mRNA_P-wetherbeei_contig16549.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16549.1.1
Unique NamemRNA_P-wetherbeei_contig16549.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16549.1.1 vs. uniprot
Match: UPI0019A7BFCB (DUF2336 domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI0019A7BFCB)

HSP 1 Score: 189 bits (481), Expect = 1.730e-56
Identity = 97/141 (68.79%), Postives = 115/141 (81.56%), Query Frame = 1
Query:    1 FLVSKKMLTPSIILRAAAIGEMKMVQWSLAHLSGVGLARAHELMLGRGFMGLKSLHSKSGLPQSCYGLLMAACDVMKDAKEEGLPLDPESFGRRLIEALMTRYENMQSAERGKNLEFIGRFAEDRVRKIAKRLRADMVRAA 423
            FLVSK MLTPSIILRAA +GEM +V+ +LAHL+GV +A+A + M GRG  G K LH KSGLPQSCYG+L AACDV  D +EEG+ LD E FGRRLIEALMTRYE+M   +R ++LEF+GRFAEDRVR IAKRL+AD+ RAA
Sbjct:  248 FLVSKAMLTPSIILRAACLGEMHVVERALAHLAGVPVAKARDQMAGRGMSGFKGLHGKSGLPQSCYGILQAACDVANDEREEGIALDAEGFGRRLIEALMTRYESMPLKDRARHLEFVGRFAEDRVRVIAKRLKADIARAA 388          
BLAST of mRNA_P-wetherbeei_contig16549.1.1 vs. uniprot
Match: A0A847ZWL2_9HYPH (DUF2336 domain-containing protein n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A847ZWL2_9HYPH)

HSP 1 Score: 156 bits (395), Expect = 1.080e-43
Identity = 83/141 (58.87%), Postives = 110/141 (78.01%), Query Frame = 1
Query:    1 FLVSKKMLTPSIILRAAAIGEMKMVQWSLAHLSGVGLARAHELMLGRGFMGLKSLHSKSGLPQSCYGLLMAACDVMKDAKEEGLPLDPESFGRRLIEALMTRYENMQSAERGKNLEFIGRFAEDRVRKIAKRLRADMVRAA 423
            FL +K +LTP++I+RAA +GEM++V+ SLAHLSG   ARA  LM  RG  G+KS+ SK GLPQSC G+L A  DV+ +A+EEGL L  E+FGRRL+EALMTRYE +   +R K +E++GRFAE+RVRKIA++L+ D+ RAA
Sbjct:  247 FLAAKNLLTPALIIRAACLGEMRVVEASLAHLSGYAPARAASLMYARG--GMKSMVSKCGLPQSCAGVLSAFADVVVEAREEGLSLSRENFGRRLLEALMTRYEMLSPHDRAKQIEYVGRFAEERVRKIARQLKNDIQRAA 385          
BLAST of mRNA_P-wetherbeei_contig16549.1.1 vs. uniprot
Match: UPI0018C4971B (DUF2336 domain-containing protein n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=UPI0018C4971B)

HSP 1 Score: 140 bits (352), Expect = 2.750e-37
Identity = 71/141 (50.35%), Postives = 99/141 (70.21%), Query Frame = 1
Query:    1 FLVSKKMLTPSIILRAAAIGEMKMVQWSLAHLSGVGLARAHELMLGRGFMGLKSLHSKSGLPQSCYGLLMAACDVMKDAKEEGLPLDPESFGRRLIEALMTRYENMQSAERGKNLEFIGRFAEDRVRKIAKRLRADMVRAA 423
            FL +K +LTP+ I+RAAA G+M +V+ +LAHLSG+    A   M        KSL  +SGLPQ C+G L AACDV+ + +EEGL +    FG R++EALMTRYE M  A+R + +E++GRF ED++RK+AKR++ D +RAA
Sbjct:  251 FLAAKNLLTPAFIVRAAATGQMTIVEAALAHLSGLRGQEAAAQMYALNGNAFKSLFRRSGLPQGCFGFLRAACDVVIEIQEEGLDISSTEFGGRVLEALMTRYEAMSPADRARQIEYLGRFGEDKIRKVAKRVKVDFLRAA 391          
BLAST of mRNA_P-wetherbeei_contig16549.1.1 vs. uniprot
Match: A0A2W2BLR9_9HYPH (Uncharacterized protein n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2BLR9_9HYPH)

HSP 1 Score: 118 bits (295), Expect = 5.780e-29
Identity = 65/141 (46.10%), Postives = 92/141 (65.25%), Query Frame = 1
Query:    1 FLVSKKMLTPSIILRAAAIGEMKMVQWSLAHLSGVGLARAHELMLGRGFMGLKSLHSKSGLPQSCYGLLMAACDVMKDAKEEGLPLDPESFGRRLIEALMTRYENMQSAERGKNLEFIGRFAEDRVRKIAKRLRADMVRAA 423
            FL+  ++LTPS+I+ AA  G M +V   LA LSG+   +  E +  RG   L++LH++ GLP SCY  L AACDV  D +E+GL    + FG  +IE L+TRY  M  AE+ +NL F+GR+A +R R +A RL+AD+ +AA
Sbjct:  252 FLIDNQLLTPSLIVHAACQGAMPVVIECLAQLSGLPPRKVEEQVYQRGR--LRALHARCGLPDSCYWTLQAACDVAADEREDGLNHSADEFGAHIIETLLTRYAAMPPAEQPRNLAFLGRYAAERTRHLATRLKADLQQAA 390          
BLAST of mRNA_P-wetherbeei_contig16549.1.1 vs. uniprot
Match: A0A6G6X2N8_9HYPH (DUF2336 domain-containing protein n=1 Tax=Nordella sp. HKS 07 TaxID=2712222 RepID=A0A6G6X2N8_9HYPH)

HSP 1 Score: 117 bits (292), Expect = 1.460e-28
Identity = 67/141 (47.52%), Postives = 93/141 (65.96%), Query Frame = 1
Query:    1 FLVSKKMLTPSIILRAAAIGEMKMVQWSLAHLSGVGLARAHELMLGRGFMGLKSLHSKSGLPQSCYGLLMAACDVMKDAKEEGLPLDPESFGRRLIEALMTRYENMQSAERGKNLEFIGRFAEDRVRKIAKRLRADMVRAA 423
            F+ S+ ML  SII+R+A  G M++V+ ++AHL+ V LA+A + + G G     SL+  SGLPQ+C GLL AA  V ++ ++    L  ESFGRRLIE +MT    M +AER K L+ +GR++ DRVR IA RLR  +V AA
Sbjct:  246 FMTSRNMLNASIIMRSACAGNMRIVEVAMAHLANVSLAKAQDALYG-GSSAFNSLYRGSGLPQTCIGLLRAAGQVERELRDAKRILSDESFGRRLIEQIMTGDGAMSAAERAKYLDIVGRYSSDRVRVIASRLREGLVSAA 385          
BLAST of mRNA_P-wetherbeei_contig16549.1.1 vs. uniprot
Match: UPI0019085B84 (DUF2336 domain-containing protein n=1 Tax=Aestuariivirga sp. YIM B02566 TaxID=2800327 RepID=UPI0019085B84)

HSP 1 Score: 108 bits (270), Expect = 2.210e-25
Identity = 60/141 (42.55%), Postives = 93/141 (65.96%), Query Frame = 1
Query:    1 FLVSKKMLTPSIILRAAAIGEMKMVQWSLAHLSGVGLARAHELMLGRGFMGLKSLHSKSGLPQSCYGLLMAACDVMKDAKEEGLPLDPESFGRRLIEALMTRYENMQSAERGKNLEFIGRFAEDRVRKIAKRLRADMVRAA 423
            F+  + MLT S+++R+A +G M++V+ ++AHL+ V +A+A + + G       SL+  SGLPQ+C GL+ AA  V ++ ++    L  E+F RRLIE +MT    M +AER K L+FIGR++ +R+R IA RLR  +V AA
Sbjct:  246 FMTGRSMLTASMVMRSACVGNMRIVESAVAHLANVTVAKAQDALYGS-TSAFNSLYRNSGLPQTCTGLIRAAGQVERELRDAKRVLSEENFARRLIEQVMTGDGAMPAAERAKYLDFIGRYSGERIRLIANRLREGLVSAA 385          
BLAST of mRNA_P-wetherbeei_contig16549.1.1 vs. uniprot
Match: A0A3B0SA49_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0SA49_9ZZZZ)

HSP 1 Score: 100 bits (250), Expect = 1.960e-22
Identity = 52/133 (39.10%), Postives = 83/133 (62.41%), Query Frame = 1
Query:    1 FLVSKKMLTPSIILRAAAIGEMKMVQWSLAHLSGVGLARAHELMLGRGFMGLKSLHSKSGLPQSCYGLLMAACDVMKDAKEEGLPLDPESFGRRLIEALMTRYENMQSAERGKNLEFIGRFAEDRVRKIAKRL 399
            FL SK +LTPSIILRAA  G+M++++ +LA+LS   L +   ++  R  M LK ++ K GLP++C+ ++ AA DV  + +          FG  +IE LMTRY ++ + E+ + LE + R ++D  R +A+RL
Sbjct:  265 FLASKNLLTPSIILRAACAGDMRVIERALAYLSSTPLKKVERIISDRAAMALKGIYHKCGLPKNCFHIVRAAVDVSGELEHLASSARKLRFGSAVIECLMTRYNSISAQEKSELLEIVARLSDDNTRNLARRL 397          
BLAST of mRNA_P-wetherbeei_contig16549.1.1 vs. uniprot
Match: A0A7X2FUM5_9PROT (DUF2336 domain-containing protein n=1 Tax=Alphaproteobacteria bacterium HT1-32 TaxID=2665153 RepID=A0A7X2FUM5_9PROT)

HSP 1 Score: 84.7 bits (208), Expect = 1.270e-16
Identity = 39/99 (39.39%), Postives = 70/99 (70.71%), Query Frame = 1
Query:   22 LTPSIILRAAAIGEMKMVQWSLAHLSGVGLARAHELMLGRGFMGLKSLHSKSGLPQSCYGLLMAACDVMKDAKEEGLPLDPESFGRRLIEALMTRYENM 318
            LT S+++RA  +G++   + +L+ ++GV L  A +L+  +G +GLK+L+ KSG+P++ Y  + AA DVM++ + +GL  D E F RRLIE ++T+Y+++
Sbjct:  251 LTASLVIRAVCMGDLVFFEHALSAMAGVALENARQLIHDQGHLGLKALYKKSGMPEAQYTAVRAAIDVMRETEYDGLDHDRERFSRRLIERILTQYDDL 349          
BLAST of mRNA_P-wetherbeei_contig16549.1.1 vs. uniprot
Match: A0A7W6WKC1_9PROT (Uncharacterized protein (DUF2336 family) n=1 Tax=Roseospira goensis TaxID=391922 RepID=A0A7W6WKC1_9PROT)

HSP 1 Score: 82.8 bits (203), Expect = 6.630e-16
Identity = 43/117 (36.75%), Postives = 75/117 (64.10%), Query Frame = 1
Query:   22 LTPSIILRAAAIGEMKMVQWSLAHLSGVGLARAHELMLGRGFMGLKSLHSKSGLPQSCYGLLMAACDVMKDAKEEGLPLDPESFGRRLIEALMTRYENMQSAERGKNLEFI-GRFAE 369
            LTPSII+RAA +G++  ++ ++A L+GV +A A  L+   G +GL+ +  ++GLP+S Y  L AA D+ +    +GL  D E + RR+IE ++T+Y ++       +LE++ GR ++
Sbjct:  252 LTPSIIVRAACMGDIIFLECAMAELAGVAVANARILIHDSGHLGLRGIFERAGLPESIYPALRAAVDIFRQTDYDGLERDRERYSRRMIERILTQYGDLGVDFESSDLEYLLGRMSQ 368          
BLAST of mRNA_P-wetherbeei_contig16549.1.1 vs. uniprot
Match: K9HKV2_9PROT (Uncharacterized protein n=1 Tax=Caenispirillum salinarum AK4 TaxID=1238182 RepID=K9HKV2_9PROT)

HSP 1 Score: 81.6 bits (200), Expect = 1.690e-15
Identity = 42/111 (37.84%), Postives = 70/111 (63.06%), Query Frame = 1
Query:   22 LTPSIILRAAAIGEMKMVQWSLAHLSGVGLARAHELMLGRGFMGLKSLHSKSGLPQSCYGLLMAACDVMKDAKEEGLPLDPESFGRRLIEALMTRYENMQSAERGKNLEFI 354
            LTPSIILRA  +G++K  +++LA  +G+ +  A EL+   G +GLK ++ K+GLPQ+ Y  + AA DV  +   +G   D E + RR+IE ++T+Y ++       +LE++
Sbjct:  252 LTPSIILRAVCMGDIKFFEYALAVRTGIPIVNARELIHDNGDLGLKGIYGKAGLPQAFYPAIRAAVDVAAETDYDGEENDRERYSRRMIERVLTQYGDLGVDFESADLEYL 362          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16549.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019A7BFCB1.730e-5668.79DUF2336 domain-containing protein n=1 Tax=Hyphomic... [more]
A0A847ZWL2_9HYPH1.080e-4358.87DUF2336 domain-containing protein n=1 Tax=Phylloba... [more]
UPI0018C4971B2.750e-3750.35DUF2336 domain-containing protein n=1 Tax=Aestuari... [more]
A0A2W2BLR9_9HYPH5.780e-2946.10Uncharacterized protein n=1 Tax=Aestuariivirga lit... [more]
A0A6G6X2N8_9HYPH1.460e-2847.52DUF2336 domain-containing protein n=1 Tax=Nordella... [more]
UPI0019085B842.210e-2542.55DUF2336 domain-containing protein n=1 Tax=Aestuari... [more]
A0A3B0SA49_9ZZZZ1.960e-2239.10Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
A0A7X2FUM5_9PROT1.270e-1639.39DUF2336 domain-containing protein n=1 Tax=Alphapro... [more]
A0A7W6WKC1_9PROT6.630e-1636.75Uncharacterized protein (DUF2336 family) n=1 Tax=R... [more]
K9HKV2_9PROT1.690e-1537.84Uncharacterized protein n=1 Tax=Caenispirillum sal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16549contigP-wetherbeei_contig16549:2..427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1238182.C882_0488
PFAMsDUF2336
Model size426
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.28e-16
EggNOG OGsCOG5330@1|root,COG5330@2|Bacteria,1MXBZ@1224|Proteobacteria,2TT9C@28211|Alphaproteobacteria,2JP8Y@204441|Rhodospirillales
DescriptionUncharacterised protein conserved in bacteria (DUF2336)
Cds size408
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186090.1533704-UTR-P-wetherbeei_contig16549:1..191683186090.1533704-UTR-P-wetherbeei_contig16549:1..19Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16549 2..19 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186090.1736584-CDS-P-wetherbeei_contig16549:19..4271683186090.1736584-CDS-P-wetherbeei_contig16549:19..427Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16549 20..427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16549.1.1prot_P-wetherbeei_contig16549.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16549 20..427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16549.1.1

>prot_P-wetherbeei_contig16549.1.1 ID=prot_P-wetherbeei_contig16549.1.1|Name=mRNA_P-wetherbeei_contig16549.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
MLTPSIILRAAAIGEMKMVQWSLAHLSGVGLARAHELMLGRGFMGLKSLH
SKSGLPQSCYGLLMAACDVMKDAKEEGLPLDPESFGRRLIEALMTRYENM
QSAERGKNLEFIGRFAEDRVRKIAKRLRADMVRAA*
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mRNA from alignment at P-wetherbeei_contig16549:2..427+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16549.1.1 ID=mRNA_P-wetherbeei_contig16549.1.1|Name=mRNA_P-wetherbeei_contig16549.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig16549:2..427+ (Phaeothamnion wetherbeei SAG_119_79)
TTCCTGGTCTCCAAAAAAATGCTGACGCCGTCGATCATTCTGCGCGCCGC GGCAATCGGCGAAATGAAAATGGTGCAATGGTCGCTGGCGCATCTCTCCG GCGTGGGACTGGCGCGGGCCCATGAACTGATGCTGGGCCGCGGTTTCATG GGATTGAAATCGCTGCACAGCAAGTCGGGCCTGCCGCAATCCTGCTATGG CCTGCTGATGGCGGCCTGCGATGTGATGAAGGATGCGAAGGAAGAAGGAC TTCCGCTTGACCCCGAAAGCTTTGGCCGGCGGCTGATTGAGGCGCTGATG ACGCGCTATGAAAACATGCAGAGCGCCGAGCGCGGCAAGAACCTGGAATT CATCGGCCGCTTTGCCGAAGACCGGGTGCGCAAAATCGCCAAACGCCTGC GCGCCGACATGGTGCGGGCTGCCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16549:2..427+

>mRNA_P-wetherbeei_contig16549.1.1 ID=mRNA_P-wetherbeei_contig16549.1.1|Name=mRNA_P-wetherbeei_contig16549.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig16549:2..427+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGACGCCGTCGATCATTCTGCGCGCCGCGGCAATCGGCGAAATGAA
AATGGTGCAATGGTCGCTGGCGCATCTCTCCGGCGTGGGACTGGCGCGGG
CCCATGAACTGATGCTGGGCCGCGGTTTCATGGGATTGAAATCGCTGCAC
AGCAAGTCGGGCCTGCCGCAATCCTGCTATGGCCTGCTGATGGCGGCCTG
CGATGTGATGAAGGATGCGAAGGAAGAAGGACTTCCGCTTGACCCCGAAA
GCTTTGGCCGGCGGCTGATTGAGGCGCTGATGACGCGCTATGAAAACATG
CAGAGCGCCGAGCGCGGCAAGAACCTGGAATTCATCGGCCGCTTTGCCGA
AGACCGGGTGCGCAAAATCGCCAAACGCCTGCGCGCCGACATGGTGCGGG
CTGCCTAA
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