mRNA_P-wetherbeei_contig16496.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16496.1.1
Unique NamemRNA_P-wetherbeei_contig16496.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16496.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16496contigP-wetherbeei_contig16496:854..1420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size567
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186088.6433122-UTR-P-wetherbeei_contig16496:853..9741683186088.6433122-UTR-P-wetherbeei_contig16496:853..974Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16496 854..974 -
1683186088.6591098-UTR-P-wetherbeei_contig16496:1277..14201683186088.6591098-UTR-P-wetherbeei_contig16496:1277..1420Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16496 1278..1420 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186088.651684-CDS-P-wetherbeei_contig16496:974..12771683186088.651684-CDS-P-wetherbeei_contig16496:974..1277Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16496 975..1277 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16496.1.1prot_P-wetherbeei_contig16496.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16496 975..1277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16496.1.1

>prot_P-wetherbeei_contig16496.1.1 ID=prot_P-wetherbeei_contig16496.1.1|Name=mRNA_P-wetherbeei_contig16496.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
MLRVANYSSSLLKRPPSESFSFLSLAWFTRDADFYRSASCTLCVNLPVEG
DLQLKCVTRSWCPNSWCRRQNPHPVPGGLRECTFSCSLSWSANFRLHKSQ
*
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mRNA from alignment at P-wetherbeei_contig16496:854..1420-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16496.1.1 ID=mRNA_P-wetherbeei_contig16496.1.1|Name=mRNA_P-wetherbeei_contig16496.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=567bp|location=Sequence derived from alignment at P-wetherbeei_contig16496:854..1420- (Phaeothamnion wetherbeei SAG_119_79)
TGCTTTTTGGATCCGTCAGTTCTTTGTTCTGTCACATTCAAACTATCGCA
TCAACCCTTGTCCTGCTTGTTCCTTGCCCCCTTTTGCAAAATTTTGAGGA
GCCGGTTTTCCTTGCTTTGCATCGAAAACACGTCTCGTTTAAGATGCTTC
GTGTAGCTAATTATTCTTCTAGTTTGTTAAAGAGGCCTCCCTCGGAATCC
TTTTCTTTCCTTTCCCTCGCCTGGTTTACACGAGATGCGGACTTTTACCG
AAGTGCTTCGTGCACCCTCTGTGTTAATTTGCCCGTGGAAGGCGACTTAC
AGCTCAAGTGCGTGACTCGATCTTGGTGCCCGAATTCATGGTGTCGACGC
CAAAACCCTCATCCGGTTCCGGGCGGGCTGCGCGAGTGCACATTTTCCTG
CTCGCTTTCGTGGTCCGCCAATTTCCGACTGCACAAAAGCCAGTAAGACT
GCCGAGGCAACTAACCTACACCCTCACACCGCCGGCTGCCTCCTGCCGCG
CTTCTCTGCCCGGCCCGCCGCCACGGCCGCCGCCACCACTGCCGCTACCT
TCTACGTACCTGCCCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16496:854..1420-

>mRNA_P-wetherbeei_contig16496.1.1 ID=mRNA_P-wetherbeei_contig16496.1.1|Name=mRNA_P-wetherbeei_contig16496.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig16496:854..1420- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTCGTGTAGCTAATTATTCTTCTAGTTTGTTAAAGAGGCCTCCCTC
GGAATCCTTTTCTTTCCTTTCCCTCGCCTGGTTTACACGAGATGCGGACT
TTTACCGAAGTGCTTCGTGCACCCTCTGTGTTAATTTGCCCGTGGAAGGC
GACTTACAGCTCAAGTGCGTGACTCGATCTTGGTGCCCGAATTCATGGTG
TCGACGCCAAAACCCTCATCCGGTTCCGGGCGGGCTGCGCGAGTGCACAT
TTTCCTGCTCGCTTTCGTGGTCCGCCAATTTCCGACTGCACAAAAGCCAG
TAA
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