mRNA_P-wetherbeei_contig16494.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16494.1.1
Unique NamemRNA_P-wetherbeei_contig16494.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16494.1.1 vs. uniprot
Match: A0A836CFX1_9STRA (Phospholipid-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFX1_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 8.410e-13
Identity = 37/47 (78.72%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    4 FRGNFVKTSKYEFHNFLYKFLWEEFNPRYKIANVYFLFIAVLQVSGS 144
            F  NFVKTSKYE ++FL  FLWEEFNPR KIANVYFLFIAVLQV  S
Sbjct:   95 FCTNFVKTSKYEPYSFLPLFLWEEFNPRTKIANVYFLFIAVLQVIPS 141
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BLAST of mRNA_P-wetherbeei_contig16494.1.1 vs. uniprot
Match: A0A6H5JC88_9PHAE (PhoLip_ATPase_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC88_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 7.500e-12
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    4 FRGNFVKTSKYEFHNFLYKFLWEEFNPRYKIANVYFLFIAVLQVSGS 144
            F  N V+T+KYE+++FL +FLWEEFNP  KIANVYFLFIA LQV  S
Sbjct:   99 FASNMVRTAKYEYYDFLPRFLWEEFNPASKIANVYFLFIAALQVIPS 145
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BLAST of mRNA_P-wetherbeei_contig16494.1.1 vs. uniprot
Match: D7G0C1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C1_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 7.510e-12
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    4 FRGNFVKTSKYEFHNFLYKFLWEEFNPRYKIANVYFLFIAVLQVSGS 144
            F  N V+T+KYE+++FL +FLWEEFNP  KIANVYFLFIA LQV  S
Sbjct:   99 FASNMVRTAKYEYYDFLPRFLWEEFNPATKIANVYFLFIAALQVIPS 145
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BLAST of mRNA_P-wetherbeei_contig16494.1.1 vs. uniprot
Match: A0A482SFD1_9ARCH (PhoLip_ATPase_N domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SFD1_9ARCH)

HSP 1 Score: 58.5 bits (140), Expect = 1.350e-8
Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    4 FRGNFVKTSKYEFHNFLYKFLWEEFNPRYKIANVYFLFIAVLQ 132
            F  NFVKTSKYE  +FL KFL EEFNPR KIAN YFL I+ LQ
Sbjct:   80 FCNNFVKTSKYEVWDFLPKFLLEEFNPRTKIANCYFLMISGLQ 122
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BLAST of mRNA_P-wetherbeei_contig16494.1.1 vs. uniprot
Match: A0A7S3HLE4_9STRA (Phospholipid-transporting ATPase n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLE4_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.490e-6
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 SFRGNFVKTSKYEFHNFLYKFLWEEFNPRYKIANVYFLFIAVLQVSG 141
            SF  N ++T KYE++ F  KFL EEFNP+ KIAN YFL IA +Q  G
Sbjct:   35 SFCNNSIRTYKYEWYTFPPKFLLEEFNPKQKIANCYFLTIAGMQCIG 81
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BLAST of mRNA_P-wetherbeei_contig16494.1.1 vs. uniprot
Match: A0A0L0DAI9_THETB (Phospholipid-transporting ATPase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DAI9_THETB)

HSP 1 Score: 49.7 bits (117), Expect = 1.840e-5
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    4 FRGNFVKTSKYEFHNFLYKFLWEEFNPRYKIANVYFLFIAVLQ 132
            F  N+  TSKY   NF+ K LWE+F+   +IANVYFLFIAVLQ
Sbjct:   34 FNSNYTTTSKYTVFNFVPKNLWEQFH---RIANVYFLFIAVLQ 73
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16494.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A836CFX1_9STRA8.410e-1378.72Phospholipid-transporting ATPase n=1 Tax=Tribonema... [more]
A0A6H5JC88_9PHAE7.500e-1268.09PhoLip_ATPase_N domain-containing protein n=1 Tax=... [more]
D7G0C1_ECTSI7.510e-1268.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A482SFD1_9ARCH1.350e-872.09PhoLip_ATPase_N domain-containing protein n=1 Tax=... [more]
A0A7S3HLE4_9STRA1.490e-657.45Phospholipid-transporting ATPase n=2 Tax=Spumella ... [more]
A0A0L0DAI9_THETB1.840e-560.47Phospholipid-transporting ATPase n=1 Tax=Thecamona... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16494contigP-wetherbeei_contig16494:363..530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G0C1
PFAMsCation_ATPase,E1-E2_ATPase,Hydrolase,PhoLip_ATPase_C,PhoLip_ATPase_N
Model size168
Max annot lvl2759|Eukaryota
KEGG koko:K01530,ko:K14802
KEGG TC3.A.3.8
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.23e-12
EggNOG OGsCOG0474@1|root,KOG0206@2759|Eukaryota
EC3.6.3.1
Descriptionphospholipid-translocating ATPase activity
Cds size168
COG categoryP
BRITEko00000,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186088.5923615-CDS-P-wetherbeei_contig16494:362..5301683186088.5923615-CDS-P-wetherbeei_contig16494:362..530Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16494 363..530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16494.1.1prot_P-wetherbeei_contig16494.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16494 363..530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16494.1.1

>prot_P-wetherbeei_contig16494.1.1 ID=prot_P-wetherbeei_contig16494.1.1|Name=mRNA_P-wetherbeei_contig16494.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=56bp
SFRGNFVKTSKYEFHNFLYKFLWEEFNPRYKIANVYFLFIAVLQVSGSDR
SEQEH*
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mRNA from alignment at P-wetherbeei_contig16494:363..530-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16494.1.1 ID=mRNA_P-wetherbeei_contig16494.1.1|Name=mRNA_P-wetherbeei_contig16494.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig16494:363..530- (Phaeothamnion wetherbeei SAG_119_79)
TCCTTCCGTGGCAACTTTGTCAAGACGTCCAAATACGAGTTCCACAACTT
CCTCTACAAGTTTCTGTGGGAAGAGTTCAACCCGCGCTACAAGATCGCCA
ACGTCTATTTCCTCTTCATAGCCGTGCTTCAGGTGAGCGGATCGGACCGA
AGCGAACAGGAACACTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16494:363..530-

>mRNA_P-wetherbeei_contig16494.1.1 ID=mRNA_P-wetherbeei_contig16494.1.1|Name=mRNA_P-wetherbeei_contig16494.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig16494:363..530- (Phaeothamnion wetherbeei SAG_119_79)
TCCTTCCGTGGCAACTTTGTCAAGACGTCCAAATACGAGTTCCACAACTT
CCTCTACAAGTTTCTGTGGGAAGAGTTCAACCCGCGCTACAAGATCGCCA
ACGTCTATTTCCTCTTCATAGCCGTGCTTCAGGTGAGCGGATCGGACCGA
AGCGAACAGGAACACTAG
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