mRNA_P-wetherbeei_contig16487.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16487.2.1
Unique NamemRNA_P-wetherbeei_contig16487.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16487.2.1 vs. uniprot
Match: D7G7U0_ECTSI (Ephrin_rec_like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U0_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 3.160e-61
Identity = 135/233 (57.94%), Postives = 155/233 (66.52%), Query Frame = 1
Query:    4 ATEAQCVLDCASNVTTGINANA-----------TQRMVGPTEP--DFNATYPYAKAPLPLRSPRFCQVGCAHFFGPAPVNTTCKGICDVTFMHNTSVGFNDWAEKARLECRDGCDIALLRCQAGYYCTNGSMLPCPAGTYRETSYGAVTACTXXXXXXXXAATLGREVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGDADGLAVCECITASSCEAMYDQFQRESQPFIGR 663
            AT  QC LDCA N T  + A+A           TQR+VGPTEP  + NATYPYA+APLPL    FCQ+GC++FF  +P NTTC G+CD  ++ N SVG ND+AEKARLECRDGC+IA+LRCQ GY C  G M  C  GTYR TSY  +  CT        A   G  V DXXXXXXXXXXXXXXXXXXXXXXXXXXXXY   +G A C C+T  SC   +  FQR+S P IGR
Sbjct:   38 ATLEQCHLDCAGNTTAELVADAALNGGSWSVWDTQRLVGPTEPASEVNATYPYARAPLPLPFHSFCQLGCSYFFAGSPRNTTCSGLCDDFYVRNVSVGINDYAEKARLECRDGCNIAVLRCQPGYSCAAGVMSECSPGTYRNTSYDMINTCTQCPKGTYRAKGKGSGVDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAKEEGTAECSCVTEDSCLPEWQNFQRDSMPHIGR 270          
BLAST of mRNA_P-wetherbeei_contig16487.2.1 vs. uniprot
Match: A0A7S3HQK9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQK9_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.170e-40
Identity = 106/219 (48.40%), Postives = 133/219 (60.73%), Query Frame = 1
Query:   58 NANATQRMVGPTEPDFNATYPYAKAPLPLRSPRFCQVGCAHFFGPAPVNTTCKGICDVTFMHNTSVGFNDWAEKARLECRDGCDIALLRCQAGYYCTNGSMLPCPAGTYRET-------SYGAVTACTXXXXXXXXAATLGREVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGDADGLAVCECITASSCEAMYDQ---------FQRESQPFIGRW 666
            N  +  R+ GPT+      +P+A A  P +   FCQ+GC  F+   P NTTCK +C+  + +  +VG+ND AE+A+LEC+DGC+IAL  CQAGYYC  G MLPCPAGTYRE        +    T+CT        +   G+    XXXXXXXXXXXXXXXXXXXXXXXXXXXX     G  +C+CIT  SC ++ D          + RES PFIGRW
Sbjct:   38 NCVSADRLTGPTKMQQTKQHPWAMAAFPTKQKGFCQLGCQLFYTEVPKNTTCKRLCNYFYRYKITVGYNDLAEEAKLECQDGCEIALQVCQAGYYCDEGIMLPCPAGTYREPVTDVSILALEKATSCTKCPYGRYRSTNKGKSADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQRLCKCITPGSCGSIIDDNVVFSNGVDYYRESIPFIGRW 256          
BLAST of mRNA_P-wetherbeei_contig16487.2.1 vs. uniprot
Match: A0A7S1TV74_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TV74_9STRA)

HSP 1 Score: 139 bits (351), Expect = 3.120e-37
Identity = 101/187 (54.01%), Postives = 121/187 (64.71%), Query Frame = 1
Query:   76 RMVGPTEPDFNATYPYAKAPLPLRSPRFCQVGCAHFFGPAPVNTTCKGICDVTFMHNTSVGFNDWAEKARLECRDGCDIALLRCQAGYYCTNGSMLPCPAGTYRETSYGAVTACTXXXXXXXXAATLGREVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGDADGLAVCECITASSCEAMYDQFQ 636
            R VGPT P     +P+  AP P    +FCQ GC+ FF   PV T C+  CD  + ++ +V +ND AE ARLECRDGC++ LLRCQAGYYCT GSML CP GTYR+  + AV AC         +   GR +  XXXXXXXXXXXXXXXXXXXXXXXXXXXX     GLA+C+CIT  S   + D  +
Sbjct:   31 RPVGPTRPPNTRGHPWFPAPNPNPYLQFCQTGCSLFFESYPVLTDCQAECDRIYRYDVTVAYNDQAEVARLECRDGCEMGLLRCQAGYYCTAGSMLQCPIGTYRDVDFAAVEACVDCPRGRYRSDPRGRYLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLALCKCITTKSFVGVSDDIE 217          
BLAST of mRNA_P-wetherbeei_contig16487.2.1 vs. uniprot
Match: A0A7S0XEG6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEG6_9STRA)

HSP 1 Score: 115 bits (287), Expect = 5.130e-28
Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 1
Query:   58 NANATQRMVGPTEPDFNATYPYAKAPLPLRSPRFCQVGCAHFFGPAPVNTTCKGICDVTFMHNTSVGFNDWAEKARLECRDGCDIALLRCQAGYYCTNGSMLPCPAGTYRET 393
            N N+  R+ GP +P    T+P+  A  P  +  FC++GC +FF     N TC   C   + +  + G++D AE A+LEC DGC+IAL  CQAGYYC NG+M  CPAG YRE+
Sbjct:   38 NCNSDDRLFGPIKPPDTRTHPWKVAQFPSTTTAFCKLGCQYFFSYYSNNNTCINQCKYQYRYQATTGYSDSAELAKLECLDGCNIALSICQAGYYCVNGNMTVCPAGKYRES 149          
BLAST of mRNA_P-wetherbeei_contig16487.2.1 vs. uniprot
Match: A0A835ZBR7_9STRA (Ephrin_rec_like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBR7_9STRA)

HSP 1 Score: 109 bits (272), Expect = 4.990e-26
Identity = 90/188 (47.87%), Postives = 108/188 (57.45%), Query Frame = 1
Query:  112 TYPYAKAPLPLRSP--RFCQVGCAHFFGPAPVNTTCKGICDVTFMHNTSVGFNDWAEKARLECRDGCDIALLRCQAGYYCTNG-SMLPCPAGTYRETSYGAVTACTXXXXXXXXAATLGREVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGDADGLAVCECITASSCEAMYDQFQRESQPFIGRW 666
            T+PYA A     +   +FC+ GCA+F+  +P   +C   CD  +   TS   +DWAEKARL+CRDGC I    CQ GY C +   M+ C  GTYR  S   VT C          A  G  + DXXXXXXXXXXXXXXXXXXXXXXXXXXX Y   +G A C  IT  S    +     ES+PF+GRW
Sbjct:   18 THPYAVADATRLATLTQFCEAGCAYFYSSSPTLQSCDVNCDEMYRQRTSFNVSDWAEKARLDCRDGCRIGFRVCQPGYKCEHAHGMVECEPGTYRNASDADVTQCIACPAGHYREAPGGAGLLDXXXXXXXXXXXXXXXXXXXXXXXXXXXLYTLVEGQAACANITYDSGNPEFQNLLNESEPFLGRW 205          
BLAST of mRNA_P-wetherbeei_contig16487.2.1 vs. uniprot
Match: A0A7S1ZTF7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZTF7_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.210e-22
Identity = 90/204 (44.12%), Postives = 114/204 (55.88%), Query Frame = 1
Query:  154 RFCQVGCAHFFGPA--PVNTT-CKGICDVTFMHNTSVGFNDWAEKARLECRDGCDIALLRCQAGYYC-------------------------TNGSMLPCPAGTYRETSYGAVTACTXXXXXXXXAATLGREVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGDADGLAVCECITASSCE-----AMYDQFQRESQPFIGRW 666
            +FC+VGC  FF     P++ + C   CD  + +N +VG+ND  E +RLECRDGC +AL RCQ GY+C                         T G M  CPAG YR+ SY A+  C           T G+ +  XXXXXXXXXXXXXXXXXXXXXXXXXXXX       A C+CIT+ SC+     +  +  +RE+ P+IGRW
Sbjct:   98 KFCEVGCTLFFSSISDPMHLSECTHKCDQIYQYNITVGYNDLMEVSRLECRDGCQMALKRCQPGYFCSQVSLLNDDENSTLGPKSHGRDTRYTGGYMSHCPAGKYRDFSYDAIEMCVDCPPGRFREDTKGKSLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFCKCITSDSCKKEQLPSPANSEKRETIPYIGRW 301          
BLAST of mRNA_P-wetherbeei_contig16487.2.1 vs. uniprot
Match: A0A7S1FSZ0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FSZ0_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.350e-18
Identity = 85/200 (42.50%), Postives = 108/200 (54.00%), Query Frame = 1
Query:  154 RFCQVGCAHFFG----PAPVNTTCKGICDVTFMHNTSVGFNDWAEKARLECRDGCDIALLRCQAGYYC---------------------TNGSMLPCPAGTYRETSYGAVTACTXXXXXXXXAATLGREVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGDADGLAVCECITASSCEAMY-----DQFQRESQPFIGR 663
            R CQ+GC  FF     P  +++ C  +CD  + +N +V +ND  E  RLECRDGC +AL+RCQ GY+C                       GSM  C  G+YR+ SY AV  C           T G  +  XXXXXXXXXXXXXXXXXXXXXXXXXXX +    G  VC+CIT  +C+        D  +R + P++GR
Sbjct:  230 RACQLGCTLFFSLRENPKQLSS-CLSLCDDKYAYNITVSYNDLMELVRLECRDGCHMALMRCQPGYFCLQPSTTLDDDGKHHLSSTSLPNGGSMHECLPGSYRDVSYHAVDTCVPCPPGRFREETRGLSMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFTTEPGRHVCKCITPQACDKEQLPDPADAEKRNTVPYVGR 428          
BLAST of mRNA_P-wetherbeei_contig16487.2.1 vs. uniprot
Match: K0QZJ0_THAOC (Ephrin_rec_like domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZJ0_THAOC)

HSP 1 Score: 92.4 bits (228), Expect = 3.530e-18
Identity = 67/183 (36.61%), Postives = 81/183 (44.26%), Query Frame = 1
Query:    4 ATEAQCVLDCASNVTTGINANATQRMVGPTEPDFNATYPY---AKAPLPLRS-PRFCQVGCAHFFGPAPVNTT----------CKGICDVTFMH-NTSVGFNDWAEKARLECRDGCDIALLRCQAGYYCTN------------GSMLPCPAGTYRETSYGAVTACTXXXXXXXXAATLGREVS 471
            ATE QC +DC S+  T       Q    P       T PY   A A    R  P FC++GC +FF P   +            C   C+  F + +T+  +ND    ARLECRDGC +AL RCQ GYYC+             G M PCP GTYR+  YGAV AC             GR  S
Sbjct:  156 ATEEQCRIDCNSDDRTPTRPWHEQ---DPLRNALRLTRPYPYHAAADDDERDYPAFCRLGCNYFFVPESSDDPEDESKSTLDQCLERCEEEFEYTSTTPPYNDLVAIARLECRDGCLLALRRCQPGYYCSQVSFRDGNGTYAGGQMTPCPPGTYRDVDYGAVEACVPCPPNHFREDVKGRSAS 335          
BLAST of mRNA_P-wetherbeei_contig16487.2.1 vs. uniprot
Match: A0A7S2SQ56_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQ56_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.490e-17
Identity = 54/137 (39.42%), Postives = 67/137 (48.91%), Query Frame = 1
Query:   61 ANATQRMVGPTEPDFNATYPY----AKAPLPLRSPRFCQVGCAHFFGPA--PVNTTCKGICDVTFMHNTSVGFNDWAEKARLECRDGCDIALLRCQAGYYC----TNG--------------SMLPCPAGTYRETSY 399
            A A +R +GPT P     +PY     K   P    +FC+ GC  F+     P N TCK  C  T+ +  SVG ND A  ARLEC DGCD+AL+RC+ GY C    T G              +M  CP GT+R   Y
Sbjct:   82 ALAGRRPIGPTRPSEPRDHPYFHAVGKDAWPNTYAKFCEAGCTFFYSEPEYPSNITCKQRCSSTYAYEGSVGENDMAMVARLECYDGCDLALMRCRPGYSCDWPSTTGLGAVDAAAGWTRTANMTACPLGTWRGVLY 218          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16487.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G7U0_ECTSI3.160e-6157.94Ephrin_rec_like domain-containing protein n=1 Tax=... [more]
A0A7S3HQK9_9STRA1.170e-4048.40Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1TV74_9STRA3.120e-3754.01Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0XEG6_9STRA5.130e-2845.54Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A835ZBR7_9STRA4.990e-2647.87Ephrin_rec_like domain-containing protein n=1 Tax=... [more]
A0A7S1ZTF7_9STRA3.210e-2244.12Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S1FSZ0_9STRA2.350e-1842.50Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
K0QZJ0_THAOC3.530e-1836.61Ephrin_rec_like domain-containing protein (Fragmen... [more]
A0A7S2SQ56_9STRA1.490e-1739.42Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16487contigP-wetherbeei_contig16487:588..1256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G7U0
PFAMsEphrin_rec_like
Model size669
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.18e-62
EggNOG OGs2D7CU@1|root,2S58T@2759|Eukaryota
Ec32 ortholog descriptionInsulin-like growth factor binding protein, N-terminal
Ec32 orthologEc-06_000310.1
Cds size669
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186088.3440228-CDS-P-wetherbeei_contig16487:587..12561683186088.3440228-CDS-P-wetherbeei_contig16487:587..1256Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16487 588..1256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16487.2.1prot_P-wetherbeei_contig16487.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16487 588..1256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16487.2.1

>prot_P-wetherbeei_contig16487.2.1 ID=prot_P-wetherbeei_contig16487.2.1|Name=mRNA_P-wetherbeei_contig16487.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=223bp
TATEAQCVLDCASNVTTGINANATQRMVGPTEPDFNATYPYAKAPLPLRS
PRFCQVGCAHFFGPAPVNTTCKGICDVTFMHNTSVGFNDWAEKARLECRD
GCDIALLRCQAGYYCTNGSMLPCPAGTYRETSYGAVTACTPCPAGSYRAA
TLGREVSDCSLCPQGTFLNSTGSVTIHDCTRCPDGYYGDADGLAVCECIT
ASSCEAMYDQFQRESQPFIGRW*
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mRNA from alignment at P-wetherbeei_contig16487:588..1256+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16487.2.1 ID=mRNA_P-wetherbeei_contig16487.2.1|Name=mRNA_P-wetherbeei_contig16487.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=669bp|location=Sequence derived from alignment at P-wetherbeei_contig16487:588..1256+ (Phaeothamnion wetherbeei SAG_119_79)
ACAGCCACCGAAGCGCAGTGCGTGCTCGATTGCGCTTCCAATGTCACGAC GGGGATAAACGCCAACGCGACGCAGCGGATGGTGGGCCCCACGGAGCCGG ACTTCAATGCTACATACCCCTACGCCAAGGCACCGCTTCCCCTGCGATCT CCGAGGTTCTGCCAAGTCGGCTGCGCCCACTTTTTCGGCCCTGCGCCTGT CAACACCACCTGCAAGGGTATCTGCGACGTCACCTTCATGCACAACACGT CCGTAGGCTTCAACGACTGGGCCGAAAAGGCGCGCCTCGAGTGCCGCGAC GGCTGCGACATTGCGCTCCTACGTTGCCAGGCAGGCTACTACTGCACGAA TGGAAGCATGCTGCCGTGCCCCGCTGGCACGTACCGCGAAACGTCCTACG GCGCCGTGACGGCCTGCACGCCCTGCCCGGCCGGCAGTTACCGGGCGGCG ACGCTGGGCCGCGAGGTGTCGGACTGCTCCCTGTGCCCCCAGGGCACCTT CCTCAACTCCACGGGCTCCGTCACCATCCACGACTGCACGCGCTGCCCAG ACGGCTACTATGGGGACGCCGACGGGCTCGCCGTCTGCGAGTGCATCACA GCGTCCAGCTGCGAGGCGATGTACGACCAGTTTCAACGCGAGAGCCAACC GTTCATTGGCCGCTGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16487:588..1256+

>mRNA_P-wetherbeei_contig16487.2.1 ID=mRNA_P-wetherbeei_contig16487.2.1|Name=mRNA_P-wetherbeei_contig16487.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=669bp|location=Sequence derived from alignment at P-wetherbeei_contig16487:588..1256+ (Phaeothamnion wetherbeei SAG_119_79)
ACAGCCACCGAAGCGCAGTGCGTGCTCGATTGCGCTTCCAATGTCACGAC
GGGGATAAACGCCAACGCGACGCAGCGGATGGTGGGCCCCACGGAGCCGG
ACTTCAATGCTACATACCCCTACGCCAAGGCACCGCTTCCCCTGCGATCT
CCGAGGTTCTGCCAAGTCGGCTGCGCCCACTTTTTCGGCCCTGCGCCTGT
CAACACCACCTGCAAGGGTATCTGCGACGTCACCTTCATGCACAACACGT
CCGTAGGCTTCAACGACTGGGCCGAAAAGGCGCGCCTCGAGTGCCGCGAC
GGCTGCGACATTGCGCTCCTACGTTGCCAGGCAGGCTACTACTGCACGAA
TGGAAGCATGCTGCCGTGCCCCGCTGGCACGTACCGCGAAACGTCCTACG
GCGCCGTGACGGCCTGCACGCCCTGCCCGGCCGGCAGTTACCGGGCGGCG
ACGCTGGGCCGCGAGGTGTCGGACTGCTCCCTGTGCCCCCAGGGCACCTT
CCTCAACTCCACGGGCTCCGTCACCATCCACGACTGCACGCGCTGCCCAG
ACGGCTACTATGGGGACGCCGACGGGCTCGCCGTCTGCGAGTGCATCACA
GCGTCCAGCTGCGAGGCGATGTACGACCAGTTTCAACGCGAGAGCCAACC
GTTCATTGGCCGCTGGTGA
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