprot
Match: K3WDK6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WDK6_GLOUD)

HSP 1 Score: 103 bits (257), Expect = 2.310e-23
Identity = 57/119 (47.90%), Postives = 80/119 (67.23%), Query Frame = 1
Query:    1 FRSRRRIVLALQSVKGSLAAFLREHITEPAQAIYTELFNNKRASITDMPAIEDTRRSLQRMLVDFVAEKYPDLPAAERERIFREMDMSVVSLEYEKSIINAVRHVMSGDILRMLLIQVR 357
            F +++    A  + + +L  F  EH+ EP QAI  E+  N++  I D  A+ DT+ SLQRML DFV +  P +   E +R+  EMDMSVVSL+YEK + +AVR++MSGDI+RMLLIQV+
Sbjct:  320 FNNQKEFQAAATTFRTALQEFFNEHMIEPVQAIVGEVILNQKPEIQDPGALLDTKLSLQRMLSDFVKDTNPSVSKEELQRVMNEMDMSVVSLQYEKQLSSAVRNLMSGDIVRMLLIQVQ 438          
BLAST of mRNA_P-wetherbeei_contig16571.1.1 vs. uniprot
Match: H3GWX5_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GWX5_PHYRM)

HSP 1 Score: 103 bits (257), Expect = 2.320e-23
Identity = 54/109 (49.54%), Postives = 80/109 (73.39%), Query Frame = 1
Query:   31 LQSVKGSLAAFLREHITEPAQAIYTELFNNKRASITDMPAIEDTRRSLQRMLVDFVAEKYPDLPAAERERIFREMDMSVVSLEYEKSIINAVRHVMSGDILRMLLIQVR 357
            + + + +L  FL EH+ EP QAI+ E+  N++  I D  A+ DT++SL+RML DFV + +P +  AE  R+  EMDMSVVSL+YEK + +AV+++M+GDI+RMLLIQV+
Sbjct:  334 IAATRAALQDFLTEHMIEPLQAIFGEVVLNQKPEIQDAMALLDTKQSLRRMLSDFVKDTHPKISQAEMNRVMDEMDMSVVSLQYEKQLGSAVKNLMTGDIVRMLLIQVQ 442          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16571.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YHP7_9STRA1.970e-2650.00ATP synthase regulation protein NCA2-domain-contai... [more]
A0A2D4CDF1_PYTIN4.380e-2550.85VOC domain-containing protein n=1 Tax=Pythium insi... [more]
G4ZBF5_PHYSP1.020e-2451.38Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
D0NFE7_PHYIT1.900e-2451.40Uncharacterized protein n=14 Tax=Phytophthora TaxI... [more]
M4BLQ4_HYAAE6.490e-2449.54Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A3F2RRH9_9STRA6.620e-2447.86Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A0N7L4J7_PLAHL1.230e-2351.40Nuclear control of ATP synthase 2 n=1 Tax=Plasmopa... [more]
A0A8K1CMR2_PYTOL1.690e-2351.38Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WDK6_GLOUD2.310e-2347.90Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
H3GWX5_PHYRM2.320e-2349.54Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16571contigP-wetherbeei_contig16571:132..1150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog67593.Physo141775
PFAMsNCA2
Model size357
Max annot lvl4776|Peronosporales
KEGG koko:K18158
Hectar predicted targeting categorysignal peptide
Exons3
Evalue1.66e-25
EggNOG OGs28M9W@1|root,2QQIS@2759|Eukaryota,3Q9WH@4776|Peronosporales
DescriptionATP synthase regulation protein NCA2
Cds size357
COG categoryS
BRITEko00000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186091.0228214-CDS-P-wetherbeei_contig16571:131..2971683186091.0228214-CDS-P-wetherbeei_contig16571:131..297Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16571 132..297 -
1683186091.0432978-CDS-P-wetherbeei_contig16571:621..7191683186091.0432978-CDS-P-wetherbeei_contig16571:621..719Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16571 622..719 -
1683186091.0560162-CDS-P-wetherbeei_contig16571:1057..11501683186091.0560162-CDS-P-wetherbeei_contig16571:1057..1150Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16571 1058..1150 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16571.1.1prot_P-wetherbeei_contig16571.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16571 132..1150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16571.1.1

>prot_P-wetherbeei_contig16571.1.1 ID=prot_P-wetherbeei_contig16571.1.1|Name=mRNA_P-wetherbeei_contig16571.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=119bp
FRSRRRIVLALQSVKGSLAAFLREHITEPAQAIYTELFNNKRASITDMPA
IEDTRRSLQRMLVDFVAEKYPDLPAAERERIFREMDMSVVSLEYEKSIIN
AVRHVMSGDILRMLLIQVR
back to top

mRNA from alignment at P-wetherbeei_contig16571:132..1150-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16571.1.1 ID=mRNA_P-wetherbeei_contig16571.1.1|Name=mRNA_P-wetherbeei_contig16571.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1019bp|location=Sequence derived from alignment at P-wetherbeei_contig16571:132..1150- (Phaeothamnion wetherbeei SAG_119_79)
TTCCGGTCCAGGCGGCGCATTGTTTTGGCCCTACAGAGCGTCAAGGGCAG CCTGGCGGCCTTTCTGAGGGAGCATATTACGGAGCCCGCTCAGGTGAGTT CGGATCTGTGGAACGATCGATCGGTTGCGCCTGCGATATGGCGGGTGGCA CCTCCAGATTCAAGAGGCAGCGTGATCGCATTCGGGGTGTCGGCGCCCGG TCGGCCAGGGCACTTTTGATGTCGTTGTCAATCAAGTGCCAGCGGAGCTG AGCGCATGTTGATGGCTCCCCAAGCTGCCCCTGCCAGCCGATTACAGCGT TTCTTCTTTTGTCCCAAAAGTTCCGCTTTTGGCATATATGTTTGGTGTAT GGTCGTCTGCGAACATTCCCCATCCGGTATGTTCTGCTGCAACATCCACT CTCTGACTCACTCGCATTGCGGCGGCCACAGGCAATATATACCGAGCTCT TCAACAACAAGCGGGCGTCCATCACGGACATGCCGGCCATCGAGGACACC AGGCGGAGCCTCCAGCGCATGCTCGTCGAGTGAGTAGATCGTTTATAGGC AGGAGAGCTTTGATTTTGGCTGCCACATTCCTTTGCTCCACTGCCCTGCC GGGATTTTTCTTTGCGCTGAAAACAGCCACGCGCTTGTGCTGCACCGAGA CATGTTCTGCTATTCTTCTTTTATCCAATGTCAGCCAGTATCATTCGACC CCTCTGCGGTCATAAGTCGGCTTATGCATCTTCCCGCCTGCCCTTTATGC CCGCCTTCCTCTATTCCCGGTTCTTCCCTCCCTTTCGCAAACCCCCTGCG AAACGAACAAAATCCATGTAACCAACCAACCAACGGCCGTCCGGCCGAAG CAGCTTCGTCGCGGAGAAGTATCCGGATCTGCCGGCAGCGGAGCGGGAGC GCATCTTCCGGGAGATGGACATGTCGGTGGTGTCGCTTGAGTATGAAAAG TCCATCATCAACGCCGTGCGCCACGTCATGTCCGGGGACATCCTGCGCAT GCTCCTCATCCAGGTGCGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig16571:132..1150-

>mRNA_P-wetherbeei_contig16571.1.1 ID=mRNA_P-wetherbeei_contig16571.1.1|Name=mRNA_P-wetherbeei_contig16571.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig16571:132..1150- (Phaeothamnion wetherbeei SAG_119_79)
TTCCGGTCCAGGCGGCGCATTGTTTTGGCCCTACAGAGCGTCAAGGGCAG
CCTGGCGGCCTTTCTGAGGGAGCATATTACGGAGCCCGCTCAGGCAATAT
ATACCGAGCTCTTCAACAACAAGCGGGCGTCCATCACGGACATGCCGGCC
ATCGAGGACACCAGGCGGAGCCTCCAGCGCATGCTCGTCGACTTCGTCGC
GGAGAAGTATCCGGATCTGCCGGCAGCGGAGCGGGAGCGCATCTTCCGGG
AGATGGACATGTCGGTGGTGTCGCTTGAGTATGAAAAGTCCATCATCAAC
GCCGTGCGCCACGTCATGTCCGGGGACATCCTGCGCATGCTCCTCATCCA
GGTGCGG
back to top